RchiOBHm_Chr1g0375981

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013718
Physical Location & Seq
Forward (+)
63257764 .. 63260558
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59966

Sequence Viewer

Length: 1089 bp
ATGTCCACAACCATCTCCATCCGCGACTCCGCCCCCACCGCCGCTATGGCCGCAGCCATATCCTCCTCCGACATGAATGGCGGATTCTACTCCCCAGCCAAAGCCAAAGCCGCCTCCAGACCCCTCTTCAGCCCACGCTTCCCGCCATTTCGGCGTCTCCGCCACCTCTTTTGCCCGCGCAAGCTCAGACTCGTCGCCTCTGTTTTCCTTCTCTGCTTCGTCGTTTTCCTCTCCTCCAGGCTCAGCTCTCTCATGGGCTGGCTCCCTCCCCAACCCAACTCCTCATTTCCAAGGGGTGGTGGATTCACTGTTCTGATAAACACATGGAAGCAAAGCTCTGCTTTGAAACAATCGGTTGCTCACTATGCCACGTGTGATGGGGTTGCTGCTATTCATGTGGTGTGGTCTGATAGTGATCCACACTCAGAAACAATGAAGGCTCGTCTTGAAAAGATGGTGTTTTCAAAATCAAGAGCGGCTCAAAAACTTGACTTTAGGTTTGGGATGAGGCAGGATGAGGATTTGAACAATAGGTTTAAGCCGATTGAGGGGATGAAAACTGATGCTGTGTTTTCGGTTGATGATGATGTGATTGTCTCGTGTGACACATTGGATTTTGCTTTCGGAGTTTGGCAGTCTGCGCCGAATGGTATGGTTGGGTTCACTCCGAGAATGCATTGGATTGATGAGGAGAAGAGTGGCGTGGCGAATTATGAGTATGAGGGATGGTGGTCAGTTTGGTGGATGGGGACATACAGCATGCTGCTTCCGAAAGCTGCATTCTTTCATAGGAAATACTTGGATTTGTATACTTACGATATGACCGCATCCATTCGTGATTATGTCACCAGGGAAAGAAACTGTGAAGATATTGCTATGTCATTGCTTGTTGCTAATGCCACCGGTGCACCTCCGATTTGGGTGAAAGGGAAGATGTACGAGCTTGGATCTTCAGGAATTAGCGGTCTGAAAAGGCACAGCAAGAGTGGCAACAAGTGCCTCAATGATCTCATCTCCCTCTTCGGAAGAATTCCCCTTGTACAAACTAACGTTAAAGCTGTCGATGCCAGGTTTGAATGGTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

362

Amino Acids

40.75

Weight (kDa)

9.3

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 102 - 353 2.2e-67 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 296
AccBSI CCGCTC 1 cut(s) 476
AccI GTMKAC 1 cut(s) 809
AccII CGCG 2 cut(s) 24, 178
AclI AACGTT 1 cut(s) 1050
AclWI GGATC 2 cut(s) 410, 955
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 1029
AcuI CTGAAG 2 cut(s) 112, 936
AcvI CACGTG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 154
AfaI GTAC 2 cut(s) 938, 1041
AfiI CCNNNNNNNGG 2 cut(s) 296, 548
AflIII ACRYGT 1 cut(s) 371
AgeI ACCGGT 1 cut(s) 902
AgsI TTSAA 5 cut(s) 346, 449, 465, 526, 1076
AjnI CCWGG 3 cut(s) 236, 848, 1067
AloI GAACNNNNNNTCC 2 cut(s) 294, 326
AluBI AGCT 6 cut(s) 184, 246, 336, 776, 943, 1058
AluI AGCT 6 cut(s) 184, 246, 336, 776, 943, 1058
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 2 cut(s) 161, 601
Alw44I GTGCAC 1 cut(s) 906
AlwI GGATC 2 cut(s) 410, 955
AoxI GGCC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 906
ApeKI GCWGC 4 cut(s) 53, 386, 763, 776
ApoI RAATTY 1 cut(s) 1029
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AsiGI ACCGGT 1 cut(s) 902
AspLEI GCGC 2 cut(s) 180, 643
AsuHPI GGTGA 2 cut(s) 838, 934
BaeGI GKGCMC 1 cut(s) 910
BauI CACGAG 1 cut(s) 598
BbrPI CACGTG 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 4 cut(s) 65, 373, 750, 763
BccI CCATC 6 cut(s) 20, 26, 371, 448, 720, 739
BciT130I CCWGG 3 cut(s) 238, 850, 1069
BcoDI GTCTC 2 cut(s) 161, 601
BglI GCCNNNNNGGC 2 cut(s) 47, 151
BisI GCNGC 8 cut(s) 42, 51, 54, 111, 387, 477, 764, 777
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 8 cut(s) 43, 52, 55, 112, 388, 478, 765, 778
Bme1390I CCNGG 3 cut(s) 238, 850, 1069
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 3 cut(s) 238, 850, 1069
BmsI GCATC 3 cut(s) 553, 836, 1054
BpmI CTGGAG 2 cut(s) 100, 220
Bpu1102I GCTNAGC 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 290, 849
BsaWI WCCGGW 1 cut(s) 902
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 548
Bse118I RCCGGY 1 cut(s) 902
Bse3DI GCAATG 1 cut(s) 881
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 3 cut(s) 238, 850, 1069
BseDI CCNNGG 2 cut(s) 290, 849
BseGI GGATG 7 cut(s) 18, 510, 520, 558, 731, 750, 827
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 296, 548
BseMI GCAATG 1 cut(s) 881
BseMII CTCAG 3 cut(s) 199, 256, 438
BseRI GAGGAG 4 cut(s) 55, 223, 271, 704
BseSI GKGCMC 1 cut(s) 910
BseXI GCAGC 4 cut(s) 65, 373, 750, 763
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 24, 178
BshFI GGCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 902
BsiHKAI GWGCWC 1 cut(s) 910
BsiSI CCGG 1 cut(s) 903
BslFI GGGAC 1 cut(s) 763
BslI CCNNNNNNNGG 2 cut(s) 296, 548
BsmAI GTCTC 2 cut(s) 161, 601
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 763
BsmI GAATGC 2 cut(s) 678, 779
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 910
Bsp1407I TGTACA 1 cut(s) 1039
Bsp143I GATC 3 cut(s) 415, 947, 1006
Bsp1720I GCTNAGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 3 cut(s) 198, 255, 437
BspFNI CGCG 2 cut(s) 24, 178
BspLI GGNNCC 1 cut(s) 263
BspPI GGATC 2 cut(s) 410, 955
BsrBI CCGCTC 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 881
BsrFI RCCGGY 1 cut(s) 902
BsrGI TGTACA 1 cut(s) 1039
BssAI RCCGGY 1 cut(s) 902
BssECI CCNNGG 2 cut(s) 290, 849
BssMI GATC 3 cut(s) 415, 947, 1006
BssNAI GTATAC 1 cut(s) 810
BssNI GRCGYC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 598
BssT1I CCWWGG 1 cut(s) 290
Bst1107I GTATAC 1 cut(s) 810
Bst2BI CACGAG 1 cut(s) 598
Bst2UI CCWGG 3 cut(s) 238, 850, 1069
Bst4CI ACNGT 2 cut(s) 310, 863
Bst6I CTCTTC 3 cut(s) 131, 689, 1025
BstACI GRCGYC 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 996
BstAUI TGTACA 1 cut(s) 1039
BstBAI YACGTR 1 cut(s) 372
BstC8I GCNNGC 4 cut(s) 176, 182, 260, 761
BstDEI CTNAG 3 cut(s) 185, 242, 424
BstF5I GGATG 7 cut(s) 18, 510, 520, 558, 731, 750, 827
BstFNI CGCG 2 cut(s) 24, 178
BstHHI GCGC 2 cut(s) 180, 643
BstKTI GATC 3 cut(s) 418, 950, 1009
BstMAI GTCTC 2 cut(s) 161, 601
BstMBI GATC 3 cut(s) 415, 947, 1006
BstNI CCWGG 3 cut(s) 238, 850, 1069
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 3 cut(s) 236, 848, 1067
BstSLI GKGCMC 1 cut(s) 910
BstUI CGCG 2 cut(s) 24, 178
BstV1I GCAGC 4 cut(s) 65, 373, 750, 763
BstX2I RGATCY 1 cut(s) 947
BstYI RGATCY 1 cut(s) 947
BstZ17I GTATAC 1 cut(s) 810
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 7 cut(s) 18, 510, 520, 558, 731, 750, 827
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 4 cut(s) 176, 182, 260, 761
CfoI GCGC 2 cut(s) 180, 643
Cfr10I RCCGGY 1 cut(s) 902
CseI GACGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 937, 1040
CspAI ACCGGT 1 cut(s) 902
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 5 cut(s) 73, 253, 324, 395, 760
CviQI GTAC 2 cut(s) 937, 1040
DdeI CTNAG 3 cut(s) 185, 242, 424
DpnI GATC 3 cut(s) 417, 949, 1008
DpnII GATC 3 cut(s) 415, 947, 1006
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 131, 689, 1025
EarI CTCTTC 3 cut(s) 131, 689, 1025
EciI GGCGGA 3 cut(s) 19, 96, 149
Eco130I CCWWGG 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 112, 936
Eco72I CACGTG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 1029
EcoRII CCWGG 3 cut(s) 236, 848, 1067
EcoT14I CCWWGG 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 678
ErhI CCWWGG 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 5 cut(s) 76, 256, 327, 398, 763
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FaqI GGGAC 1 cut(s) 763
FatI CATG 5 cut(s) 72, 252, 323, 394, 759
FauI CCCGC 2 cut(s) 150, 183
FblI GTMKAC 1 cut(s) 809
Fnu4HI GCNGC 8 cut(s) 42, 51, 54, 111, 387, 477, 764, 777
FokI GGATG 7 cut(s) 5, 517, 527, 565, 738, 757, 814
Fsp4HI GCNGC 8 cut(s) 42, 51, 54, 111, 387, 477, 764, 777
GlaI GCGC 2 cut(s) 179, 642
GluI GCNGC 8 cut(s) 42, 51, 54, 111, 387, 477, 764, 777
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 2 cut(s) 100, 220
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 903
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 180, 643
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 5 cut(s) 76, 256, 327, 398, 763
Hin6I GCGC 2 cut(s) 178, 641
HinP1I GCGC 2 cut(s) 178, 641
HinfI GANTC 4 cut(s) 26, 84, 189, 303
HpaII CCGG 1 cut(s) 903
HphI GGTGA 2 cut(s) 838, 934
Hpy166II GTNNAC 4 cut(s) 6, 663, 810, 908
Hpy188III TCNNGA 5 cut(s) 117, 446, 471, 836, 954
Hpy8I GTNNAC 4 cut(s) 6, 663, 810, 908
Hpy99I CGWCG 2 cut(s) 197, 224
HpyAV CCTTC 2 cut(s) 218, 430
HpyCH4III ACNGT 2 cut(s) 310, 863
HpyCH4IV ACGT 2 cut(s) 371, 1050
HpyCH4V TGCA 3 cut(s) 676, 779, 908
HpyF3I CTNAG 3 cut(s) 185, 242, 424
HpySE526I ACGT 2 cut(s) 371, 1050
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 5 cut(s) 76, 256, 327, 398, 763
HspAI GCGC 2 cut(s) 178, 641
Kzo9I GATC 3 cut(s) 415, 947, 1006
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 4 cut(s) 65, 373, 750, 763
LweI GCATC 3 cut(s) 553, 836, 1054
MaeII ACGT 2 cut(s) 371, 1050
MaeIII GTNAC 2 cut(s) 602, 844
MalI GATC 3 cut(s) 417, 949, 1008
MbiI CCGCTC 1 cut(s) 476
MboI GATC 3 cut(s) 415, 947, 1006
MboII GAAGA 7 cut(s) 118, 706, 878, 942, 943, 1012, 1038
MflI RGATCY 1 cut(s) 947
MhlI GDGCHC 1 cut(s) 910
MluCI AATT 3 cut(s) 709, 957, 1029
MlyI GAGTC 2 cut(s) 20, 183
MmeI TCCRAC 1 cut(s) 93
Mph1103I ATGCAT 1 cut(s) 678
MseI TTAA 2 cut(s) 537, 1053
MspI CCGG 1 cut(s) 903
MspR9I CCNGG 3 cut(s) 238, 850, 1069
Mva1269I GAATGC 2 cut(s) 678, 779
MvaI CCWGG 3 cut(s) 238, 850, 1069
MvnI CGCG 2 cut(s) 24, 178
NdeII GATC 3 cut(s) 415, 947, 1006
NlaIII CATG 5 cut(s) 76, 256, 327, 398, 763
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 602, 844
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 1 cut(s) 763
PaeI GCATGC 1 cut(s) 763
PctI GAATGC 2 cut(s) 678, 779
PfeI GAWTC 2 cut(s) 84, 303
PflMI CCANNNNNTGG 1 cut(s) 296
PinAI ACCGGT 1 cut(s) 902
PkrI GCNGC 8 cut(s) 43, 52, 55, 112, 388, 478, 765, 778
PleI GAGTC 2 cut(s) 20, 183
PmaCI CACGTG 1 cut(s) 372
PmlI CACGTG 1 cut(s) 372
PpsI GAGTC 2 cut(s) 20, 183
Ppu21I YACGTR 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 1050
Psp6I CCWGG 3 cut(s) 236, 848, 1067
PspCI CACGTG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 3 cut(s) 236, 848, 1067
PspN4I GGNNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 947
RsaI GTAC 2 cut(s) 938, 1041
RsaNI GTAC 2 cut(s) 937, 1040
SaqAI TTAA 2 cut(s) 537, 1053
SatI GCNGC 8 cut(s) 42, 51, 54, 111, 387, 477, 764, 777
Sau3AI GATC 3 cut(s) 415, 947, 1006
SchI GAGTC 2 cut(s) 20, 183
ScrFI CCNGG 3 cut(s) 238, 850, 1069
SduI GDGCHC 1 cut(s) 910
SfaNI GCATC 3 cut(s) 553, 836, 1054
SgrAI CRCCGGYG 1 cut(s) 902
SphI GCATGC 1 cut(s) 763
Sse9I AATT 3 cut(s) 709, 957, 1029
StyD4I CCNGG 3 cut(s) 236, 848, 1067
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 310, 863
TaiI ACGT 2 cut(s) 374, 1053
TaqI TCGA 1 cut(s) 1062
TasI AATT 3 cut(s) 709, 957, 1029
TatI WGTACW 1 cut(s) 1039
TauI GCSGC 4 cut(s) 44, 53, 113, 479
TfiI GAWTC 2 cut(s) 84, 303
Tru1I TTAA 2 cut(s) 537, 1053
Tru9I TTAA 2 cut(s) 537, 1053
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 602, 844
TseI GCWGC 4 cut(s) 53, 386, 763, 776
Tsp45I GTSAC 2 cut(s) 602, 844
TspDTI ATGAA 5 cut(s) 89, 383, 449, 569, 776
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 906
XapI RAATTY 1 cut(s) 1029
XceI RCATGY 1 cut(s) 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 809
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.