Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377585.1

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 587

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377585.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

gaattggcgcataggcagcaattctacttctggaagaactataggcacaaccgtttgaaacacatattacctagacctcttcctgaacctgaagctgcaccccccgtctctgctccgcctcagcaacctgtgcctgctcttccacctgtgccagctgcaaccatttctgctacagctactgctcctgcccttccccctatgcagtatgctaatgcccctggatctgctcttgcaaagaatgatgcaaggaatagtgcggttgatcgaagaaagagaaagaaagaaggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:0140110 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med31

Protein Analysis

96

Amino Acids

10.55

Weight (kDa)

10.48

Isoelectric Point (pI)

85.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	116, 257
AclWI	GGATC	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	95, 155, 176
AluI	AGCT	3 cut(s)	95, 155, 176
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	16, 95, 155
AspLEI	GCGC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	28, 82, 142
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	40, 171
BisI	GCNGC	3 cut(s)	17, 96, 156
BlsI	GCNGC	3 cut(s)	18, 97, 157
Bme1390I	CCNGG	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	28, 82, 142
BsgI	GTGCAG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	221, 262
BspACI	CCGC	2 cut(s)	116, 257
BspCNI	CTCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	221, 262
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	84, 144
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	135, 153
BstDEI	CTNAG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	224, 265
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	2 cut(s)	221, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 130
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	2 cut(s)	40, 171
BstV1I	GCAGC	3 cut(s)	28, 82, 142
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	135, 153
CaiI	CAGNNNCTG	1 cut(s)	179
CfoI	GCGC	1 cut(s)	10
CviJI	RGCY	4 cut(s)	95, 155, 176, 288
CviKI_1	RGCY	4 cut(s)	95, 155, 176, 288
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	223, 264
DpnII	GATC	2 cut(s)	221, 262
Eam1104I	CTCTTC	2 cut(s)	84, 144
EarI	CTCTTC	2 cut(s)	84, 144
EciI	GGCGGA	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	112
FaiI	YATR	5 cut(s)	12, 42, 65, 200, 207
Fnu4HI	GCNGC	3 cut(s)	17, 96, 156
Fsp4HI	GCNGC	3 cut(s)	17, 96, 156
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	17, 96, 156
HhaI	GCGC	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
Hpy188III	TCNNGA	2 cut(s)	31, 83
HpyAV	CCTTC	2 cut(s)	200, 278
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	5 cut(s)	98, 158, 202, 233, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 130
HpyF3I	CTNAG	1 cut(s)	120
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	221, 262
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	118, 187
Lsp1109I	GCAGC	3 cut(s)	28, 82, 142
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	72
MalI	GATC	2 cut(s)	223, 264
MboI	GATC	2 cut(s)	221, 262
MboII	GAAGA	4 cut(s)	46, 71, 131, 279
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	2 cut(s)	2, 20
MnlI	CCTC	2 cut(s)	87, 129
MspA1I	CMGCKG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	16, 130
NdeII	GATC	2 cut(s)	221, 262
PciSI	GCTCTTC	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	18, 97, 157
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	144
SatI	GCNGC	3 cut(s)	17, 96, 156
Sau3AI	GATC	2 cut(s)	221, 262
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	8 cut(s)	73, 79, 91, 97, 130, 148, 157, 178
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	2 cut(s)	40, 171
Sse9I	AATT	2 cut(s)	2, 20
SsiI	CCGC	2 cut(s)	116, 257
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	2, 20
TseI	GCWGC	3 cut(s)	16, 95, 155
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.