RLG00000026638

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013718
Physical Location & Seq
Reverse (-)
4501374 .. 4503907
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026638

Sequence Viewer

Length: 1095 bp
ATGTCCACAACCATCTCCATCCGCGACTCCGCCCCGACCGCCGCTATGGCCGCAGCCATATCCTCCTCCGACATGAATGGCGGATTCTACTCCCCAGCCAAAGCCAAAGCCAAAGCCGCTACCAGACCCCTCTTCAGCCCACGCTTCCCTCCATTTCGGCGTCTCTGCCACCTCTTTTGCCCGCGCAAGCTCGGACTCGTCGCCTCTGTTTTCCTTCTCTGCTTCGTCGTTTTCCTCTCCTCCAGGCTCAGCTCTCTCATGGGCTGGCTCCCTCCCCAACCCAACTCCTCATTTCCAAGGGGTGGTGGATACACTGTTCTGATAAACACACGGAAGCAAAGCTCTGCTTTGAAGCAATCGGTTGCTCACTATGCCACGTGTGATGGGGTTGCTGCTATTCATGTGGTGTGGTCTGGTAGTGATCCGCTCTCGGAAACTTTGAAGTCTCGTCTTGAAAAGATGGTGTTTTCAAAGTCAAGAGCAGCTCAAAAACCTGACTTTAGGTTTGGGATGAGGCAGGATGAGGATTTGAACAATAGGTTCAAGACGATTGAGGGGATGACAACTGATGCTCTGTTTTCGGTTGATGATGATGTGCTTGTCTCGTGTGACACATTGGATTTTGCTTTCGGAGTTTGGCAATCTGCACCGAGTGCTATGGTTGGGTTCACTCCAAGAATGCATTGGCTTGATGAGAAGAAGAGTGGCGAGGCGAAATATGAGTATGGGGGATGGTGGTCAGTTTGGTGGATGGGGACATACAGCATGCTGCTTCCGAAAGCTGCATTCCTTCATAGGAAATACTTGGATTTGTATACTTACGATATGACCGCATCCATTCGTGATTATGTCACCAGGGAAAGAAACTGTGAAGATATTGCTATGTCATTGCTTGTTGCTAATGCCACCGGTGCACCTCCGATTTGGGTGAAAGGGAAGATGCATGAGCTTGGATCTTCAGGAATTAGCGGTCTGAAAAGGCACAGCAAGAGTCGCAACAAGTGCCCCAATGATCTCATCTCCCTCTTCAGAAGAATTCCCCTTGTACAAACTAACGTTAAAGCTGTCGATGCCAGGTTTGAATGGTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

365

Amino Acids

40.77

Weight (kDa)

9.55

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 104 - 355 7.9e-64 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 815
AccII CGCG 2 cut(s) 24, 184
AclI AACGTT 1 cut(s) 1056
AclWI GGATC 2 cut(s) 416, 961
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 1035
AcuI CTGAAG 3 cut(s) 118, 942, 1012
AcvI CACGTG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 1 cut(s) 1047
AfiI CCNNNNNNNGG 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 377
AgeI ACCGGT 1 cut(s) 908
AgsI TTSAA 7 cut(s) 352, 442, 455, 471, 532, 544, 1082
AjnI CCWGG 3 cut(s) 242, 854, 1073
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 7 cut(s) 190, 252, 342, 485, 782, 949, 1064
AluI AGCT 7 cut(s) 190, 252, 342, 485, 782, 949, 1064
Alw21I GWGCWC 1 cut(s) 916
Alw26I GTCTC 3 cut(s) 167, 450, 607
Alw44I GTGCAC 1 cut(s) 912
AlwI GGATC 2 cut(s) 416, 961
AoxI GGCC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 912
ApeKI GCWGC 5 cut(s) 53, 392, 482, 769, 782
ApoI RAATTY 1 cut(s) 1035
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AsiGI ACCGGT 1 cut(s) 908
AspLEI GCGC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 844, 940
BaeGI GKGCMC 2 cut(s) 916, 1007
BauI CACGAG 1 cut(s) 604
BbrPI CACGTG 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 916
BbvI GCAGC 5 cut(s) 65, 379, 494, 756, 769
BccI CCATC 6 cut(s) 20, 26, 377, 454, 726, 745
BciT130I CCWGG 3 cut(s) 244, 856, 1075
BciVI GTATCC 1 cut(s) 302
BcoDI GTCTC 3 cut(s) 167, 450, 607
BfuI GTATCC 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 8 cut(s) 42, 51, 54, 117, 393, 483, 770, 783
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 8 cut(s) 43, 52, 55, 118, 394, 484, 771, 784
Bme1390I CCNGG 3 cut(s) 244, 856, 1075
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 3 cut(s) 244, 856, 1075
BmsI GCATC 4 cut(s) 559, 842, 930, 1060
BpmI CTGGAG 1 cut(s) 226
Bpu1102I GCTNAGC 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 296, 855
BsaWI WCCGGW 1 cut(s) 908
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 908
Bse3DI GCAATG 1 cut(s) 887
BseBI CCWGG 3 cut(s) 244, 856, 1075
BseDI CCNNGG 2 cut(s) 296, 855
BseGI GGATG 7 cut(s) 18, 516, 526, 564, 737, 756, 833
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 1 cut(s) 887
BseMII CTCAG 1 cut(s) 262
BseRI GAGGAG 3 cut(s) 55, 229, 277
BseSI GKGCMC 2 cut(s) 916, 1007
BseXI GCAGC 5 cut(s) 65, 379, 494, 756, 769
BseYI CCCAGC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 2 cut(s) 24, 184
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 908
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 916
BsiSI CCGG 1 cut(s) 909
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 3 cut(s) 167, 450, 607
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 769
BsmI GAATGC 2 cut(s) 684, 785
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 916, 1007
Bsp1407I TGTACA 1 cut(s) 1045
Bsp143I GATC 3 cut(s) 421, 953, 1012
Bsp1720I GCTNAGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 2 cut(s) 24, 184
BspLI GGNNCC 1 cut(s) 269
BspPI GGATC 2 cut(s) 416, 961
BsrBI CCGCTC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 887
BsrFI RCCGGY 1 cut(s) 908
BsrGI TGTACA 1 cut(s) 1045
BssAI RCCGGY 1 cut(s) 908
BssECI CCNNGG 2 cut(s) 296, 855
BssMI GATC 3 cut(s) 421, 953, 1012
BssNAI GTATAC 1 cut(s) 816
BssNI GRCGYC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 604
BssT1I CCWWGG 1 cut(s) 296
Bst1107I GTATAC 1 cut(s) 816
Bst2BI CACGAG 1 cut(s) 604
Bst2UI CCWGG 3 cut(s) 244, 856, 1075
Bst4CI ACNGT 2 cut(s) 316, 869
Bst6I CTCTTC 3 cut(s) 137, 695, 1031
BstACI GRCGYC 1 cut(s) 160
BstAPI GCANNNNNTGC 2 cut(s) 653, 1002
BstAUI TGTACA 1 cut(s) 1045
BstBAI YACGTR 1 cut(s) 378
BstC8I GCNNGC 4 cut(s) 182, 188, 266, 767
BstDEI CTNAG 1 cut(s) 248
BstF5I GGATG 7 cut(s) 18, 516, 526, 564, 737, 756, 833
BstFNI CGCG 2 cut(s) 24, 184
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 3 cut(s) 424, 956, 1015
BstMAI GTCTC 3 cut(s) 167, 450, 607
BstMBI GATC 3 cut(s) 421, 953, 1012
BstMCI CGRYCG 1 cut(s) 39
BstNI CCWGG 3 cut(s) 244, 856, 1075
BstNSI RCATGY 1 cut(s) 769
BstSCI CCNGG 3 cut(s) 242, 854, 1073
BstSLI GKGCMC 2 cut(s) 916, 1007
BstUI CGCG 2 cut(s) 24, 184
BstV1I GCAGC 5 cut(s) 65, 379, 494, 756, 769
BstX2I RGATCY 1 cut(s) 953
BstYI RGATCY 1 cut(s) 953
BstZ17I GTATAC 1 cut(s) 816
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 7 cut(s) 18, 516, 526, 564, 737, 756, 833
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 4 cut(s) 182, 188, 266, 767
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 908
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 1046
CspAI ACCGGT 1 cut(s) 908
CspCI CAANNNNNGTGG 2 cut(s) 158, 193
CviAII CATG 5 cut(s) 73, 259, 401, 766, 944
CviQI GTAC 1 cut(s) 1046
DdeI CTNAG 1 cut(s) 248
DpnI GATC 3 cut(s) 423, 955, 1014
DpnII GATC 3 cut(s) 421, 953, 1012
DraIII CACNNNGTG 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 137, 695, 1031
EarI CTCTTC 3 cut(s) 137, 695, 1031
EciI GGCGGA 2 cut(s) 19, 96
Eco130I CCWWGG 1 cut(s) 296
Eco57I CTGAAG 3 cut(s) 118, 942, 1012
Eco72I CACGTG 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 1035
EcoRII CCWGG 3 cut(s) 242, 854, 1073
EcoT14I CCWWGG 1 cut(s) 296
EcoT22I ATGCAT 2 cut(s) 684, 945
ErhI CCWWGG 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 5 cut(s) 76, 262, 404, 769, 947
FalI AAGNNNNNCTT 2 cut(s) 331, 363
FaqI GGGAC 1 cut(s) 769
FatI CATG 5 cut(s) 72, 258, 400, 765, 943
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 1 cut(s) 815
Fnu4HI GCNGC 8 cut(s) 42, 51, 54, 117, 393, 483, 770, 783
FokI GGATG 7 cut(s) 5, 523, 533, 571, 744, 763, 820
Fsp4HI GCNGC 8 cut(s) 42, 51, 54, 117, 393, 483, 770, 783
GlaI GCGC 1 cut(s) 185
GluI GCNGC 8 cut(s) 42, 51, 54, 117, 393, 483, 770, 783
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 909
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 5 cut(s) 76, 262, 404, 769, 947
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 4 cut(s) 26, 84, 195, 991
HpaII CCGG 1 cut(s) 909
HphI GGTGA 2 cut(s) 844, 940
Hpy166II GTNNAC 4 cut(s) 6, 669, 816, 914
Hpy188I TCNGA 9 cut(s) 70, 194, 321, 433, 632, 777, 921, 975, 1031
Hpy188III TCNNGA 5 cut(s) 452, 477, 544, 842, 960
Hpy8I GTNNAC 4 cut(s) 6, 669, 816, 914
Hpy99I CGWCG 2 cut(s) 203, 230
HpyAV CCTTC 2 cut(s) 224, 800
HpyCH4III ACNGT 2 cut(s) 316, 869
HpyCH4IV ACGT 2 cut(s) 377, 1056
HpyCH4V TGCA 5 cut(s) 647, 682, 785, 914, 943
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 2 cut(s) 377, 1056
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 5 cut(s) 76, 262, 404, 769, 947
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 421, 953, 1012
LmnI GCTCC 1 cut(s) 273
Lsp1109I GCAGC 5 cut(s) 65, 379, 494, 756, 769
LweI GCATC 4 cut(s) 559, 842, 930, 1060
MaeII ACGT 2 cut(s) 377, 1056
MaeIII GTNAC 2 cut(s) 608, 850
MalI GATC 3 cut(s) 423, 955, 1014
MbiI CCGCTC 1 cut(s) 427
MboI GATC 3 cut(s) 421, 953, 1012
MboII GAAGA 8 cut(s) 124, 709, 712, 884, 948, 949, 1018, 1044
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 2 cut(s) 916, 1007
MluCI AATT 2 cut(s) 963, 1035
MlyI GAGTC 3 cut(s) 20, 189, 1000
MmeI TCCRAC 1 cut(s) 93
Mph1103I ATGCAT 2 cut(s) 684, 945
MseI TTAA 1 cut(s) 1059
MspI CCGG 1 cut(s) 909
MspR9I CCNGG 3 cut(s) 244, 856, 1075
Mva1269I GAATGC 2 cut(s) 684, 785
MvaI CCWGG 3 cut(s) 244, 856, 1075
MvnI CGCG 2 cut(s) 24, 184
NdeII GATC 3 cut(s) 421, 953, 1012
NlaIII CATG 5 cut(s) 76, 262, 404, 769, 947
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 2 cut(s) 608, 850
NsiI ATGCAT 2 cut(s) 684, 945
NspI RCATGY 1 cut(s) 769
PaeI GCATGC 1 cut(s) 769
PctI GAATGC 2 cut(s) 684, 785
PfeI GAWTC 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 908
PkrI GCNGC 8 cut(s) 43, 52, 55, 118, 394, 484, 771, 784
PleI GAGTC 3 cut(s) 20, 189, 999
PmaCI CACGTG 1 cut(s) 378
PmlI CACGTG 1 cut(s) 378
PpsI GAGTC 3 cut(s) 20, 189, 999
Ppu21I YACGTR 1 cut(s) 378
Psp1406I AACGTT 1 cut(s) 1056
Psp6I CCWGG 3 cut(s) 242, 854, 1073
PspCI CACGTG 1 cut(s) 378
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 3 cut(s) 242, 854, 1073
PspN4I GGNNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 953
RsaI GTAC 1 cut(s) 1047
RsaNI GTAC 1 cut(s) 1046
SaqAI TTAA 1 cut(s) 1059
SatI GCNGC 8 cut(s) 42, 51, 54, 117, 393, 483, 770, 783
Sau3AI GATC 3 cut(s) 421, 953, 1012
SchI GAGTC 3 cut(s) 20, 189, 1000
ScrFI CCNGG 3 cut(s) 244, 856, 1075
SduI GDGCHC 2 cut(s) 916, 1007
SfaNI GCATC 4 cut(s) 559, 842, 930, 1060
SgrAI CRCCGGYG 1 cut(s) 908
SphI GCATGC 1 cut(s) 769
Sse9I AATT 2 cut(s) 963, 1035
StyD4I CCNGG 3 cut(s) 242, 854, 1073
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 2 cut(s) 316, 869
TaiI ACGT 2 cut(s) 380, 1059
TaqI TCGA 1 cut(s) 1068
TasI AATT 2 cut(s) 963, 1035
TatI WGTACW 1 cut(s) 1045
TauI GCSGC 3 cut(s) 44, 53, 119
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 1059
Tru9I TTAA 1 cut(s) 1059
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 608, 850
TseI GCWGC 5 cut(s) 53, 392, 482, 769, 782
Tsp45I GTSAC 2 cut(s) 608, 850
TspDTI ATGAA 3 cut(s) 89, 389, 782
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 302
VneI GTGCAC 1 cut(s) 912
XapI RAATTY 1 cut(s) 1035
XceI RCATGY 1 cut(s) 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 681
XmiI GTMKAC 1 cut(s) 815
Zsp2I ATGCAT 2 cut(s) 684, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.