Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

31217445 .. 31220601

Gene Structure 3157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1241000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGTCCGGCACAGAGAGCGATGACACAGCCGATACTCCACCGCCGACAAGCAGTATTTACAAGGACCCAGATGACGGGCGGCAGCGATTCTTGCTCGAATTGGAGTTCGTCCAGTGCCTCGCAAACCCCACTTACATTCACTATTTGGCTCAGAATCGTTACTTTGAGGATGAGGCTTTCATTGGGTACTTGAAGTATCTTCAGTATTGGCAGCGTCCCGAGTATACGAGATTTATAATGTATCCTCATTGCCTGTTTTTTCTTGAGCAACTTCAAAATGCGAACTTTCGGGCTGCAATGGCACATCCCGGAAACAAGGAATTAGCACATAGGCAGCAATTCTATTTCTGGAAGAACTATAGGAACAACCGTCTGAAACATATTTTGCCGAGACCCCTTCCTGAACCTGTTCCCGCACTTCCTCCACCTGCTCCACCTCAGCAAGTTGTGCCTCCCGTTCCACCCGTTCCAGCTACAACTGTTTCTGTTACAGCTACTGCCCCAGCCCCTTCTCCTATGCAGTATTCGATGCCCCCCGGGTCTGCTCCAAAAGTTGAACCGAGGAATACTGGGGTTGATCGAAGAAAGAGGAAGAAAATGGCCAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:0140110 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med31

Protein Analysis

205

Amino Acids

23.46

Weight (kDa)

9.3

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med31	PF05669	29 - 121	7e-35	SOH1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	227
AciI	CCGC	3 cut(s)	44, 82, 417
AcoI	YGGCCR	1 cut(s)	603
AcuI	CTGAAG	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	196, 278, 560
AluBI	AGCT	2 cut(s)	476, 497
AluI	AGCT	2 cut(s)	476, 497
Alw26I	GTCTC	1 cut(s)	388
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	2 cut(s)	221, 539
AoxI	GGCC	1 cut(s)	603
ApeKI	GCWGC	4 cut(s)	85, 214, 296, 337
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	3 cut(s)	312, 540, 541
AvaI	CYCGRG	2 cut(s)	221, 539
AvaII	GGWCC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	605
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	4 cut(s)	97, 226, 283, 349
BciVI	GTATCC	1 cut(s)	255
BcnI	CCSGG	3 cut(s)	312, 540, 541
BcoDI	GTCTC	1 cut(s)	388
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	5 cut(s)	83, 86, 215, 297, 338
BlsI	GCNGC	5 cut(s)	84, 87, 216, 298, 339
Bme1390I	CCNGG	3 cut(s)	312, 540, 541
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	2 cut(s)	221, 539
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	3 cut(s)	312, 540, 541
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	3 cut(s)	312, 540, 541
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	538, 539, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	115, 577
Bse3DI	GCAATG	2 cut(s)	250, 306
BseDI	CCNNGG	3 cut(s)	538, 539, 563
BseGI	GGATG	2 cut(s)	178, 307
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	2 cut(s)	250, 306
BseMII	CTCAG	2 cut(s)	167, 455
BseNI	ACTGG	2 cut(s)	115, 577
BseXI	GCAGC	4 cut(s)	97, 226, 283, 349
BseYI	CCCAGC	1 cut(s)	505
BshFI	GGCC	1 cut(s)	605
BsiHKCI	CYCGRG	2 cut(s)	221, 539
BsiSI	CCGG	3 cut(s)	9, 312, 540
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	605
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	2 cut(s)	221, 539
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	3 cut(s)	44, 82, 417
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	2 cut(s)	166, 454
BspLI	GGNNCC	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	388
BsrDI	GCAATG	2 cut(s)	250, 306
BsrI	ACTGG	2 cut(s)	115, 577
BssECI	CCNNGG	3 cut(s)	538, 539, 563
BssMI	GATC	1 cut(s)	580
BssNAI	GTATAC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	374, 484
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	153, 441
BstF5I	GGATG	2 cut(s)	178, 307
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 94, 302, 451
BstSCI	CCNGG	3 cut(s)	310, 538, 539
BstSFI	CTRYAG	1 cut(s)	361
BstV1I	GCAGC	4 cut(s)	97, 226, 283, 349
BstZ17I	GTATAC	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	605
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	178, 307
BtsIMutI	CAGTG	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	67
Cfr9I	CCCGGG	1 cut(s)	539
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	190
CviJI	RGCY	8 cut(s)	32, 152, 179, 296, 476, 497, 509, 605
CviKI_1	RGCY	8 cut(s)	32, 152, 179, 296, 476, 497, 509, 605
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	153, 441
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	2 cut(s)	221, 539
EcoO109I	RGGNCCY	1 cut(s)	67
FaiI	YATR	6 cut(s)	228, 239, 333, 363, 384, 521
FaqI	GGGAC	1 cut(s)	204
FauI	CCCGC	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	5 cut(s)	83, 86, 215, 297, 338
FokI	GGATG	2 cut(s)	185, 294
Fsp4HI	GCNGC	5 cut(s)	83, 86, 215, 297, 338
GluI	GCNGC	5 cut(s)	83, 86, 215, 297, 338
GsaI	CCCAGC	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	605
HapII	CCGG	3 cut(s)	9, 312, 540
HgaI	GACGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	90, 157
HpaII	CCGG	3 cut(s)	9, 312, 540
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	156, 378
Hpy188III	TCNNGA	4 cut(s)	221, 266, 352, 404
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	410, 522
HpyCH4III	ACNGT	2 cut(s)	374, 484
HpyCH4V	TGCA	2 cut(s)	299, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 94, 302, 451
HpyF3I	CTNAG	2 cut(s)	153, 441
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	580
LmnI	GCTCC	2 cut(s)	439, 553
Lsp1109I	GCAGC	4 cut(s)	97, 226, 283, 349
LweI	GCATC	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	161, 490
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	4 cut(s)	194, 367, 597, 607
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	3 cut(s)	101, 323, 341
MluNI	TGGCCA	1 cut(s)	605
MnlI	CCTC	9 cut(s)	131, 163, 169, 258, 435, 450, 465, 558, 585
Mox20I	TGGCCA	1 cut(s)	605
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	605
MspI	CCGG	3 cut(s)	9, 312, 540
MspR9I	CCNGG	3 cut(s)	312, 540, 541
MwoI	GCNNNNNNNGC	4 cut(s)	18, 94, 302, 451
NciI	CCSGG	3 cut(s)	312, 540, 541
NdeII	GATC	1 cut(s)	580
NlaIV	GGNNCC	1 cut(s)	69
NmeAIII	GCCGAG	1 cut(s)	417
PaqCI	CACCTGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	90, 157
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	84, 87, 216, 298, 339
PpuMI	RGGWCCY	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SatI	GCNGC	5 cut(s)	83, 86, 215, 297, 338
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	3 cut(s)	312, 540, 541
SetI	ASST	5 cut(s)	412, 433, 442, 478, 499
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	101, 323, 341
SsiI	CCGC	3 cut(s)	44, 82, 417
StyD4I	CCNGG	3 cut(s)	310, 538, 539
TaaI	ACNGT	2 cut(s)	374, 484
TaqI	TCGA	3 cut(s)	99, 530, 583
TasI	AATT	3 cut(s)	101, 323, 341
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	90, 157
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	4 cut(s)	85, 214, 296, 337
TspDTI	ATGAA	1 cut(s)	172
TspMI	CCCGGG	1 cut(s)	539
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	67
XmaI	CCCGGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.