Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013718

Physical Location & Seq

Genomic Coordinates Forward (+)

34691025 .. 34692810

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0306700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGGCCATCTACGACATCTGTCGCCGATCTCTGGACATTGAGCGTCCCACTTACACCAATCTCAATCGCCTCATCTCTCAGAGTGGTATGCATTTTGAATGTGCAAAATGTTAACCAAGGAGAGGAGGATGAATTCGGCAACGCGAAGCTGAAAGTGACACGACAGCAGGCAGGGGAGGAATCAACCATGCATGTCCCTCGCAAGCGCGCTCAGGACTATGACCACGACGACTCTCTTACTGAGATCGACCTTGAGCTCCGCTACAGCTTCCACTGTAACTATCAGCTCCATGTAAAAAGAAGAATGACCAAGGAGGAGAGGCTGGCATTAGTGAAAGCAGGGAGGGAGGAAAGAGGGAAGTACATGGCTAGAGCTGCTGTAAAACAGAAGAAGGAGGGAGGCTCGAGCAATAAGCAGAGGCAACAAAAGTATGCCACTTGCTGCAAAAAGGGCAAAGGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

155

Amino Acids

17.61

Weight (kDa)

9.51

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27500
malus_domestica	MD01G1191300.v1.1
prunus_persica	Prupe.2G285700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375981
rosa_laevigata	RLG00000026638
rosa_multiflora	Rmu_co8445477.1_g000001 Rmu_sc0024503.1_g000003 Rmu_ssc0000116.1_g000010 Rmu_ssc0000116.1_g000011
rosa_roxburghii	Rroxscaffold_4G00282450
rosa_rugosa	Rorug01G0393300 Rorug01G0393400 Rorug02G0306700
rosa_samantha	Rh1AG404700 Rh1BG368200 Rh1CG381100 Rh1DG398100
rosa_wichuraiana	Rw1G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	146, 210
AciI	CCGC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	33, 124
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	6 cut(s)	151, 259, 270, 289, 377, 465
AluI	AGCT	6 cut(s)	151, 259, 270, 289, 377, 465
Alw21I	GWGCWC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	3 cut(s)	377, 444, 462
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	210, 212
AvaI	CYCGRG	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	364, 431
BccI	CCATC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	265
BisI	GCNGC	3 cut(s)	378, 445, 463
BlsI	GCNGC	3 cut(s)	379, 446, 464
BmeT110I	CYCGRG	1 cut(s)	406
BoxI	GACNNNNGTC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	118, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 124
BseDI	CCNNGG	2 cut(s)	118, 312
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	33, 124
BseMII	CTCAG	3 cut(s)	94, 227, 234
BsePI	GCGCGC	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	140, 332
BseXI	GCAGC	2 cut(s)	364, 431
Bsh1236I	CGCG	2 cut(s)	146, 210
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	406
BslFI	GGGAC	2 cut(s)	32, 182
BslI	CCNNNNNNNGG	2 cut(s)	33, 124
BsmFI	GGGAC	2 cut(s)	32, 182
BsnI	GGCC	1 cut(s)	7
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	28, 246
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	3 cut(s)	93, 226, 235
BspFNI	CGCG	2 cut(s)	146, 210
BssECI	CCNNGG	2 cut(s)	118, 312
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	2 cut(s)	28, 246
BssT1I	CCWWGG	2 cut(s)	118, 312
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	4 cut(s)	171, 206, 210, 327
BstDEI	CTNAG	3 cut(s)	80, 213, 243
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	2 cut(s)	146, 210
BstHHI	GCGC	2 cut(s)	210, 212
BstKTI	GATC	2 cut(s)	31, 249
BstMBI	GATC	2 cut(s)	28, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 453, 462
BstNSI	RCATGY	1 cut(s)	197
BstPAI	GACNNNNGTC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	2 cut(s)	146, 210
BstV1I	GCAGC	2 cut(s)	364, 431
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	4 cut(s)	171, 206, 210, 327
CfoI	GCGC	2 cut(s)	210, 212
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	4 cut(s)	190, 194, 293, 367
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	3 cut(s)	80, 213, 243
DpnI	GATC	2 cut(s)	30, 248
DpnII	GATC	2 cut(s)	28, 246
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	118, 312
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	134
EcoT14I	CCWWGG	2 cut(s)	118, 312
EcoT22I	ATGCAT	2 cut(s)	95, 195
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	118, 312
FaeI	CATG	4 cut(s)	193, 197, 296, 370
FaiI	YATR	7 cut(s)	91, 191, 195, 222, 294, 368, 435
FaqI	GGGAC	2 cut(s)	32, 182
FatI	CATG	4 cut(s)	189, 193, 292, 366
Fnu4HI	GCNGC	3 cut(s)	378, 445, 463
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	3 cut(s)	378, 445, 463
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	2 cut(s)	209, 211
GluI	GCNGC	3 cut(s)	378, 445, 463
HaeIII	GGCC	1 cut(s)	7
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	210, 212
Hin1II	CATG	4 cut(s)	193, 197, 296, 370
Hin6I	GCGC	2 cut(s)	208, 210
HinP1I	GCGC	2 cut(s)	208, 210
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	182, 233
HpaI	GTTAAC	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	34, 215
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	4 cut(s)	93, 106, 193, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 453, 462
HpyF3I	CTNAG	3 cut(s)	80, 213, 243
Hsp92II	CATG	4 cut(s)	193, 197, 296, 370
HspAI	GCGC	2 cut(s)	208, 210
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	28, 246
LmnI	GCTCC	2 cut(s)	264, 294
LpnPI	CCDG	6 cut(s)	19, 155, 159, 200, 311, 327
Lsp1109I	GCAGC	2 cut(s)	364, 431
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	157, 278
MalI	GATC	2 cut(s)	30, 248
MboI	GATC	2 cut(s)	28, 246
MboII	GAAGA	2 cut(s)	315, 403
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	227
Mph1103I	ATGCAT	2 cut(s)	95, 195
MseI	TTAA	1 cut(s)	114
MvnI	CGCG	2 cut(s)	146, 210
MwoI	GCNNNNNNNGC	3 cut(s)	377, 453, 462
NdeII	GATC	2 cut(s)	28, 246
NlaIII	CATG	4 cut(s)	193, 197, 296, 370
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	2 cut(s)	95, 195
NspI	RCATGY	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	406
PauI	GCGCGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	379, 446, 464
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	261
PspXI	VCTCGAGB	1 cut(s)	406
PteI	GCGCGC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	378, 445, 463
Sau3AI	GATC	2 cut(s)	28, 246
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	7 cut(s)	153, 255, 261, 272, 291, 379, 467
SfcI	CTRYAG	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	406
SlaI	CTCGAG	1 cut(s)	406
SmlI	CTYRAG	2 cut(s)	254, 406
SmoI	CTYRAG	2 cut(s)	254, 406
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	118, 312
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	249, 407
TasI	AATT	1 cut(s)	134
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	377, 444, 462
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	406
XspI	CTAG	1 cut(s)	372
Zsp2I	ATGCAT	2 cut(s)	95, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.