Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024503.1

Orthogroup ID

OG0013718

Physical Location & Seq

Genomic Coordinates Forward (+)

23536 .. 26864

Gene Structure 3329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024503.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

atgccttttgtgaattgtgactcgtactctccttccaattcccaaccgccatctccgggtacgcagtggcgaagtactcaactcccctctcactcttcaccaccctcacatcttcacaatgtcaacctccaacccaaacaccgccaccgtccgatcccccaaaccttaacgcttcccaatgtccacaatcatctccatccgcgacccgtggccgcagccacagcctccgccgacacgaacggtggattctactccccagccaaagccaaaaccgccgccagacccctcttcaccgctcgcttcccgcaatttcggcgtctccgccacctctttcgcacgcgcaagctcagacttgtcgcctctgttttcctcctctgcttcgtcgttttgctctcctccaggctcagctctctcatggggtggctccctccccaccccaacacctcctttcccagctacaatcacatgcaaacctcattttatttatactacaatttcggttttgataaatcaaaaatcttcaggggtggtggatacactgttctgatgaacacatggaagcaaagctctgctttgaagcaatcggttgctcgctatgccacgtgtgatggggttgctgctattcatgtggtgtggtctgatagtgatccaccctcggaaactttgaagtctcgtcttgaaaatatggtgttttcaaagtcaagagcagctcaaaaacctgtctttaggtttgggatgaggcaggatgaggatttgaacaataggttcaagccgattgaggggatgacaactgatgctgtgttttcggttgatgatgatgtgattgtctcctgtgacacattggattttgctttcggagattggcagtctgcgcctgatgctatgaagagtggcatggcgaaagatgagtattggggatggtggtcagtttggtggatggggacatatagcatgctgcttccgaaagctgcattctttcataggaaatacttggatttgtatacttacgctatgccctcatccattcgtgattatgtcaccagggagaggaactgtgaagatattgctatgtcattgcttgttgctaatgccaccggtgaacctctgatttgggtgaaagtgaagatatacgagcttggatcttcaagaattagcagtctgaaaagacacagcaagagtggcaacaagtgcctcaatgatctcatctccctcttcggaagaattccccttgtacaatctaacgttaaggccgtcgatgccagggcaatgacagaaggttgtggttgttctcttcaagaagacttgctttgggtccgtggaagttgtgacaatatgagtgtcctagtagtttcgttgaacagatccaagagagaaggcaaagctgaaattcaagtattgggaatgcaagcaatacaattgtttggagaggtggcagtggtgatccaaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

483

Amino Acids

54.37

Weight (kDa)

9.49

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27500
malus_domestica	MD01G1191300.v1.1
prunus_persica	Prupe.2G285700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375981
rosa_laevigata	RLG00000026638
rosa_multiflora	Rmu_co8445477.1_g000001 Rmu_sc0024503.1_g000003 Rmu_ssc0000116.1_g000010 Rmu_ssc0000116.1_g000011
rosa_roxburghii	Rroxscaffold_4G00282450
rosa_rugosa	Rorug01G0393300 Rorug01G0393400 Rorug02G0306700
rosa_samantha	Rh1AG404700 Rh1BG368200 Rh1CG381100 Rh1DG398100
rosa_wichuraiana	Rw1G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	1001
AccII	CGCG	2 cut(s)	202, 340
AclI	AACGTT	1 cut(s)	1242
AclWI	GGATC	5 cut(s)	148, 641, 1147, 1356, 1435
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	1221, 1386
AcuI	CTGAAG	1 cut(s)	505
AcvI	CACGTG	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	4 cut(s)	26, 61, 76, 1233
AfiI	CCNNNNNNNGG	3 cut(s)	56, 779, 1047
AflIII	ACRYGT	1 cut(s)	602
AgeI	ACCGGT	1 cut(s)	1094
AjnI	CCWGG	3 cut(s)	398, 1040, 1259
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
AluBI	AGCT	8 cut(s)	346, 408, 456, 567, 710, 968, 1135, 1382
AluI	AGCT	8 cut(s)	346, 408, 456, 567, 710, 968, 1135, 1382
Alw26I	GTCTC	3 cut(s)	323, 675, 832
AlwI	GGATC	5 cut(s)	148, 641, 1147, 1356, 1435
AoxI	GGCC	2 cut(s)	210, 1248
ApeKI	GCWGC	5 cut(s)	215, 617, 707, 955, 968
ApoI	RAATTY	2 cut(s)	1221, 1386
AsiGI	ACCGGT	1 cut(s)	1094
AspLEI	GCGC	2 cut(s)	342, 874
AspS9I	GGNCC	1 cut(s)	1312
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	6 cut(s)	90, 283, 1030, 1109, 1126, 1450
AvaII	GGWCC	1 cut(s)	1312
BbrPI	CACGTG	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	1305
BbvI	GCAGC	5 cut(s)	227, 604, 719, 942, 955
BccI	CCATC	5 cut(s)	58, 204, 602, 912, 931
BceAI	ACGGC	1 cut(s)	1235
BciT130I	CCWGG	3 cut(s)	400, 1042, 1261
BciVI	GTATCC	1 cut(s)	527
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	3 cut(s)	323, 675, 832
BfaI	CTAG	1 cut(s)	1343
BfuI	GTATCC	1 cut(s)	527
BisI	GCNGC	7 cut(s)	213, 216, 276, 618, 708, 956, 969
BlpI	GCTNAGC	1 cut(s)	404
BlsI	GCNGC	7 cut(s)	214, 217, 277, 619, 709, 957, 970
BmcAI	AGTACT	1 cut(s)	76
Bme1390I	CCNGG	4 cut(s)	57, 400, 1042, 1261
Bme18I	GGWCC	1 cut(s)	1312
BmgT120I	GGNCC	1 cut(s)	1312
BmiI	GGNNCC	2 cut(s)	425, 1313
BmrFI	CCNGG	4 cut(s)	57, 400, 1042, 1261
BmsI	GCATC	3 cut(s)	784, 868, 1246
BpiI	GAAGAC	1 cut(s)	1305
BpmI	CTGGAG	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	6 cut(s)	207, 654, 1041, 1260, 1315, 1444
BsaWI	WCCGGW	1 cut(s)	1094
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 779, 1047
Bse118I	RCCGGY	1 cut(s)	1094
Bse3DI	GCAATG	2 cut(s)	1073, 1272
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	3 cut(s)	400, 1042, 1261
BseDI	CCNNGG	6 cut(s)	207, 654, 1041, 1260, 1315, 1444
BseGI	GGATG	7 cut(s)	196, 741, 751, 789, 923, 942, 1019
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	56, 779, 1047
BseMI	GCAATG	2 cut(s)	1073, 1272
BseMII	CTCAG	2 cut(s)	361, 418
BseRI	GAGGAG	2 cut(s)	362, 385
BseXI	GCAGC	5 cut(s)	227, 604, 719, 942, 955
BseYI	CCCAGC	2 cut(s)	256, 452
Bsh1236I	CGCG	2 cut(s)	202, 340
BshFI	GGCC	2 cut(s)	212, 1250
BshTI	ACCGGT	1 cut(s)	1094
BsiSI	CCGG	2 cut(s)	56, 1095
BslFI	GGGAC	1 cut(s)	955
BslI	CCNNNNNNNGG	3 cut(s)	56, 779, 1047
BsmAI	GTCTC	3 cut(s)	323, 675, 832
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	955
BsmI	GAATGC	2 cut(s)	971, 1407
BsnI	GGCC	2 cut(s)	212, 1250
Bsp1407I	TGTACA	1 cut(s)	1231
Bsp143I	GATC	6 cut(s)	153, 646, 1139, 1198, 1361, 1440
Bsp1720I	GCTNAGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	212, 1250
BspCNI	CTCAG	2 cut(s)	360, 417
BspFNI	CGCG	2 cut(s)	202, 340
BspLI	GGNNCC	2 cut(s)	425, 1313
BspPI	GGATC	5 cut(s)	148, 641, 1147, 1356, 1435
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	2 cut(s)	1073, 1272
BsrFI	RCCGGY	1 cut(s)	1094
BsrGI	TGTACA	1 cut(s)	1231
BssAI	RCCGGY	1 cut(s)	1094
BssECI	CCNNGG	6 cut(s)	207, 654, 1041, 1260, 1315, 1444
BssMI	GATC	6 cut(s)	153, 646, 1139, 1198, 1361, 1440
BssNAI	GTATAC	1 cut(s)	1002
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	1444
Bst1107I	GTATAC	1 cut(s)	1002
Bst2UI	CCWGG	3 cut(s)	400, 1042, 1261
Bst4CI	ACNGT	4 cut(s)	149, 242, 541, 1055
Bst6I	CTCTTC	5 cut(s)	100, 293, 881, 1217, 1296
BstACI	GRCGYC	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	1188
BstAUI	TGTACA	1 cut(s)	1231
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	6 cut(s)	298, 338, 344, 592, 953, 1407
BstDEI	CTNAG	2 cut(s)	347, 404
BstDSI	CCRYGG	2 cut(s)	207, 1315
BstF5I	GGATG	7 cut(s)	196, 741, 751, 789, 923, 942, 1019
BstFNI	CGCG	2 cut(s)	202, 340
BstHHI	GCGC	2 cut(s)	342, 874
BstKTI	GATC	6 cut(s)	156, 649, 1142, 1201, 1364, 1443
BstMAI	GTCTC	3 cut(s)	323, 675, 832
BstMBI	GATC	6 cut(s)	153, 646, 1139, 1198, 1361, 1440
BstMWI	GCNNNNNNNGC	9 cut(s)	221, 272, 313, 596, 871, 878, 1179, 1188, 1256
BstNI	CCWGG	3 cut(s)	400, 1042, 1261
BstNSI	RCATGY	2 cut(s)	469, 955
BstSCI	CCNGG	4 cut(s)	55, 398, 1040, 1259
BstUI	CGCG	2 cut(s)	202, 340
BstV1I	GCAGC	5 cut(s)	227, 604, 719, 942, 955
BstV2I	GAAGAC	1 cut(s)	1305
BstX2I	RGATCY	2 cut(s)	1139, 1361
BstYI	RGATCY	2 cut(s)	1139, 1361
BstZ17I	GTATAC	1 cut(s)	1002
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	212, 1250
BtgI	CCRYGG	2 cut(s)	207, 1315
BtsCI	GGATG	7 cut(s)	196, 741, 751, 789, 923, 942, 1019
BtsI	GCAGTG	2 cut(s)	71, 1440
BtsIMutI	CAGTG	3 cut(s)	71, 537, 1440
Cac8I	GCNNGC	6 cut(s)	298, 338, 344, 592, 953, 1407
CfoI	GCGC	2 cut(s)	342, 874
Cfr10I	RCCGGY	1 cut(s)	1094
Cfr13I	GGNCC	1 cut(s)	1312
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	4 cut(s)	25, 60, 75, 1232
CspAI	ACCGGT	1 cut(s)	1094
CviAII	CATG	6 cut(s)	415, 466, 555, 626, 895, 952
CviQI	GTAC	4 cut(s)	25, 60, 75, 1232
DdeI	CTNAG	2 cut(s)	347, 404
DpnI	GATC	6 cut(s)	155, 648, 1141, 1200, 1363, 1442
DpnII	GATC	6 cut(s)	153, 646, 1139, 1198, 1361, 1440
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	5 cut(s)	100, 293, 881, 1217, 1296
EarI	CTCTTC	5 cut(s)	100, 293, 881, 1217, 1296
EciI	GGCGGA	2 cut(s)	217, 311
Eco130I	CCWWGG	1 cut(s)	1444
Eco47I	GGWCC	1 cut(s)	1312
Eco57I	CTGAAG	1 cut(s)	505
Eco72I	CACGTG	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	1221
EcoRII	CCWGG	3 cut(s)	398, 1040, 1259
EcoT14I	CCWWGG	1 cut(s)	1444
ErhI	CCWWGG	1 cut(s)	1444
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	6 cut(s)	418, 469, 558, 629, 898, 955
FalI	AAGNNNNNCTT	4 cut(s)	556, 588, 1290, 1322
FaqI	GGGAC	1 cut(s)	955
FatI	CATG	6 cut(s)	414, 465, 554, 625, 894, 951
FauI	CCCGC	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	1001
Fnu4HI	GCNGC	7 cut(s)	213, 216, 276, 618, 708, 956, 969
FokI	GGATG	7 cut(s)	183, 748, 758, 796, 930, 949, 1006
Fsp4HI	GCNGC	7 cut(s)	213, 216, 276, 618, 708, 956, 969
FspBI	CTAG	1 cut(s)	1343
GlaI	GCGC	2 cut(s)	341, 873
GluI	GCNGC	7 cut(s)	213, 216, 276, 618, 708, 956, 969
GsaI	CCCAGC	2 cut(s)	260, 456
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	212, 1250
HapII	CCGG	2 cut(s)	56, 1095
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	342, 874
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	6 cut(s)	418, 469, 558, 629, 898, 955
Hin6I	GCGC	2 cut(s)	340, 872
HinP1I	GCGC	2 cut(s)	340, 872
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	20, 246
HpaII	CCGG	2 cut(s)	56, 1095
HphI	GGTGA	6 cut(s)	90, 283, 1030, 1109, 1126, 1450
Hpy166II	GTNNAC	4 cut(s)	124, 184, 1002, 1100
Hpy188III	TCNNGA	5 cut(s)	677, 702, 1028, 1146, 1295
Hpy8I	GTNNAC	4 cut(s)	124, 184, 1002, 1100
Hpy99I	CGWCG	2 cut(s)	386, 1256
HpyAV	CCTTC	3 cut(s)	42, 1268, 1367
HpyCH4III	ACNGT	4 cut(s)	149, 242, 541, 1055
HpyCH4IV	ACGT	2 cut(s)	602, 1242
HpyCH4V	TGCA	3 cut(s)	469, 971, 1405
HpyF10VI	GCNNNNNNNGC	9 cut(s)	221, 272, 313, 596, 871, 878, 1179, 1188, 1256
HpyF3I	CTNAG	2 cut(s)	347, 404
HpySE526I	ACGT	2 cut(s)	602, 1242
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	6 cut(s)	418, 469, 558, 629, 898, 955
HspAI	GCGC	2 cut(s)	340, 872
Kzo9I	GATC	6 cut(s)	153, 646, 1139, 1198, 1361, 1440
LmnI	GCTCC	1 cut(s)	429
Lsp1109I	GCAGC	5 cut(s)	227, 604, 719, 942, 955
LweI	GCATC	3 cut(s)	784, 868, 1246
MaeI	CTAG	1 cut(s)	1343
MaeII	ACGT	2 cut(s)	602, 1242
MaeIII	GTNAC	4 cut(s)	17, 833, 1036, 1325
MalI	GATC	6 cut(s)	155, 648, 1141, 1200, 1363, 1442
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	6 cut(s)	153, 646, 1139, 1198, 1361, 1440
MfeI	CAATTG	1 cut(s)	1415
MflI	RGATCY	2 cut(s)	1139, 1361
MluCI	AATT	8 cut(s)	13, 37, 308, 493, 1149, 1221, 1386, 1415
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	154
MseI	TTAA	3 cut(s)	167, 1245, 1450
MspI	CCGG	2 cut(s)	56, 1095
MspR9I	CCNGG	4 cut(s)	57, 400, 1042, 1261
MunI	CAATTG	1 cut(s)	1415
Mva1269I	GAATGC	2 cut(s)	971, 1407
MvaI	CCWGG	3 cut(s)	400, 1042, 1261
MvnI	CGCG	2 cut(s)	202, 340
MwoI	GCNNNNNNNGC	9 cut(s)	221, 272, 313, 596, 871, 878, 1179, 1188, 1256
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	6 cut(s)	153, 646, 1139, 1198, 1361, 1440
NlaIII	CATG	6 cut(s)	418, 469, 558, 629, 898, 955
NlaIV	GGNNCC	2 cut(s)	425, 1313
NmuCI	GTSAC	4 cut(s)	17, 833, 1036, 1325
NspI	RCATGY	2 cut(s)	469, 955
PaeI	GCATGC	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	1 cut(s)	1248
PctI	GAATGC	2 cut(s)	971, 1407
PfeI	GAWTC	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	1094
PkrI	GCNGC	7 cut(s)	214, 217, 277, 619, 709, 957, 970
PleI	GAGTC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	603
PmlI	CACGTG	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	1242
Psp6I	CCWGG	3 cut(s)	398, 1040, 1259
PspCI	CACGTG	1 cut(s)	603
PspFI	CCCAGC	2 cut(s)	256, 452
PspGI	CCWGG	3 cut(s)	398, 1040, 1259
PspN4I	GGNNCC	2 cut(s)	425, 1313
PspPI	GGNCC	1 cut(s)	1312
PsuI	RGATCY	2 cut(s)	1139, 1361
RsaI	GTAC	4 cut(s)	26, 61, 76, 1233
RsaNI	GTAC	4 cut(s)	25, 60, 75, 1232
SaqAI	TTAA	3 cut(s)	167, 1245, 1450
SatI	GCNGC	7 cut(s)	213, 216, 276, 618, 708, 956, 969
Sau3AI	GATC	6 cut(s)	153, 646, 1139, 1198, 1361, 1440
Sau96I	GGNCC	1 cut(s)	1312
ScaI	AGTACT	1 cut(s)	76
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	57, 400, 1042, 1261
SfaNI	GCATC	3 cut(s)	784, 868, 1246
SgrAI	CRCCGGYG	1 cut(s)	1094
SinI	GGWCC	1 cut(s)	1312
SphI	GCATGC	1 cut(s)	955
Sse9I	AATT	8 cut(s)	13, 37, 308, 493, 1149, 1221, 1386, 1415
SspMI	CTAG	1 cut(s)	1343
StyD4I	CCNGG	4 cut(s)	55, 398, 1040, 1259
StyI	CCWWGG	1 cut(s)	1444
TaaI	ACNGT	4 cut(s)	149, 242, 541, 1055
TaiI	ACGT	2 cut(s)	605, 1245
TaqI	TCGA	1 cut(s)	1254
TasI	AATT	8 cut(s)	13, 37, 308, 493, 1149, 1221, 1386, 1415
TatI	WGTACW	2 cut(s)	74, 1231
TauI	GCSGC	2 cut(s)	215, 278
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	3 cut(s)	167, 1245, 1450
Tru9I	TTAA	3 cut(s)	167, 1245, 1450
TscAI	CASTG	3 cut(s)	71, 544, 1440
TseFI	GTSAC	4 cut(s)	17, 833, 1036, 1325
TseI	GCWGC	5 cut(s)	215, 617, 707, 955, 968
Tsp45I	GTSAC	4 cut(s)	17, 833, 1036, 1325
TspDTI	ATGAA	4 cut(s)	563, 614, 899, 968
TspGWI	ACGGA	1 cut(s)	1304
TspRI	CASTG	3 cut(s)	71, 544, 1440
VpaK11BI	GGWCC	1 cut(s)	1312
XapI	RAATTY	2 cut(s)	1221, 1386
XceI	RCATGY	2 cut(s)	469, 955
XmiI	GTMKAC	1 cut(s)	1001
XspI	CTAG	1 cut(s)	1343
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.