Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

61595017 .. 61598901

Gene Structure 3885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG385200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGTCTGGCACAGAGAGTGATGAAGCCTCTGACACTCCAGAAATTTACAAAGACCCAGATGATGGGAGGCAGCGATTCTTGCTTGAATTGGAGTTCATCCAATGTCTCGCAAATCCCACTTACATTCACTATTTGGCTCAAAATCGGTACTTTGAAGATGAAGCCTTCATTGGGTACTTGAAATATCTTCAGTATTGGCAGCGTCCTGAGTACACCAAATTCATAATGTACCCTCATTGCTTGTTTTTTCTTGAGCAACTCCAAAATGCAAACTTTCGCAATGCAATGGCACATCCTGCCAACAAGGAATTGGCGCATAGGCAGCAATTCTACTTCTGGAAGAACTATAGGCACAACCGTTTGAAACACATATTACCTAGACCTCTTCCTGAACCCGAAGCTGCACCCCCCGTCTCTGCTCCGCCTCAGCAACCTGTGCCTGCTCTTCCACCTGTGCCAGCTGCAACCATTTCTGCTACAGCTACTGCTCCTGCCCTTCCCCCTATGCAGTATGCTAATGCCCCTGGATCTGCTCTTGCAAAGAATGATGCAAGGAATAGTGCGGTTGATCGAAGAAAGAGAAAGAAAGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:0140110 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med31

Protein Analysis

199

Amino Acids

22.87

Weight (kDa)

8.45

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med31	PF05669	25 - 117	9.4e-35	SOH1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	2 cut(s)	425, 566
AclWI	GGATC	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	45, 221
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	152, 179, 215, 233
AfiI	CCNNNNNNNGG	2 cut(s)	65, 174
AgsI	TTSAA	4 cut(s)	89, 158, 184, 367
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	3 cut(s)	404, 464, 485
AluI	AGCT	3 cut(s)	404, 464, 485
Alw26I	GTCTC	2 cut(s)	113, 421
AlwI	GGATC	1 cut(s)	538
AlwNI	CAGNNNCTG	1 cut(s)	488
ApeKI	GCWGC	5 cut(s)	73, 202, 325, 404, 464
ApoI	RAATTY	2 cut(s)	45, 221
AspLEI	GCGC	1 cut(s)	319
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	5 cut(s)	85, 214, 337, 391, 451
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	113, 421
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	2 cut(s)	349, 480
BisI	GCNGC	5 cut(s)	74, 203, 326, 405, 465
BlsI	GCNGC	5 cut(s)	75, 204, 327, 406, 466
Bme1390I	CCNGG	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 174
Bse3DI	GCAATG	3 cut(s)	238, 289, 294
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	99, 295
BseLI	CCNNNNNNNGG	2 cut(s)	65, 174
BseMI	GCAATG	3 cut(s)	238, 289, 294
BseMII	CTCAG	2 cut(s)	201, 443
BseXI	GCAGC	5 cut(s)	85, 214, 337, 391, 451
BsgI	GTGCAG	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	65, 174
BsmAI	GTCTC	2 cut(s)	113, 421
BsmBI	CGTCTC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	530, 571
BspACI	CCGC	2 cut(s)	425, 566
BspCNI	CTCAG	2 cut(s)	202, 442
BspPI	GGATC	1 cut(s)	538
BspQI	GCTCTTC	1 cut(s)	453
BsrDI	GCAATG	3 cut(s)	238, 289, 294
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	2 cut(s)	530, 571
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	2 cut(s)	393, 453
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	299, 439
BstC8I	GCNNGC	2 cut(s)	444, 462
BstDEI	CTNAG	2 cut(s)	210, 429
BstF5I	GGATG	2 cut(s)	99, 295
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	2 cut(s)	533, 574
BstMAI	GTCTC	2 cut(s)	113, 421
BstMBI	GATC	2 cut(s)	530, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 299, 325, 439
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	2 cut(s)	349, 480
BstV1I	GCAGC	5 cut(s)	85, 214, 337, 391, 451
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	99, 295
Cac8I	GCNNGC	2 cut(s)	444, 462
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	319
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	4 cut(s)	151, 178, 214, 232
CviJI	RGCY	7 cut(s)	29, 140, 167, 404, 464, 485, 597
CviKI_1	RGCY	7 cut(s)	29, 140, 167, 404, 464, 485, 597
CviQI	GTAC	4 cut(s)	151, 178, 214, 232
DdeI	CTNAG	2 cut(s)	210, 429
DpnI	GATC	2 cut(s)	532, 573
DpnII	GATC	2 cut(s)	530, 571
Eam1104I	CTCTTC	2 cut(s)	393, 453
EarI	CTCTTC	2 cut(s)	393, 453
EciI	GGCGGA	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	526
Esp3I	CGTCTC	1 cut(s)	421
FaiI	YATR	6 cut(s)	227, 321, 351, 374, 509, 516
Fnu4HI	GCNGC	5 cut(s)	74, 203, 326, 405, 465
FokI	GGATG	2 cut(s)	86, 282
Fsp4HI	GCNGC	5 cut(s)	74, 203, 326, 405, 465
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	5 cut(s)	74, 203, 326, 405, 465
GsuI	CTGGAG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	5 cut(s)	41, 209, 254, 340, 392
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	3 cut(s)	178, 509, 587
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	7 cut(s)	272, 287, 407, 467, 511, 542, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 299, 325, 439
HpyF3I	CTNAG	2 cut(s)	210, 429
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	2 cut(s)	530, 571
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	427, 496
Lsp1109I	GCAGC	5 cut(s)	85, 214, 337, 391, 451
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	381
MalI	GATC	2 cut(s)	532, 573
MboI	GATC	2 cut(s)	530, 571
MboII	GAAGA	6 cut(s)	170, 182, 355, 380, 440, 588
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	5 cut(s)	45, 89, 221, 311, 329
MnlI	CCTC	5 cut(s)	40, 63, 246, 396, 438
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	82, 299, 325, 439
NdeII	GATC	2 cut(s)	530, 571
PciSI	GCTCTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	5 cut(s)	75, 204, 327, 406, 466
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	4 cut(s)	152, 179, 215, 233
RsaNI	GTAC	4 cut(s)	151, 178, 214, 232
SapI	GCTCTTC	1 cut(s)	453
SatI	GCNGC	5 cut(s)	74, 203, 326, 405, 465
Sau3AI	GATC	2 cut(s)	530, 571
ScrFI	CCNGG	1 cut(s)	528
SetI	ASST	7 cut(s)	382, 388, 406, 439, 457, 466, 487
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	2 cut(s)	349, 480
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	45, 89, 221, 311, 329
SsiI	CCGC	2 cut(s)	425, 566
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	1 cut(s)	574
TasI	AATT	5 cut(s)	45, 89, 221, 311, 329
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	78
TseI	GCWGC	5 cut(s)	73, 202, 325, 404, 464
TspDTI	ATGAA	5 cut(s)	39, 88, 160, 177, 214
Van91I	CCANNNNNTGG	1 cut(s)	65
XapI	RAATTY	2 cut(s)	45, 221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.