MD01G1191300.v1.1

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013718
Physical Location & Seq
Forward (+)
28956660 .. 28957867
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1191300.v1.1.491

Sequence Viewer

Length: 297 bp
ATGTATTGCTTGATAAGGATGTTGAACTTTTGCTTTTATAGTATGCTTCTGCCAAAAGCTCCATTCTTTCGTAGGAAATACTTTGATTTGTATACTCACAATATGCCCTCATCGATTCGTGATCATGTCACCATGGAGAGGTACATATCTCTACATGATTCAATTGCTTGTGTGCTGCGTTTTTGTACTTTTGAGTTTCTGTGCTTGTGCGGAAACTGTGAAGATATTGCAATGACATTGCTCGTTCCTAATGCCACCGTTTGCTCCTCCAATTTGAGTGAAAGGGAAGTCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

99

Amino Acids

11.51

Weight (kDa)

6.79

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 11 - 46 7.3e-06 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 92
AciI CCGC 1 cut(s) 210
AfaI GTAC 2 cut(s) 143, 187
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 25, 162
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 121
BbvI GCAGC 1 cut(s) 162
BclI TGATCA 1 cut(s) 121
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse3DI GCAATG 2 cut(s) 236, 237
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 2 cut(s) 236, 237
BseRI GAGGAG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 138
Bsp143I GATC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 1 cut(s) 210
BspDI ATCGAT 1 cut(s) 113
BsrDI GCAATG 2 cut(s) 236, 237
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 121
BssNAI GTATAC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 132
Bst1107I GTATAC 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 218, 259
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 162
BstZ17I GTATAC 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 113
BsuTUI ATCGAT 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 113
Csp6I GTAC 2 cut(s) 142, 186
CviAII CATG 3 cut(s) 125, 133, 155
CviJI RGCY 1 cut(s) 59
CviKI_1 RGCY 1 cut(s) 59
CviQI GTAC 2 cut(s) 142, 186
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 128, 136, 158
FaiI YATR 9 cut(s) 39, 44, 93, 104, 126, 134, 146, 156, 295
FatI CATG 3 cut(s) 124, 132, 154
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 128, 136, 158
HinfI GANTC 2 cut(s) 115, 158
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 93
HpyCH4III ACNGT 2 cut(s) 218, 259
HpyCH4V TGCA 1 cut(s) 230
Hsp92II CATG 3 cut(s) 128, 136, 158
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 2 cut(s) 64, 269
Lsp1109I GCAGC 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 233
MfeI CAATTG 1 cut(s) 162
MluCI AATT 2 cut(s) 162, 271
MnlI CCTC 3 cut(s) 118, 132, 277
MunI CAATTG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 132
NdeII GATC 1 cut(s) 121
NlaIII CATG 3 cut(s) 128, 136, 158
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 115, 158
PkrI GCNGC 1 cut(s) 177
RsaI GTAC 2 cut(s) 143, 187
RsaNI GTAC 2 cut(s) 142, 186
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 121
SetI ASST 2 cut(s) 61, 143
SgeI CNNG 8 cut(s) 22, 131, 137, 145, 167, 180, 217, 254
Sse9I AATT 2 cut(s) 162, 271
SsiI CCGC 1 cut(s) 210
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 218, 259
TaqI TCGA 1 cut(s) 113
TasI AATT 2 cut(s) 162, 271
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 2 cut(s) 115, 158
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.