Rroxscaffold_4G00282450

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013718
Physical Location & Seq
Reverse (-)
4505538 .. 4508080
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282450.1

Sequence Viewer

Length: 1158 bp
ATGTCTACAACCATCTCCATCCGCGACTCCGCCCCCACAGCCGCTATGGACGCAGCCATATCCTCCTCCGACATGAATGGCGGATTCTACTCCCCAGCCAAAGCCAAAGCCGCCACCAGACCCCTCTTCAGCCCACGCTTCCCGCCATTTCGGCGTCTCCGCCACCTTTTTGCGCGTGCAAGCTCAGACTCGTCGCCTCTGTTTTCCTTCTCTGCTTCGTCGTTTTCCTCTCCTCCAGGCTCAGCTCTCTCATGGGCTGGCTCCCTCCCCAACCCAACTCCTCATTTCCAAGGTACAATCAAAACTCAAACCTCATTTTATTTATACTACAATTTCGGTTTTGATAAATCAAAACTCTTCAGGGGTGGTGGATACACGGTGCTTATGAACACATGGAAGCAGAGCTCTGCTTTGAAGCAATCGGTTGCTCACTATGCCACGTGTGATGGGGTTGCTGCTATTCATGTGGTGTGGTCTGATAGTGATCCACCCTCGGAAATTTTGAAGTTTCGTCTTGAAAAGATGGTGTTTTCAAAGTCAAGAGCAGCTCAAAAACCTGACTTTAGGTTTGGGATGAGGCAGGATGAGGATTTGAACAATAGGTTCAAGACGATTGAGGGGATGACAACTGATGCTGTGTTTTCGGTTGATGATGATGTGATTGTTTCGTGTGACACATTGGATTTTGCTTTCGGAGTTTGGCAGTCTGCGCCGAATGGTATGGTTGGGTTCACTCCGAGAATGCATTGTATTGATGAGGAGAAGAGTGGCGTGGCGACTTATGAGTATGGGGGATGGTGGTCAGTTTGGTGGATGGGGACATATAGCATGCTGCTTCCGAAAGCTGCATTCTTTCATAGGAAATACTTGGATTTGTATACTTACGATTTGCCCTCATCCATTCGTGATTATGTCACCAGGGAGAGGAACTGTGAAGATATTGCTATGTCATTGCTTGTTGCTAATGCCACCAGTGAACCTCCGATTTGGGTGAAAGGGAAGATGTACGAGCTTGGATCTTCAGGAATTAGCGGTCTGAAAAGGCACAGCAAGAGTCGCAACAAGTGCCTCAATGATCTCATCTCCCTCTTCGGAAGAATTCCCCTTGTACAAACTAACGTTAAAGCTGTCGATGCCAGATTTGAATGGTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

385

Amino Acids

43.17

Weight (kDa)

9.03

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 125 - 376 3.5e-67 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 878
AccII CGCG 2 cut(s) 24, 175
AciI CCGC 8 cut(s) 22, 30, 42, 81, 111, 143, 160, 1032
AclI AACGTT 1 cut(s) 1119
AclWI GGATC 2 cut(s) 479, 1024
AcsI RAATTY 2 cut(s) 498, 1098
AcuI CTGAAG 3 cut(s) 112, 343, 1005
AcvI CACGTG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 154
AfaI GTAC 3 cut(s) 295, 1007, 1110
AfiI CCNNNNNNNGG 1 cut(s) 924
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 7 cut(s) 415, 505, 518, 534, 595, 607, 1145
AjnI CCWGG 2 cut(s) 235, 917
AluBI AGCT 7 cut(s) 183, 245, 405, 548, 845, 1012, 1127
AluI AGCT 7 cut(s) 183, 245, 405, 548, 845, 1012, 1127
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 479, 1024
ApeKI GCWGC 5 cut(s) 53, 455, 545, 832, 845
ApoI RAATTY 2 cut(s) 498, 1098
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AspLEI GCGC 2 cut(s) 175, 712
AsuHPI GGTGA 2 cut(s) 907, 1003
BanII GRGCYC 1 cut(s) 407
BbrPI CACGTG 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 5 cut(s) 65, 442, 557, 819, 832
BccI CCATC 6 cut(s) 20, 26, 440, 517, 789, 808
BciT130I CCWGG 2 cut(s) 237, 919
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 161
BfuI GTATCC 1 cut(s) 365
BglI GCCNNNNNGGC 1 cut(s) 151
BisI GCNGC 7 cut(s) 42, 54, 111, 456, 546, 833, 846
BlpI GCTNAGC 1 cut(s) 241
BlsI GCNGC 7 cut(s) 43, 55, 112, 457, 547, 834, 847
Bme1390I CCNGG 2 cut(s) 237, 919
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 2 cut(s) 237, 919
BmsI GCATC 2 cut(s) 622, 1123
BpmI CTGGAG 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 289, 492, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse1I ACTGG 1 cut(s) 972
Bse3DI GCAATG 1 cut(s) 950
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 237, 919
BseDI CCNNGG 3 cut(s) 289, 492, 918
BseGI GGATG 7 cut(s) 18, 579, 589, 627, 800, 819, 896
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMI GCAATG 1 cut(s) 950
BseMII CTCAG 2 cut(s) 198, 255
BseNI ACTGG 1 cut(s) 972
BseRI GAGGAG 4 cut(s) 55, 222, 270, 773
BseXI GCAGC 5 cut(s) 65, 442, 557, 819, 832
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 24, 175
BsiHKAI GWGCWC 1 cut(s) 407
BslFI GGGAC 1 cut(s) 832
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 832
BsmI GAATGC 2 cut(s) 747, 848
Bsp1286I GDGCHC 1 cut(s) 407
Bsp1407I TGTACA 1 cut(s) 1108
Bsp143I GATC 3 cut(s) 484, 1016, 1075
Bsp1720I GCTNAGC 1 cut(s) 241
BspACI CCGC 8 cut(s) 22, 30, 42, 81, 111, 143, 160, 1032
BspCNI CTCAG 2 cut(s) 197, 254
BspFNI CGCG 2 cut(s) 24, 175
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 2 cut(s) 479, 1024
BsrDI GCAATG 1 cut(s) 950
BsrGI TGTACA 1 cut(s) 1108
BsrI ACTGG 1 cut(s) 972
BssECI CCNNGG 3 cut(s) 289, 492, 918
BssMI GATC 3 cut(s) 484, 1016, 1075
BssNAI GTATAC 1 cut(s) 879
BssNI GRCGYC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 289
Bst1107I GTATAC 1 cut(s) 879
Bst2UI CCWGG 2 cut(s) 237, 919
Bst4CI ACNGT 2 cut(s) 379, 932
Bst6I CTCTTC 4 cut(s) 131, 362, 758, 1094
BstACI GRCGYC 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 1065
BstAUI TGTACA 1 cut(s) 1108
BstBAI YACGTR 1 cut(s) 441
BstC8I GCNNGC 4 cut(s) 177, 181, 259, 830
BstDEI CTNAG 2 cut(s) 184, 241
BstF5I GGATG 7 cut(s) 18, 579, 589, 627, 800, 819, 896
BstFNI CGCG 2 cut(s) 24, 175
BstHHI GCGC 2 cut(s) 175, 712
BstKTI GATC 3 cut(s) 487, 1019, 1078
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 484, 1016, 1075
BstMWI GCNNNNNNNGC 9 cut(s) 38, 50, 110, 151, 434, 709, 1056, 1065, 1133
BstNI CCWGG 2 cut(s) 237, 919
BstNSI RCATGY 1 cut(s) 832
BstSCI CCNGG 2 cut(s) 235, 917
BstUI CGCG 2 cut(s) 24, 175
BstV1I GCAGC 5 cut(s) 65, 442, 557, 819, 832
BstX2I RGATCY 1 cut(s) 1016
BstYI RGATCY 1 cut(s) 1016
BstZ17I GTATAC 1 cut(s) 879
BsuI GTATCC 1 cut(s) 365
BtsCI GGATG 7 cut(s) 18, 579, 589, 627, 800, 819, 896
BtsIMutI CAGTG 1 cut(s) 979
Cac8I GCNNGC 4 cut(s) 177, 181, 259, 830
CfoI GCGC 2 cut(s) 175, 712
CseI GACGC 2 cut(s) 59, 143
Csp6I GTAC 3 cut(s) 294, 1006, 1109
CviAII CATG 5 cut(s) 73, 252, 393, 464, 829
CviQI GTAC 3 cut(s) 294, 1006, 1109
DdeI CTNAG 2 cut(s) 184, 241
DpnI GATC 3 cut(s) 486, 1018, 1077
DpnII GATC 3 cut(s) 484, 1016, 1075
Eam1104I CTCTTC 4 cut(s) 131, 362, 758, 1094
EarI CTCTTC 4 cut(s) 131, 362, 758, 1094
EciI GGCGGA 3 cut(s) 19, 96, 149
Ecl136II GAGCTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 407
Eco53kI GAGCTC 1 cut(s) 405
Eco57I CTGAAG 3 cut(s) 112, 343, 1005
Eco72I CACGTG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 1098
EcoRII CCWGG 2 cut(s) 235, 917
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 747
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 5 cut(s) 76, 255, 396, 467, 832
FaqI GGGAC 1 cut(s) 832
FatI CATG 5 cut(s) 72, 251, 392, 463, 828
FauI CCCGC 1 cut(s) 150
FblI GTMKAC 2 cut(s) 5, 878
Fnu4HI GCNGC 7 cut(s) 42, 54, 111, 456, 546, 833, 846
FokI GGATG 7 cut(s) 5, 586, 596, 634, 807, 826, 883
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 7 cut(s) 42, 54, 111, 456, 546, 833, 846
GlaI GCGC 2 cut(s) 174, 711
GluI GCNGC 7 cut(s) 42, 54, 111, 456, 546, 833, 846
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 219
HgaI GACGC 2 cut(s) 59, 143
HhaI GCGC 2 cut(s) 175, 712
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 5 cut(s) 76, 255, 396, 467, 832
Hin6I GCGC 2 cut(s) 173, 710
HinP1I GCGC 2 cut(s) 173, 710
HinfI GANTC 4 cut(s) 26, 84, 188, 1054
HphI GGTGA 2 cut(s) 907, 1003
Hpy166II GTNNAC 4 cut(s) 6, 732, 879, 977
Hpy188III TCNNGA 5 cut(s) 515, 540, 607, 905, 1023
Hpy8I GTNNAC 4 cut(s) 6, 732, 879, 977
Hpy99I CGWCG 2 cut(s) 196, 223
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 379, 932
HpyCH4IV ACGT 2 cut(s) 440, 1119
HpyCH4V TGCA 3 cut(s) 179, 745, 848
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 50, 110, 151, 434, 709, 1056, 1065, 1133
HpyF3I CTNAG 2 cut(s) 184, 241
HpySE526I ACGT 2 cut(s) 440, 1119
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 5 cut(s) 76, 255, 396, 467, 832
HspAI GCGC 2 cut(s) 173, 710
Kzo9I GATC 3 cut(s) 484, 1016, 1075
LmnI GCTCC 1 cut(s) 266
Lsp1109I GCAGC 5 cut(s) 65, 442, 557, 819, 832
LweI GCATC 2 cut(s) 622, 1123
MaeII ACGT 2 cut(s) 440, 1119
MaeIII GTNAC 2 cut(s) 671, 913
MalI GATC 3 cut(s) 486, 1018, 1077
MboI GATC 3 cut(s) 484, 1016, 1075
MboII GAAGA 8 cut(s) 118, 349, 775, 947, 1011, 1012, 1081, 1107
MflI RGATCY 1 cut(s) 1016
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 4 cut(s) 331, 498, 1026, 1098
MlyI GAGTC 3 cut(s) 20, 182, 1063
MmeI TCCRAC 1 cut(s) 93
Mph1103I ATGCAT 1 cut(s) 747
MseI TTAA 1 cut(s) 1122
MspR9I CCNGG 2 cut(s) 237, 919
Mva1269I GAATGC 2 cut(s) 747, 848
MvaI CCWGG 2 cut(s) 237, 919
MvnI CGCG 2 cut(s) 24, 175
MwoI GCNNNNNNNGC 9 cut(s) 38, 50, 110, 151, 434, 709, 1056, 1065, 1133
NdeII GATC 3 cut(s) 484, 1016, 1075
NlaIII CATG 5 cut(s) 76, 255, 396, 467, 832
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 671, 913
NsiI ATGCAT 1 cut(s) 747
NspI RCATGY 1 cut(s) 832
PaeI GCATGC 1 cut(s) 832
PctI GAATGC 2 cut(s) 747, 848
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 7 cut(s) 43, 55, 112, 457, 547, 834, 847
PleI GAGTC 3 cut(s) 20, 182, 1062
PmaCI CACGTG 1 cut(s) 441
PmlI CACGTG 1 cut(s) 441
PpsI GAGTC 3 cut(s) 20, 182, 1062
Ppu21I YACGTR 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 1119
Psp6I CCWGG 2 cut(s) 235, 917
PspCI CACGTG 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 2 cut(s) 235, 917
PspN4I GGNNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 1016
RsaI GTAC 3 cut(s) 295, 1007, 1110
RsaNI GTAC 3 cut(s) 294, 1006, 1109
SacI GAGCTC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 1122
SatI GCNGC 7 cut(s) 42, 54, 111, 456, 546, 833, 846
Sau3AI GATC 3 cut(s) 484, 1016, 1075
SchI GAGTC 3 cut(s) 20, 182, 1063
ScrFI CCNGG 2 cut(s) 237, 919
SduI GDGCHC 1 cut(s) 407
SfaNI GCATC 2 cut(s) 622, 1123
SphI GCATGC 1 cut(s) 832
Sse9I AATT 4 cut(s) 331, 498, 1026, 1098
SsiI CCGC 8 cut(s) 22, 30, 42, 81, 111, 143, 160, 1032
SstI GAGCTC 1 cut(s) 407
StyD4I CCNGG 2 cut(s) 235, 917
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 379, 932
TaiI ACGT 2 cut(s) 443, 1122
TaqI TCGA 1 cut(s) 1131
TasI AATT 4 cut(s) 331, 498, 1026, 1098
TatI WGTACW 1 cut(s) 1108
TauI GCSGC 2 cut(s) 44, 113
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 1122
Tru9I TTAA 1 cut(s) 1122
TscAI CASTG 1 cut(s) 979
TseFI GTSAC 2 cut(s) 671, 913
TseI GCWGC 5 cut(s) 53, 455, 545, 832, 845
Tsp45I GTSAC 2 cut(s) 671, 913
TspDTI ATGAA 4 cut(s) 89, 401, 452, 845
TspRI CASTG 1 cut(s) 979
XapI RAATTY 2 cut(s) 498, 1098
XceI RCATGY 1 cut(s) 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 2 cut(s) 5, 878
Zsp2I ATGCAT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.