Rmu_co8445477.1_g000001

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8445477.1
OG0013718
Physical Location & Seq
Forward (+)
1 .. 1567
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8445477.1_g000001.1.cds

Sequence Viewer

Length: 332 bp
tgaagatatacgagcttggatcttcaagaattagcagtctgaaaagacacagcaagagtggcaacaagtgcctcaatgatctcatctccctcttcggaagaattccccttgtacaatctaacgttaaggccgtcgatgccagggcaatgacagaaggttgtggttgttctcttcaagaagacttgctttgggtccgtggaagttgtgacaatatgagtgtcctagtagtttcgttgaacagatccaagagagaaggcaaagctgaaattcaagtattgggaatgcaagcaatacaattgtttggagaggtggcagtggtgatccaaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

109

Amino Acids

11.85

Weight (kDa)

9.07

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 122
AclWI GGATC 3 cut(s) 27, 236, 315
AcsI RAATTY 2 cut(s) 101, 266
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 4 cut(s) 26, 175, 237, 271
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 15, 262
AluI AGCT 2 cut(s) 15, 262
AlwI GGATC 3 cut(s) 27, 236, 315
AoxI GGCC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 101, 266
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 330
AvaII GGWCC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 185
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 141
BfaI CTAG 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 140, 195, 324
Bse3DI GCAATG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 140, 195, 324
BseMI GCAATG 1 cut(s) 152
BshFI GGCC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 4 cut(s) 19, 78, 241, 320
BspANI GGCC 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 3 cut(s) 27, 236, 315
BsrDI GCAATG 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 140, 195, 324
BssMI GATC 4 cut(s) 19, 78, 241, 320
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 141
Bst6I CTCTTC 2 cut(s) 97, 176
BstAPI GCANNNNNTGC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 195
BstKTI GATC 4 cut(s) 22, 81, 244, 323
BstMBI GATC 4 cut(s) 19, 78, 241, 320
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 136
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 2 cut(s) 19, 241
BstYI RGATCY 2 cut(s) 19, 241
BsuRI GGCC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 112
CviJI RGCY 3 cut(s) 15, 130, 262
CviKI_1 RGCY 3 cut(s) 15, 130, 262
CviQI GTAC 1 cut(s) 112
DpnI GATC 4 cut(s) 21, 80, 243, 322
DpnII GATC 4 cut(s) 19, 78, 241, 320
Eam1104I CTCTTC 2 cut(s) 97, 176
EarI CTCTTC 2 cut(s) 97, 176
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaiI YATR 2 cut(s) 9, 214
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FspBI CTAG 1 cut(s) 223
HaeIII GGCC 1 cut(s) 130
HphI GGTGA 1 cut(s) 330
Hpy188I TCNGA 2 cut(s) 41, 97
Hpy188III TCNNGA 2 cut(s) 26, 175
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 148, 247
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 136
HpySE526I ACGT 1 cut(s) 122
Kzo9I GATC 4 cut(s) 19, 78, 241, 320
LpnPI CCDG 2 cut(s) 126, 153
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 223
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 205
MalI GATC 4 cut(s) 21, 80, 243, 322
MboI GATC 4 cut(s) 19, 78, 241, 320
MboII GAAGA 6 cut(s) 14, 15, 84, 110, 163, 190
MfeI CAATTG 1 cut(s) 295
MflI RGATCY 2 cut(s) 19, 241
MluCI AATT 4 cut(s) 29, 101, 266, 295
MnlI CCTC 3 cut(s) 82, 100, 300
MseI TTAA 2 cut(s) 125, 330
MspR9I CCNGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 136
NdeII GATC 4 cut(s) 19, 78, 241, 320
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PctI GAATGC 1 cut(s) 287
Psp1406I AACGTT 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 192
PsuI RGATCY 2 cut(s) 19, 241
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 125, 330
Sau3AI GATC 4 cut(s) 19, 78, 241, 320
Sau96I GGNCC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 141
SetI ASST 6 cut(s) 17, 125, 159, 264, 311, 330
SfaNI GCATC 1 cut(s) 126
SinI GGWCC 1 cut(s) 192
Sse9I AATT 4 cut(s) 29, 101, 266, 295
SspMI CTAG 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 324
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 134
TasI AATT 4 cut(s) 29, 101, 266, 295
TatI WGTACW 1 cut(s) 111
Tru1I TTAA 2 cut(s) 125, 330
Tru9I TTAA 2 cut(s) 125, 330
TscAI CASTG 1 cut(s) 320
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 2 cut(s) 101, 266
XspI CTAG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.