FvH4_7g27500

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013718
Physical Location & Seq
Forward (+)
20531025 .. 20532625
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27500.t1

Sequence Viewer

Length: 348 bp
ATGCTTGAAAACCCTGCATCCACAATAGTGGTCTGCCTAAAAGCTTCAACGCAGCAGAGACGAGAATCATCGGCTCCACCCATTCAGTCTGCGAGGGATGCTATGGTTTGGTTCACTCCGAGAATATATTGGCTTGATGACGAGATGAGTGGCGTGGCAGTTTGGTGGATGGGAACATATAGCATGCTTCTTCCCAAAGCTGCATCCTTCCACAGGAAATACTTGGATTTGTATAGTTATGATATGCCGTCTCCAGTTCATGATTATGTCACCAGGGAAAGAAATTGTGAAGATATTGCAATGTCATTGCTTGTTCTAATGCCACAGGAGGTGCGCCTATCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

116

Amino Acids

13.25

Weight (kDa)

5.59

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 29 - 105 2e-17 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 8, 48
AjnI CCWGG 1 cut(s) 272
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 2 cut(s) 44, 200
AluI AGCT 2 cut(s) 44, 200
Alw26I GTCTC 2 cut(s) 52, 255
ApeKI GCWGC 2 cut(s) 52, 200
AspLEI GCGC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 262
BbvI GCAGC 2 cut(s) 64, 187
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 52, 255
BisI GCNGC 2 cut(s) 53, 201
BlsI GCNGC 2 cut(s) 54, 202
Bme1390I CCNGG 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 3 cut(s) 26, 88, 212
BpmI CTGGAG 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 2 cut(s) 305, 306
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 4 cut(s) 17, 103, 174, 203
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMI GCAATG 2 cut(s) 305, 306
BseNI ACTGG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 64, 187
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 2 cut(s) 52, 255
BsmBI CGTCTC 2 cut(s) 52, 255
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 75
BsrDI GCAATG 2 cut(s) 305, 306
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 4 cut(s) 17, 103, 174, 203
BstHHI GCGC 1 cut(s) 336
BstMAI GTCTC 2 cut(s) 52, 255
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 272
BstV1I GCAGC 2 cut(s) 64, 187
BstXI CCANNNNNNTGG 1 cut(s) 28
BtsCI GGATG 4 cut(s) 17, 103, 174, 203
Cac8I GCNNGC 1 cut(s) 185
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 336
CviAII CATG 2 cut(s) 184, 260
CviJI RGCY 4 cut(s) 44, 74, 133, 200
CviKI_1 RGCY 4 cut(s) 44, 74, 133, 200
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 272
Esp3I CGTCTC 2 cut(s) 52, 255
FaeI CATG 2 cut(s) 187, 263
FatI CATG 2 cut(s) 183, 259
Fnu4HI GCNGC 2 cut(s) 53, 201
FokI GGATG 4 cut(s) 4, 110, 181, 190
Fsp4HI GCNGC 2 cut(s) 53, 201
GlaI GCGC 1 cut(s) 335
GluI GCNGC 2 cut(s) 53, 201
GsuI CTGGAG 1 cut(s) 237
HhaI GCGC 1 cut(s) 336
Hin1II CATG 2 cut(s) 187, 263
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 1 cut(s) 65
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 17, 203, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 187, 263
HspAI GCGC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 7 cut(s) 27, 199, 259, 267, 286, 311, 327
Lsp1109I GCAGC 2 cut(s) 64, 187
LweI GCATC 3 cut(s) 26, 88, 212
MaeIII GTNAC 1 cut(s) 268
MboII GAAGA 2 cut(s) 182, 302
MluCI AATT 1 cut(s) 283
MnlI CCTC 2 cut(s) 87, 322
MslI CAYNNNNRTG 2 cut(s) 26, 264
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 2 cut(s) 187, 263
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 26
PaeI GCATGC 1 cut(s) 187
PagI TCATGA 1 cut(s) 259
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 54, 202
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 75
RseI CAYNNNNRTG 2 cut(s) 26, 264
SatI GCNGC 2 cut(s) 53, 201
ScrFI CCNGG 1 cut(s) 274
SetI ASST 3 cut(s) 46, 202, 333
SfaNI GCATC 3 cut(s) 26, 88, 212
SmiMI CAYNNNNRTG 2 cut(s) 26, 264
SphI GCATGC 1 cut(s) 187
Sse9I AATT 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 272
TasI AATT 1 cut(s) 283
TfiI GAWTC 1 cut(s) 65
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 52, 200
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 211
XceI RCATGY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.