Rh1BG368200

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013718
Physical Location & Seq
Forward (+)
49850252 .. 49867949
17698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG368200.1

Sequence Viewer

Length: 858 bp
ATGAGTGTCATAGTAGTTGATTTGAACAGATCCAAGAGAGAAGGCAAAGCTGAAATTGCAGTTGTTTGGTCAAGGAATGCAATTGTTTGGAGAGGTGGCAGTGGTGATTCAAGGTTAAATGTTCAGAGGGATCGGCTCAGCTCTCTCATGGGCTGGCTCCCTCCCCAACCCAACTCCTCATTTCCAAGGGGTGGTGGATACACTGTTCTGATAAACACATGGAAGCAAAGCTCTGCTTTGAAGCAATCGGTTGCTCACTATGCCACGTGTGATGGGGTTGCTTCTATTCATGTGGTGTGGTCTGATAGTGATCCACGCTCGGAAACAATGAAGGCTCGTCTTGAAAAGATGGTGTTTTCAAAATCAAGAGCGGCTCAAAAACTTGACTTTAGGTTTGGGATGAGGCAGGATGAGGATTTGAACAACAGGTTCAAGCCGATTGAGGGGATGACAACTGATGCTGTGTTTTTGGTTGATGATGATGTGATTGTCTCGTGTGACACATTGGATTTTGCTTTCGGAGTTTGGCAGTCTGCGCCGAATGGTATGGTTGGGTTCACTCCTAGAATGCATTGGATTGATGAGGAGAAGAGTGGCGTGGCGAATTATGAGTATGGGGGATGGTGGTCAGTTTGGTGGATGGGGACATACAGCATGCTGCTTCCGAAAGCTGCATTCTTTCATAGGAAATACTTGGATTTGTATACTTACGATATGGCCTCATCCATTCGTGATTATGTCACCAGGGAGAGGAACTGTGAAGATATTGCTATGTCATTGCTTGTTGCTAATGCCACCGGTGCACCTCCGATTTGGGTGAAAGGTATTGAAAACAAAATAATAACTTATGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

285

Amino Acids

32.32

Weight (kDa)

6.91

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 67 - 275 1.4e-58 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 371
AccI GTMKAC 1 cut(s) 704
AciI CCGC 1 cut(s) 371
AclWI GGATC 3 cut(s) 24, 138, 305
AcvI CACGTG 1 cut(s) 267
AfiI CCNNNNNNNGG 3 cut(s) 191, 443, 750
AflIII ACRYGT 1 cut(s) 266
AgeI ACCGGT 1 cut(s) 797
AgsI TTSAA 8 cut(s) 25, 111, 241, 344, 360, 421, 433, 830
AjnI CCWGG 1 cut(s) 743
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 4 cut(s) 50, 141, 231, 671
AluI AGCT 4 cut(s) 50, 141, 231, 671
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 1 cut(s) 496
Alw44I GTGCAC 1 cut(s) 801
AlwI GGATC 3 cut(s) 24, 138, 305
AoxI GGCC 1 cut(s) 717
ApaLI GTGCAC 1 cut(s) 801
ApeKI GCWGC 2 cut(s) 658, 671
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AsiGI ACCGGT 1 cut(s) 797
AspLEI GCGC 1 cut(s) 538
AsuHPI GGTGA 3 cut(s) 116, 733, 829
BaeGI GKGCMC 1 cut(s) 805
BauI CACGAG 1 cut(s) 493
BbrPI CACGTG 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 805
BbvI GCAGC 2 cut(s) 645, 658
BccI CCATC 4 cut(s) 266, 343, 615, 634
BciT130I CCWGG 1 cut(s) 745
BciVI GTATCC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 1 cut(s) 564
BfuI GTATCC 1 cut(s) 191
BisI GCNGC 3 cut(s) 372, 659, 672
BlpI GCTNAGC 1 cut(s) 137
BlsI GCNGC 3 cut(s) 373, 660, 673
Bme1390I CCNGG 1 cut(s) 745
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 745
BmsI GCATC 1 cut(s) 448
Bpu1102I GCTNAGC 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 185, 744
BsaWI WCCGGW 1 cut(s) 797
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 443, 750
Bse118I RCCGGY 1 cut(s) 797
Bse3DI GCAATG 1 cut(s) 776
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 745
BseDI CCNNGG 2 cut(s) 185, 744
BseGI GGATG 6 cut(s) 405, 415, 453, 626, 645, 722
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 3 cut(s) 191, 443, 750
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 166, 599
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 2 cut(s) 645, 658
BshFI GGCC 1 cut(s) 719
BshTI ACCGGT 1 cut(s) 797
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 1 cut(s) 798
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 3 cut(s) 191, 443, 750
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 658
BsmI GAATGC 3 cut(s) 82, 573, 674
BsnI GGCC 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 3 cut(s) 29, 130, 310
Bsp1720I GCTNAGC 1 cut(s) 137
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 3 cut(s) 24, 138, 305
BsrBI CCGCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 797
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 2 cut(s) 185, 744
BssMI GATC 3 cut(s) 29, 130, 310
BssNAI GTATAC 1 cut(s) 705
BssSI CACGAG 1 cut(s) 493
BssT1I CCWWGG 1 cut(s) 185
Bst1107I GTATAC 1 cut(s) 705
Bst2BI CACGAG 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 745
Bst4CI ACNGT 2 cut(s) 205, 758
Bst6I CTCTTC 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 155, 656
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 6 cut(s) 405, 415, 453, 626, 645, 722
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 3 cut(s) 32, 133, 313
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 3 cut(s) 29, 130, 310
BstMWI GCNNNNNNNGC 4 cut(s) 56, 260, 535, 800
BstNI CCWGG 1 cut(s) 745
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 1 cut(s) 743
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 2 cut(s) 645, 658
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BstZ17I GTATAC 1 cut(s) 705
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 719
BtsCI GGATG 6 cut(s) 405, 415, 453, 626, 645, 722
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 106, 201
Cac8I GCNNGC 2 cut(s) 155, 656
CfoI GCGC 1 cut(s) 538
Cfr10I RCCGGY 1 cut(s) 797
CspAI ACCGGT 1 cut(s) 797
CviAII CATG 4 cut(s) 148, 219, 290, 655
DdeI CTNAG 1 cut(s) 137
DpnI GATC 3 cut(s) 31, 132, 312
DpnII GATC 3 cut(s) 29, 130, 310
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
Eco130I CCWWGG 1 cut(s) 185
Eco72I CACGTG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 743
EcoT14I CCWWGG 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 4 cut(s) 151, 222, 293, 658
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FaqI GGGAC 1 cut(s) 658
FatI CATG 4 cut(s) 147, 218, 289, 654
FblI GTMKAC 1 cut(s) 704
Fnu4HI GCNGC 3 cut(s) 372, 659, 672
FokI GGATG 6 cut(s) 412, 422, 460, 633, 652, 709
Fsp4HI GCNGC 3 cut(s) 372, 659, 672
FspBI CTAG 1 cut(s) 564
GlaI GCGC 1 cut(s) 537
GluI GCNGC 3 cut(s) 372, 659, 672
HaeIII GGCC 1 cut(s) 719
HapII CCGG 1 cut(s) 798
HhaI GCGC 1 cut(s) 538
Hin1II CATG 4 cut(s) 151, 222, 293, 658
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 798
HphI GGTGA 3 cut(s) 116, 733, 829
Hpy166II GTNNAC 3 cut(s) 558, 705, 803
Hpy188I TCNGA 7 cut(s) 126, 210, 304, 322, 521, 666, 810
Hpy188III TCNNGA 3 cut(s) 341, 366, 731
Hpy8I GTNNAC 3 cut(s) 558, 705, 803
HpyAV CCTTC 2 cut(s) 35, 325
HpyCH4III ACNGT 2 cut(s) 205, 758
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 5 cut(s) 59, 80, 571, 674, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 260, 535, 800
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 4 cut(s) 151, 222, 293, 658
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 3 cut(s) 29, 130, 310
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 6 cut(s) 139, 392, 412, 730, 757, 811
Lsp1109I GCAGC 2 cut(s) 645, 658
LweI GCATC 1 cut(s) 448
MaeI CTAG 1 cut(s) 564
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 497, 739
MalI GATC 3 cut(s) 31, 132, 312
MbiI CCGCTC 1 cut(s) 371
MboI GATC 3 cut(s) 29, 130, 310
MboII GAAGA 2 cut(s) 601, 773
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 3 cut(s) 54, 81, 604
Mph1103I ATGCAT 1 cut(s) 573
MseI TTAA 1 cut(s) 116
MspI CCGG 1 cut(s) 798
MspR9I CCNGG 1 cut(s) 745
MunI CAATTG 1 cut(s) 81
Mva1269I GAATGC 3 cut(s) 82, 573, 674
MvaI CCWGG 1 cut(s) 745
MwoI GCNNNNNNNGC 4 cut(s) 56, 260, 535, 800
NdeII GATC 3 cut(s) 29, 130, 310
NlaIII CATG 4 cut(s) 151, 222, 293, 658
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 497, 739
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 1 cut(s) 658
PaeI GCATGC 1 cut(s) 658
PctI GAATGC 3 cut(s) 82, 573, 674
PfeI GAWTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 191
PinAI ACCGGT 1 cut(s) 797
PkrI GCNGC 3 cut(s) 373, 660, 673
PmaCI CACGTG 1 cut(s) 267
PmlI CACGTG 1 cut(s) 267
Ppu21I YACGTR 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 743
PspCI CACGTG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 743
PspN4I GGNNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 29
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 3 cut(s) 372, 659, 672
Sau3AI GATC 3 cut(s) 29, 130, 310
ScrFI CCNGG 1 cut(s) 745
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 1 cut(s) 448
SgrAI CRCCGGYG 1 cut(s) 797
SphI GCATGC 1 cut(s) 658
Sse9I AATT 3 cut(s) 54, 81, 604
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 743
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 2 cut(s) 205, 758
TaiI ACGT 1 cut(s) 269
TasI AATT 3 cut(s) 54, 81, 604
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 106, 208
TseFI GTSAC 2 cut(s) 497, 739
TseI GCWGC 2 cut(s) 658, 671
Tsp45I GTSAC 2 cut(s) 497, 739
TspDTI ATGAA 3 cut(s) 278, 344, 671
TspRI CASTG 2 cut(s) 106, 208
Van91I CCANNNNNTGG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 801
XceI RCATGY 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 704
XspI CTAG 1 cut(s) 564
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.