Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013718

Physical Location & Seq

Genomic Coordinates Forward (+)

28231993 .. 28235646

Gene Structure 3654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G285700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTCCACGATCATTGGCATCCGCGACGCCGGGCCGACCGGTGCAGTGGCCTCAGCCATAGCCGCAGCCGACATGAACGGCGGAATCTACTCTCCGGCTAAGGAGAAAGCCGCCGCCAGAGGCGTCTACACCGGCCGCTCCCAGCTCGTTCGGCGGCTCCGAAGCCTGGTCTGCGCGGCTAAGCTCAAGCTCGTTGTGTGCGTTGTCATCTTCTCCGTCGTCGTTTTGGTCACCTCCTCCAGGCTTAGTTCTGTGATGGGTTGGGTCCCTCCCCACCCTAACCCCAACACCAGTTCTAGAGGTGGTGGATATACGGTGCTTATGAACACATGGAAGCGAAGCTCAGCTTTGAAGCAATCAATTGGGCACTATGCGTCATGTGGTGGCGTTGAAGCAATTCATGTGGTGTGGACGGACAGCGAACCACCCTCAGAATCTATGAAATACCATCTCGAAAAGATGGCATTTTCAAAGTCACAAGCAGCGAAAAAACCCAACTTTAAGTTTAGCATGAGCCAAGACGACGATTTGAACAATCGGTTTAAGCCAATTCAGGACCTTAGATCAGACGCCATATTCTCTGTTGATGATGATGTAAAAGTCCCCTGTTCCACTTTGGATTTTGCTTTCACGGTCTGGCAATCTGCACCCAACACTATGATTGGGTTTGTTCCTCGCATGCATTGGCTTGATAAGGAGAAGAGTGGCGTAGAGAAATATACGTATGGGGGGTGGTGGTCCGTTTGGTGGATGGGCACATATAGTCTGCTTCTTCCCAAAGCTGCATTCTTTCATAGGAACTACTTGAATTTGTATACCAACAATATGCCCTCATCTATCCGTGACTATGTCACCAGGGAGAGAAACTGTGAAGATATTGCTATGTCATTGCTTGTCGCTAATGCCACCGGTGCTCCTCCAATTTGGGTGAAAGGGAAGACGTATGAGATTGGATCATCTGGAATGAGCAGCATGAAAAGGCACAGCAAGAGGAGGAACAAGTGCCTCAACGATTTCATCTCCCTATTCGGAAGAATGCCGCTTGTATCAACCAACGTTAAGGCTGTAGATACGAGGCTTGAATGGTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

365

Amino Acids

40.55

Weight (kDa)

9.64

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27500
malus_domestica	MD01G1191300.v1.1
prunus_persica	Prupe.2G285700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375981
rosa_laevigata	RLG00000026638
rosa_multiflora	Rmu_co8445477.1_g000001 Rmu_sc0024503.1_g000003 Rmu_ssc0000116.1_g000010 Rmu_ssc0000116.1_g000011
rosa_roxburghii	Rroxscaffold_4G00282450
rosa_rugosa	Rorug01G0393300 Rorug01G0393400 Rorug02G0306700
rosa_samantha	Rh1AG404700 Rh1BG368200 Rh1CG381100 Rh1DG398100
rosa_wichuraiana	Rw1G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	2 cut(s)	126, 815
AccII	CGCG	2 cut(s)	24, 176
AciI	CCGC	9 cut(s)	22, 63, 81, 111, 114, 136, 154, 176, 1040
AclI	AACGTT	1 cut(s)	1056
AclWI	GGATC	1 cut(s)	961
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	808
AcyI	GRCGYC	3 cut(s)	27, 123, 570
AfiI	CCNNNNNNNGG	3 cut(s)	166, 240, 747
AgeI	ACCGGT	2 cut(s)	38, 908
AgsI	TTSAA	6 cut(s)	352, 392, 471, 532, 808, 1082
AjnI	CCWGG	3 cut(s)	165, 239, 854
AjuI	GAANNNNNNNTTGG	2 cut(s)	770, 802
AluBI	AGCT	6 cut(s)	145, 184, 190, 342, 347, 782
AluI	AGCT	6 cut(s)	145, 184, 190, 342, 347, 782
Alw21I	GWGCWC	1 cut(s)	916
AlwI	GGATC	1 cut(s)	961
AoxI	GGCC	3 cut(s)	32, 48, 133
ApeKI	GCWGC	4 cut(s)	65, 482, 782, 969
ApoI	RAATTY	1 cut(s)	808
AsiGI	ACCGGT	2 cut(s)	38, 908
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	4 cut(s)	32, 265, 556, 738
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	223, 844, 940
AvaII	GGWCC	3 cut(s)	265, 556, 738
BaeGI	GKGCMC	2 cut(s)	369, 758
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	1 cut(s)	916
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	4 cut(s)	77, 494, 769, 981
BccI	CCATC	4 cut(s)	250, 454, 456, 745
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	3 cut(s)	167, 241, 856
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	1065
BlpI	GCTNAGC	2 cut(s)	180, 343
Bme1390I	CCNGG	4 cut(s)	31, 167, 241, 856
Bme18I	GGWCC	3 cut(s)	265, 556, 738
BmgT120I	GGNCC	4 cut(s)	32, 265, 556, 738
BmiI	GGNNCC	3 cut(s)	158, 266, 267
BmrFI	CCNGG	4 cut(s)	31, 167, 241, 856
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	944
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	2 cut(s)	52, 99
Bpu1102I	GCTNAGC	2 cut(s)	180, 343
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	723
BsaHI	GRCGYC	3 cut(s)	27, 123, 570
BsaJI	CCNNGG	1 cut(s)	855
BsaWI	WCCGGW	2 cut(s)	38, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	898, 928
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 240, 747
Bse118I	RCCGGY	3 cut(s)	38, 131, 908
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	887
BseBI	CCWGG	3 cut(s)	167, 241, 856
BseDI	CCNNGG	1 cut(s)	855
BseGI	GGATG	2 cut(s)	18, 756
BseLI	CCNNNNNNNGG	3 cut(s)	166, 240, 747
BseMI	GCAATG	1 cut(s)	887
BseMII	CTCAG	3 cut(s)	66, 357, 444
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	3 cut(s)	226, 906, 1006
BseSI	GKGCMC	2 cut(s)	369, 758
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	4 cut(s)	77, 494, 769, 981
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	2 cut(s)	63, 630
Bsh1236I	CGCG	2 cut(s)	24, 176
Bsh1285I	CGRYCG	2 cut(s)	39, 136
BshFI	GGCC	3 cut(s)	34, 50, 135
BshTI	ACCGGT	2 cut(s)	38, 908
BsiEI	CGRYCG	2 cut(s)	39, 136
BsiHKAI	GWGCWC	1 cut(s)	916
BsiSI	CCGG	5 cut(s)	30, 39, 95, 132, 909
BslFI	GGGAC	2 cut(s)	251, 587
BslI	CCNNNNNNNGG	3 cut(s)	166, 240, 747
BsmFI	GGGAC	2 cut(s)	251, 587
BsmI	GAATGC	2 cut(s)	785, 1041
BsnI	GGCC	3 cut(s)	34, 50, 135
Bsp1286I	GDGCHC	3 cut(s)	369, 758, 916
Bsp143I	GATC	3 cut(s)	9, 563, 953
Bsp1720I	GCTNAGC	2 cut(s)	180, 343
BspACI	CCGC	9 cut(s)	22, 63, 81, 111, 114, 136, 154, 176, 1040
BspANI	GGCC	3 cut(s)	34, 50, 135
BspCNI	CTCAG	3 cut(s)	65, 356, 443
BspFNI	CGCG	2 cut(s)	24, 176
BspLI	GGNNCC	3 cut(s)	158, 266, 267
BspPI	GGATC	1 cut(s)	961
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	887
BsrFI	RCCGGY	3 cut(s)	38, 131, 908
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	3 cut(s)	38, 131, 908
BssECI	CCNNGG	1 cut(s)	855
BssMI	GATC	3 cut(s)	9, 563, 953
BssNAI	GTATAC	1 cut(s)	816
BssNI	GRCGYC	3 cut(s)	27, 123, 570
Bst1107I	GTATAC	1 cut(s)	816
Bst2UI	CCWGG	3 cut(s)	167, 241, 856
Bst4CI	ACNGT	3 cut(s)	316, 634, 869
Bst6I	CTCTTC	1 cut(s)	695
BstACI	GRCGYC	3 cut(s)	27, 123, 570
BstBAI	YACGTR	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	7 cut(s)	52, 99, 180, 245, 343, 430, 560
BstEII	GGTNACC	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	18, 756
BstFNI	CGCG	2 cut(s)	24, 176
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	12, 566, 956
BstMBI	GATC	3 cut(s)	9, 563, 953
BstMCI	CGRYCG	2 cut(s)	39, 136
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 151, 171, 911
BstNI	CCWGG	3 cut(s)	167, 241, 856
BstNSI	RCATGY	1 cut(s)	682
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	4 cut(s)	29, 165, 239, 854
BstSFI	CTRYAG	1 cut(s)	1065
BstSLI	GKGCMC	2 cut(s)	369, 758
BstSNI	TACGTA	1 cut(s)	723
BstUI	CGCG	2 cut(s)	24, 176
BstV1I	GCAGC	4 cut(s)	77, 494, 769, 981
BstV2I	GAAGAC	1 cut(s)	944
BstZ17I	GTATAC	1 cut(s)	816
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	34, 50, 135
BtsCI	GGATG	2 cut(s)	18, 756
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	680
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	3 cut(s)	38, 131, 908
Cfr13I	GGNCC	4 cut(s)	32, 265, 556, 738
CseI	GACGC	4 cut(s)	35, 112, 363, 578
CspAI	ACCGGT	2 cut(s)	38, 908
CspCI	CAANNNNNGTGG	3 cut(s)	30, 384, 419
CviAII	CATG	7 cut(s)	73, 330, 378, 401, 511, 679, 973
DdeI	CTNAG	7 cut(s)	52, 99, 180, 245, 343, 430, 560
DpnI	GATC	3 cut(s)	11, 565, 955
DpnII	GATC	3 cut(s)	9, 563, 953
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	695
EarI	CTCTTC	1 cut(s)	695
EciI	GGCGGA	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	133
Eco105I	TACGTA	1 cut(s)	723
Eco47I	GGWCC	3 cut(s)	265, 556, 738
Eco52I	CGGCCG	1 cut(s)	133
Eco91I	GGTNACC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	2 cut(s)	265, 556
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	165, 239, 854
EcoT22I	ATGCAT	1 cut(s)	684
FaeI	CATG	7 cut(s)	76, 333, 381, 404, 514, 682, 976
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FaqI	GGGAC	2 cut(s)	251, 587
FatI	CATG	7 cut(s)	72, 329, 377, 400, 510, 678, 972
FblI	GTMKAC	2 cut(s)	126, 815
FokI	GGATG	2 cut(s)	5, 763
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	175
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	3 cut(s)	34, 50, 135
HapII	CCGG	5 cut(s)	30, 39, 95, 132, 909
HgaI	GACGC	4 cut(s)	35, 112, 363, 578
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	3 cut(s)	27, 123, 570
Hin1II	CATG	7 cut(s)	76, 333, 381, 404, 514, 682, 976
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	84, 434
HpaII	CCGG	5 cut(s)	30, 39, 95, 132, 909
HphI	GGTGA	3 cut(s)	223, 844, 940
Hpy166II	GTNNAC	4 cut(s)	6, 127, 411, 816
Hpy188I	TCNGA	4 cut(s)	161, 433, 568, 1031
Hpy188III	TCNNGA	4 cut(s)	297, 452, 554, 960
Hpy8I	GTNNAC	4 cut(s)	6, 127, 411, 816
Hpy99I	CGWCG	4 cut(s)	29, 221, 224, 527
HpyCH4III	ACNGT	3 cut(s)	316, 634, 869
HpyCH4IV	ACGT	3 cut(s)	722, 941, 1056
HpyCH4V	TGCA	4 cut(s)	44, 647, 682, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 151, 171, 911
HpyF3I	CTNAG	7 cut(s)	52, 99, 180, 245, 343, 430, 560
HpySE526I	ACGT	3 cut(s)	722, 941, 1056
Hsp92I	GRCGYC	3 cut(s)	27, 123, 570
Hsp92II	CATG	7 cut(s)	76, 333, 381, 404, 514, 682, 976
HspAI	GCGC	1 cut(s)	174
KflI	GGGWCCC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	9, 563, 953
LmnI	GCTCC	3 cut(s)	143, 162, 919
Lsp1109I	GCAGC	4 cut(s)	77, 494, 769, 981
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	3 cut(s)	722, 941, 1056
MaeIII	GTNAC	4 cut(s)	229, 474, 842, 850
MalI	GATC	3 cut(s)	11, 565, 955
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	3 cut(s)	9, 563, 953
MboII	GAAGA	6 cut(s)	202, 712, 764, 884, 949, 1044
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	3 cut(s)	369, 758, 916
MluCI	AATT	5 cut(s)	360, 396, 549, 808, 921
Mph1103I	ATGCAT	1 cut(s)	684
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	3 cut(s)	501, 543, 1059
MspI	CCGG	5 cut(s)	30, 39, 95, 132, 909
MspR9I	CCNGG	4 cut(s)	31, 167, 241, 856
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	2 cut(s)	785, 1041
MvaI	CCWGG	3 cut(s)	167, 241, 856
MvnI	CGCG	2 cut(s)	24, 176
MwoI	GCNNNNNNNGC	4 cut(s)	62, 151, 171, 911
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	9, 563, 953
NlaIII	CATG	7 cut(s)	76, 333, 381, 404, 514, 682, 976
NlaIV	GGNNCC	3 cut(s)	158, 266, 267
NmuCI	GTSAC	4 cut(s)	229, 474, 842, 850
NsiI	ATGCAT	1 cut(s)	684
NspI	RCATGY	1 cut(s)	682
PaeI	GCATGC	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	2 cut(s)	157, 198
PctI	GAATGC	2 cut(s)	785, 1041
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	84, 434
PflFI	GACNNNGTC	1 cut(s)	848
PinAI	ACCGGT	2 cut(s)	38, 908
Ppu21I	YACGTR	1 cut(s)	723
PpuMI	RGGWCCY	2 cut(s)	265, 556
Psp1406I	AACGTT	1 cut(s)	1056
Psp5II	RGGWCCY	2 cut(s)	265, 556
Psp6I	CCWGG	3 cut(s)	165, 239, 854
PspEI	GGTNACC	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	3 cut(s)	165, 239, 854
PspN4I	GGNNCC	3 cut(s)	158, 266, 267
PspPI	GGNCC	4 cut(s)	32, 265, 556, 738
PspPPI	RGGWCCY	2 cut(s)	265, 556
PsyI	GACNNNGTC	1 cut(s)	848
SaqAI	TTAA	3 cut(s)	501, 543, 1059
Sau3AI	GATC	3 cut(s)	9, 563, 953
Sau96I	GGNCC	4 cut(s)	32, 265, 556, 738
ScrFI	CCNGG	4 cut(s)	31, 167, 241, 856
SduI	GDGCHC	3 cut(s)	369, 758, 916
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	1065
SgrAI	CRCCGGYG	1 cut(s)	908
SinI	GGWCC	3 cut(s)	265, 556, 738
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SnaBI	TACGTA	1 cut(s)	723
SphI	GCATGC	1 cut(s)	682
Sse9I	AATT	5 cut(s)	360, 396, 549, 808, 921
SsiI	CCGC	9 cut(s)	22, 63, 81, 111, 114, 136, 154, 176, 1040
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	4 cut(s)	29, 165, 239, 854
TaaI	ACNGT	3 cut(s)	316, 634, 869
TaiI	ACGT	3 cut(s)	725, 944, 1059
TaqI	TCGA	1 cut(s)	453
TasI	AATT	5 cut(s)	360, 396, 549, 808, 921
TauI	GCSGC	7 cut(s)	65, 113, 116, 138, 157, 179, 1042
TfiI	GAWTC	2 cut(s)	84, 434
Tru1I	TTAA	3 cut(s)	501, 543, 1059
Tru9I	TTAA	3 cut(s)	501, 543, 1059
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	4 cut(s)	229, 474, 842, 850
TseI	GCWGC	4 cut(s)	65, 482, 782, 969
Tsp45I	GTSAC	4 cut(s)	229, 474, 842, 850
TspDTI	ATGAA	7 cut(s)	89, 338, 389, 455, 782, 989, 1006
TspGWI	ACGGA	4 cut(s)	205, 428, 730, 830
TspRI	CASTG	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	848
VpaK11BI	GGWCC	3 cut(s)	265, 556, 738
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	1 cut(s)	808
XbaI	TCTAGA	1 cut(s)	296
XceI	RCATGY	1 cut(s)	682
XmiI	GTMKAC	2 cut(s)	126, 815
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.