Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

48196613 .. 48196857

Gene Structure 245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG349100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 245 bp

ATGGGAAAAGCATGGTTCTTGCTTACCAAACTGCACTCCCTTGCTTGGCCTGGATTGTCGTTGGCTTACCCTTTATACGCATCAATGATGGCCATGGAGGGCGGCGACACATCGAAACCAGACGTTCAGCAGTGGCTTGCTTATTGGATCATGTACGCTTTACTCTCTCCGTTGGAGACGATTCTCCAACCCCTTTTACAATGGATACCGTTCTGGTACGACGTGAAGCTTGTGTTGGTGGCATG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

81

Amino Acids

9.33

Weight (kDa)

5.5

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 80	4.6e-15	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	2 cut(s)	155, 218
AfiI	CCNNNNNNNGG	1 cut(s)	45
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	2 cut(s)	47, 90
BalI	TGGCCA	1 cut(s)	92
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	51
BmgBI	CACGTC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	49, 92
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	49, 92
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	49, 92
BspPI	GGATC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	49, 92
BtgI	CCRYGG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	154, 217
CviAII	CATG	4 cut(s)	12, 94, 151, 243
CviJI	RGCY	5 cut(s)	49, 65, 92, 136, 229
CviKI_1	RGCY	5 cut(s)	49, 65, 92, 136, 229
CviQI	GTAC	2 cut(s)	154, 217
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	3 cut(s)	15, 97, 154
FaiI	YATR	5 cut(s)	13, 76, 95, 152, 244
FatI	CATG	3 cut(s)	11, 93, 150
Fnu4HI	GCNGC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	49, 92
Hin1II	CATG	3 cut(s)	15, 97, 154
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	2 cut(s)	123, 222
HpyCH4V	TGCA	1 cut(s)	34
HpySE526I	ACGT	2 cut(s)	123, 222
Hsp92II	CATG	3 cut(s)	15, 97, 154
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	4 cut(s)	36, 63, 132, 199
LweI	GCATC	1 cut(s)	89
MaeII	ACGT	2 cut(s)	123, 222
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	153, 211
MnlI	CCTC	1 cut(s)	91
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	3 cut(s)	15, 97, 154
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	155, 218
RsaNI	GTAC	2 cut(s)	154, 217
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	3 cut(s)	126, 225, 231
SfaNI	GCATC	1 cut(s)	89
SsiI	CCGC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	2 cut(s)	126, 225
TaqI	TCGA	1 cut(s)	113
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	181
TscAI	CASTG	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.