Rh1CG381100

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013718
Physical Location & Seq
Forward (+)
65098116 .. 65111539
13424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG381100.1

Sequence Viewer

Length: 990 bp
ATGTCCACAACCATCTCCATCCGCGACTCCGCCCCCACCGCCGCTATGGCCGCAGCCATATCCTCCTCCGACATGAATGGCGGATTCTACTCCCCAGCCAAAGCCAAAGCCAAAGCCACCAGACCCCTCTTCAGCCCACGCTTCCAGCCATTTCGGCGTCTCCGCCACCTCTTTTGCCCGCGCAAGCTCAGACTCGTCGCCTCTGTTTTCCTTCTCTGCTTCGTCGTTTTCCTCTCCTCCAGGCTCAGCTCTCTCATGGGCTGGCTCCCTCCCCAACCCAACTCCTCATTTCCAAGGGGTGGTGGATACACTGTTCTGATAAACACATGGAAGCAAAGCTCTGCTTTGAAGCAATCGGTTGCTCACTATGCCACGTGTGATGGGGTTGCTTCTATTCATGTGGTGTGGTCTGATAGTGATCCACGCTCGGAAACAATGAAGGCTCGTCTTGAAAAGATGGTGTTTTCAAAATCAAGAGCGGCTCAAAAACTTGACTTTAGGTTTGGGATGAGGCAGGATGAGGATTTGAACAACAGGTTCAAGCCGATTGAGGGGATGACAACTGATGCTGTGTTTTTGGTTGATGATGATGTGATTGTCTCGTGTGACACATTGGATTTTGCTTTCGGAGTTTGGCAGTCTGCGCCGAATGGTATGGTTGGGTTCACTCCTAGAATGCATTGGATTGATGAGGAGAAGAGTGGCGTGGCGAATTATGAGTATGGGGGATGGTGGTCAGTTTGGTGGATGGGGACATACAGCATGCTGCTTCCGAAAGCTGCATTCTTTCATAGGAAATACTTGGATTTGTATACTTACGATATGGCCTCATCCATTCGTGATTATGTCACCAGGGAGAGGAACTGTGAAGATATTGCTATGTCATTGCTTGTTGCTAATGCCACCGGTGCACCTCCGATTTGGGTGAAAGGTAGGTTTGCATTTGCTTTTCTTGACTCAGGTTTTGTGTTGATTTCCGTATGTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

329

Amino Acids

36.99

Weight (kDa)

9.19

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 103 - 312 1.9e-58 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AccBSI CCGCTC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 812
AccII CGCG 2 cut(s) 24, 181
AciI CCGC 9 cut(s) 22, 30, 39, 42, 51, 81, 163, 179, 479
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 115
AcvI CACGTG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 157
AfiI CCNNNNNNNGG 3 cut(s) 299, 551, 858
AflIII ACRYGT 1 cut(s) 374
AgeI ACCGGT 1 cut(s) 905
AgsI TTSAA 5 cut(s) 349, 452, 468, 529, 541
AjnI CCWGG 2 cut(s) 239, 851
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 4 cut(s) 187, 249, 339, 779
AluI AGCT 4 cut(s) 187, 249, 339, 779
Alw21I GWGCWC 1 cut(s) 913
Alw26I GTCTC 2 cut(s) 164, 604
Alw44I GTGCAC 1 cut(s) 909
AlwI GGATC 1 cut(s) 413
AoxI GGCC 2 cut(s) 48, 825
ApaLI GTGCAC 1 cut(s) 909
ApeKI GCWGC 3 cut(s) 53, 766, 779
ArsI GACNNNNNNTTYG 4 cut(s) 485, 517, 947, 979
AsiGI ACCGGT 1 cut(s) 905
AspLEI GCGC 2 cut(s) 183, 646
AsuHPI GGTGA 2 cut(s) 841, 937
BaeGI GKGCMC 1 cut(s) 913
BauI CACGAG 1 cut(s) 601
BbrPI CACGTG 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 913
BbvI GCAGC 3 cut(s) 65, 753, 766
BccI CCATC 6 cut(s) 20, 26, 374, 451, 723, 742
BciT130I CCWGG 2 cut(s) 241, 853
BciVI GTATCC 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 164, 604
BfaI CTAG 1 cut(s) 672
BfmI CTRYAG 1 cut(s) 986
BfuI GTATCC 1 cut(s) 299
BglI GCCNNNNNGGC 2 cut(s) 47, 154
BisI GCNGC 6 cut(s) 42, 51, 54, 480, 767, 780
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 6 cut(s) 43, 52, 55, 481, 768, 781
Bme1390I CCNGG 2 cut(s) 241, 853
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 241, 853
BmsI GCATC 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 223
Bpu1102I GCTNAGC 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 375
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 293, 852
BsaWI WCCGGW 1 cut(s) 905
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 551, 858
Bse118I RCCGGY 1 cut(s) 905
Bse3DI GCAATG 1 cut(s) 884
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 241, 853
BseDI CCNNGG 2 cut(s) 293, 852
BseGI GGATG 7 cut(s) 18, 513, 523, 561, 734, 753, 830
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 299, 551, 858
BseMI GCAATG 1 cut(s) 884
BseMII CTCAG 3 cut(s) 202, 259, 972
BseRI GAGGAG 4 cut(s) 55, 226, 274, 707
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 3 cut(s) 65, 753, 766
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 24, 181
BshFI GGCC 2 cut(s) 50, 827
BshTI ACCGGT 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 913
BsiSI CCGG 1 cut(s) 906
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 3 cut(s) 299, 551, 858
BsmAI GTCTC 2 cut(s) 164, 604
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 766
BsmI GAATGC 2 cut(s) 681, 782
BsnI GGCC 2 cut(s) 50, 827
Bsp1286I GDGCHC 1 cut(s) 913
Bsp143I GATC 1 cut(s) 418
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 9 cut(s) 22, 30, 39, 42, 51, 81, 163, 179, 479
BspANI GGCC 2 cut(s) 50, 827
BspCNI CTCAG 3 cut(s) 201, 258, 971
BspFNI CGCG 2 cut(s) 24, 181
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 905
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 2 cut(s) 293, 852
BssMI GATC 1 cut(s) 418
BssNAI GTATAC 1 cut(s) 813
BssNI GRCGYC 1 cut(s) 157
BssSI CACGAG 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 293
Bst1107I GTATAC 1 cut(s) 813
Bst2BI CACGAG 1 cut(s) 601
Bst2UI CCWGG 2 cut(s) 241, 853
Bst4CI ACNGT 2 cut(s) 313, 866
Bst6I CTCTTC 2 cut(s) 134, 692
BstACI GRCGYC 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 179, 185, 263, 764
BstDEI CTNAG 3 cut(s) 188, 245, 958
BstF5I GGATG 7 cut(s) 18, 513, 523, 561, 734, 753, 830
BstFNI CGCG 2 cut(s) 24, 181
BstHHI GCGC 2 cut(s) 183, 646
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 2 cut(s) 164, 604
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 7 cut(s) 38, 47, 50, 154, 368, 643, 908
BstNI CCWGG 2 cut(s) 241, 853
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 2 cut(s) 239, 851
BstSFI CTRYAG 1 cut(s) 986
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 2 cut(s) 24, 181
BstV1I GCAGC 3 cut(s) 65, 753, 766
BstZ17I GTATAC 1 cut(s) 813
BsuI GTATCC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 50, 827
BtsCI GGATG 7 cut(s) 18, 513, 523, 561, 734, 753, 830
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 4 cut(s) 179, 185, 263, 764
CfoI GCGC 2 cut(s) 183, 646
Cfr10I RCCGGY 1 cut(s) 905
CseI GACGC 1 cut(s) 146
CspAI ACCGGT 1 cut(s) 905
CspCI CAANNNNNGTGG 2 cut(s) 155, 190
CviAII CATG 5 cut(s) 73, 256, 327, 398, 763
DdeI CTNAG 3 cut(s) 188, 245, 958
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 134, 692
EarI CTCTTC 2 cut(s) 134, 692
EciI GGCGGA 3 cut(s) 19, 96, 152
Eco130I CCWWGG 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 115
Eco72I CACGTG 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 239, 851
EcoT14I CCWWGG 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 5 cut(s) 76, 259, 330, 401, 766
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 1 cut(s) 766
FatI CATG 5 cut(s) 72, 255, 326, 397, 762
FauI CCCGC 1 cut(s) 186
FblI GTMKAC 1 cut(s) 812
Fnu4HI GCNGC 6 cut(s) 42, 51, 54, 480, 767, 780
FokI GGATG 7 cut(s) 5, 520, 530, 568, 741, 760, 817
Fsp4HI GCNGC 6 cut(s) 42, 51, 54, 480, 767, 780
FspBI CTAG 1 cut(s) 672
GlaI GCGC 2 cut(s) 182, 645
GluI GCNGC 6 cut(s) 42, 51, 54, 480, 767, 780
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 2 cut(s) 50, 827
HapII CCGG 1 cut(s) 906
HgaI GACGC 1 cut(s) 146
HhaI GCGC 2 cut(s) 183, 646
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 5 cut(s) 76, 259, 330, 401, 766
Hin6I GCGC 2 cut(s) 181, 644
HinP1I GCGC 2 cut(s) 181, 644
HinfI GANTC 4 cut(s) 26, 84, 192, 956
HpaII CCGG 1 cut(s) 906
HphI GGTGA 2 cut(s) 841, 937
Hpy166II GTNNAC 4 cut(s) 6, 666, 813, 911
Hpy188I TCNGA 8 cut(s) 70, 191, 318, 412, 430, 629, 774, 918
Hpy188III TCNNGA 4 cut(s) 449, 474, 839, 953
Hpy8I GTNNAC 4 cut(s) 6, 666, 813, 911
Hpy99I CGWCG 2 cut(s) 200, 227
HpyAV CCTTC 2 cut(s) 221, 433
HpyCH4III ACNGT 2 cut(s) 313, 866
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 4 cut(s) 679, 782, 911, 941
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 47, 50, 154, 368, 643, 908
HpyF3I CTNAG 3 cut(s) 188, 245, 958
HpySE526I ACGT 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 5 cut(s) 76, 259, 330, 401, 766
HspAI GCGC 2 cut(s) 181, 644
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 3 cut(s) 65, 753, 766
LweI GCATC 1 cut(s) 556
MaeI CTAG 1 cut(s) 672
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 605, 847
MalI GATC 1 cut(s) 420
MbiI CCGCTC 1 cut(s) 479
MboI GATC 1 cut(s) 418
MboII GAAGA 3 cut(s) 121, 709, 881
MhlI GDGCHC 1 cut(s) 913
MluCI AATT 1 cut(s) 712
MlyI GAGTC 3 cut(s) 20, 186, 950
MmeI TCCRAC 1 cut(s) 93
Mph1103I ATGCAT 1 cut(s) 681
MspI CCGG 1 cut(s) 906
MspR9I CCNGG 2 cut(s) 241, 853
Mva1269I GAATGC 2 cut(s) 681, 782
MvaI CCWGG 2 cut(s) 241, 853
MvnI CGCG 2 cut(s) 24, 181
MwoI GCNNNNNNNGC 7 cut(s) 38, 47, 50, 154, 368, 643, 908
NdeII GATC 1 cut(s) 418
NlaIII CATG 5 cut(s) 76, 259, 330, 401, 766
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 2 cut(s) 605, 847
NsiI ATGCAT 1 cut(s) 681
NspI RCATGY 1 cut(s) 766
PaeI GCATGC 1 cut(s) 766
PctI GAATGC 2 cut(s) 681, 782
PfeI GAWTC 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 905
PkrI GCNGC 6 cut(s) 43, 52, 55, 481, 768, 781
PleI GAGTC 3 cut(s) 20, 186, 950
PmaCI CACGTG 1 cut(s) 375
PmlI CACGTG 1 cut(s) 375
PpsI GAGTC 3 cut(s) 20, 186, 950
Ppu21I YACGTR 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 239, 851
PspCI CACGTG 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 2 cut(s) 239, 851
PspN4I GGNNCC 1 cut(s) 266
SatI GCNGC 6 cut(s) 42, 51, 54, 480, 767, 780
Sau3AI GATC 1 cut(s) 418
SchI GAGTC 3 cut(s) 20, 186, 950
ScrFI CCNGG 2 cut(s) 241, 853
SduI GDGCHC 1 cut(s) 913
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 986
SgrAI CRCCGGYG 1 cut(s) 905
SphI GCATGC 1 cut(s) 766
Sse9I AATT 1 cut(s) 712
SsiI CCGC 9 cut(s) 22, 30, 39, 42, 51, 81, 163, 179, 479
SspMI CTAG 1 cut(s) 672
StyD4I CCNGG 2 cut(s) 239, 851
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 313, 866
TaiI ACGT 1 cut(s) 377
TasI AATT 1 cut(s) 712
TauI GCSGC 3 cut(s) 44, 53, 482
TfiI GAWTC 1 cut(s) 84
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 2 cut(s) 605, 847
TseI GCWGC 3 cut(s) 53, 766, 779
Tsp45I GTSAC 2 cut(s) 605, 847
TspDTI ATGAA 4 cut(s) 89, 386, 452, 779
TspGWI ACGGA 1 cut(s) 967
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 299
VneI GTGCAC 1 cut(s) 909
XceI RCATGY 1 cut(s) 766
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 812
XspI CTAG 1 cut(s) 672
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.