Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000116.1

Orthogroup ID

OG0013718

Physical Location & Seq

Genomic Coordinates Forward (+)

67423 .. 69936

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000116.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgtccacaaccatctccatgcacgactccgcccccaccgccgctatggccgcagccatatcctcctccgacatgaatggcggattctactccccagccaaagccaaagccgcctccagacccctcttcagcccacgcttcccgccatttcggcgtctccgccacctcttttgcccgcgcaagctcagactcgtcgcctctgttttccttctctgcttcgtcgttttcctctcctccaggctcagctctctcatgggctggctccctccccaacccaactcctcatttccaaggggtggtggattcactgttctgataaacacatggaagcaaagctctgctttgaaacaatcggttgctcactatgccacgtgtgatggggtttctgctattcatgtggtgtggtctgatagtgatccacactcagaaacaatgaaggctcgtcttgaaaagatggtgttttcaaaatcaagagcggctcaaaaacttgactttaggtttgggatgaggcaggatgaggatttgaacaataggtttaagccgattgaggggatgaaaactgatgctgtgttttcggttgatgatgatgtgattgtctcgtgtgacacattggattttgctttcggagtttggcattctgcgccgaatggtatggttgggttcactccgagaatgcattggactgatgaggagaagagtggcgtggcgaattatgagtatgagggatggtggtcagtttggtggatggggacatacagcatgctgcttccgaaagctgcattctttcataggaaatacttggatttgtatacttacgatatgaccgcatccattcgtgattatgtcaccagggaaagaaactgtgaagatattgctatgtcattgcttgttgctaatgccaccggtgcacctccgatttgggtgaaagggaagatgtacgagcttggatcttcaggaattagcggtctgaaaaggcacagcaagagtcgcaacaagtgcctcaatgatctcatctccctcttcggaagaattccccttgtacaaactaacgttaaagctgtcgatgccaggtttgaatggttctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

362

Amino Acids

40.86

Weight (kDa)

9.3

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27500
malus_domestica	MD01G1191300.v1.1
prunus_persica	Prupe.2G285700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375981
rosa_laevigata	RLG00000026638
rosa_multiflora	Rmu_co8445477.1_g000001 Rmu_sc0024503.1_g000003 Rmu_ssc0000116.1_g000010 Rmu_ssc0000116.1_g000011
rosa_roxburghii	Rroxscaffold_4G00282450
rosa_rugosa	Rorug01G0393300 Rorug01G0393400 Rorug02G0306700
rosa_samantha	Rh1AG404700 Rh1BG368200 Rh1CG381100 Rh1DG398100
rosa_wichuraiana	Rw1G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	809
AccII	CGCG	1 cut(s)	178
AclI	AACGTT	1 cut(s)	1050
AclWI	GGATC	2 cut(s)	410, 955
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	1029
AcuI	CTGAAG	2 cut(s)	112, 936
AcvI	CACGTG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	2 cut(s)	938, 1041
AfiI	CCNNNNNNNGG	2 cut(s)	296, 548
AflIII	ACRYGT	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	902
AgsI	TTSAA	5 cut(s)	346, 449, 465, 526, 1076
AjnI	CCWGG	3 cut(s)	236, 848, 1067
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	6 cut(s)	184, 246, 336, 776, 943, 1058
AluI	AGCT	6 cut(s)	184, 246, 336, 776, 943, 1058
Alw21I	GWGCWC	1 cut(s)	910
Alw26I	GTCTC	2 cut(s)	161, 601
Alw44I	GTGCAC	1 cut(s)	906
AlwI	GGATC	2 cut(s)	410, 955
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	906
ApeKI	GCWGC	3 cut(s)	53, 763, 776
ApoI	RAATTY	1 cut(s)	1029
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AsiGI	ACCGGT	1 cut(s)	902
AspLEI	GCGC	2 cut(s)	180, 643
AsuHPI	GGTGA	2 cut(s)	838, 934
BaeGI	GKGCMC	1 cut(s)	910
BauI	CACGAG	1 cut(s)	598
BbrPI	CACGTG	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	910
BbvI	GCAGC	3 cut(s)	65, 750, 763
BccI	CCATC	5 cut(s)	20, 371, 448, 720, 739
BciT130I	CCWGG	3 cut(s)	238, 850, 1069
BcoDI	GTCTC	2 cut(s)	161, 601
BglI	GCCNNNNNGGC	2 cut(s)	47, 151
BisI	GCNGC	7 cut(s)	42, 51, 54, 111, 477, 764, 777
BlpI	GCTNAGC	1 cut(s)	242
BlsI	GCNGC	7 cut(s)	43, 52, 55, 112, 478, 765, 778
Bme1390I	CCNGG	3 cut(s)	238, 850, 1069
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	3 cut(s)	238, 850, 1069
BmsI	GCATC	3 cut(s)	553, 836, 1054
BpmI	CTGGAG	2 cut(s)	100, 220
Bpu1102I	GCTNAGC	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	290, 849
BsaWI	WCCGGW	1 cut(s)	902
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 548
Bse118I	RCCGGY	1 cut(s)	902
Bse3DI	GCAATG	1 cut(s)	881
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	3 cut(s)	238, 850, 1069
BseDI	CCNNGG	2 cut(s)	290, 849
BseGI	GGATG	6 cut(s)	510, 520, 558, 731, 750, 827
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	296, 548
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	3 cut(s)	199, 256, 438
BseRI	GAGGAG	4 cut(s)	55, 223, 271, 704
BseSI	GKGCMC	1 cut(s)	910
BseXI	GCAGC	3 cut(s)	65, 750, 763
BseYI	CCCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	50
BshTI	ACCGGT	1 cut(s)	902
BsiHKAI	GWGCWC	1 cut(s)	910
BsiSI	CCGG	1 cut(s)	903
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	2 cut(s)	296, 548
BsmAI	GTCTC	2 cut(s)	161, 601
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	763
BsmI	GAATGC	3 cut(s)	634, 678, 779
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	910
Bsp1407I	TGTACA	1 cut(s)	1039
Bsp143I	GATC	3 cut(s)	415, 947, 1006
Bsp1720I	GCTNAGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	198, 255, 437
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	410, 955
BsrBI	CCGCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	881
BsrFI	RCCGGY	1 cut(s)	902
BsrGI	TGTACA	1 cut(s)	1039
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	2 cut(s)	290, 849
BssMI	GATC	3 cut(s)	415, 947, 1006
BssNAI	GTATAC	1 cut(s)	810
BssNI	GRCGYC	1 cut(s)	154
BssSI	CACGAG	1 cut(s)	598
BssT1I	CCWWGG	1 cut(s)	290
Bst1107I	GTATAC	1 cut(s)	810
Bst2BI	CACGAG	1 cut(s)	598
Bst2UI	CCWGG	3 cut(s)	238, 850, 1069
Bst4CI	ACNGT	2 cut(s)	310, 863
Bst6I	CTCTTC	3 cut(s)	131, 689, 1025
BstACI	GRCGYC	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	996
BstAUI	TGTACA	1 cut(s)	1039
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	4 cut(s)	176, 182, 260, 761
BstDEI	CTNAG	3 cut(s)	185, 242, 424
BstF5I	GGATG	6 cut(s)	510, 520, 558, 731, 750, 827
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	180, 643
BstKTI	GATC	3 cut(s)	418, 950, 1009
BstMAI	GTCTC	2 cut(s)	161, 601
BstMBI	GATC	3 cut(s)	415, 947, 1006
BstNI	CCWGG	3 cut(s)	238, 850, 1069
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	3 cut(s)	236, 848, 1067
BstSLI	GKGCMC	1 cut(s)	910
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	65, 750, 763
BstX2I	RGATCY	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	947
BstZ17I	GTATAC	1 cut(s)	810
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	6 cut(s)	510, 520, 558, 731, 750, 827
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	4 cut(s)	176, 182, 260, 761
CfoI	GCGC	2 cut(s)	180, 643
Cfr10I	RCCGGY	1 cut(s)	902
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	937, 1040
CspAI	ACCGGT	1 cut(s)	902
CspCI	CAANNNNNGTGG	2 cut(s)	152, 187
CviAII	CATG	6 cut(s)	19, 73, 253, 324, 395, 760
CviQI	GTAC	2 cut(s)	937, 1040
DdeI	CTNAG	3 cut(s)	185, 242, 424
DpnI	GATC	3 cut(s)	417, 949, 1008
DpnII	GATC	3 cut(s)	415, 947, 1006
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	3 cut(s)	131, 689, 1025
EarI	CTCTTC	3 cut(s)	131, 689, 1025
EciI	GGCGGA	3 cut(s)	19, 96, 149
Eco130I	CCWWGG	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	112, 936
Eco72I	CACGTG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	1029
EcoRII	CCWGG	3 cut(s)	236, 848, 1067
EcoT14I	CCWWGG	1 cut(s)	290
EcoT22I	ATGCAT	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	6 cut(s)	22, 76, 256, 327, 398, 763
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	6 cut(s)	18, 72, 252, 323, 394, 759
FauI	CCCGC	2 cut(s)	150, 183
FblI	GTMKAC	1 cut(s)	809
Fnu4HI	GCNGC	7 cut(s)	42, 51, 54, 111, 477, 764, 777
FokI	GGATG	6 cut(s)	517, 527, 565, 738, 757, 814
Fsp4HI	GCNGC	7 cut(s)	42, 51, 54, 111, 477, 764, 777
GlaI	GCGC	2 cut(s)	179, 642
GluI	GCNGC	7 cut(s)	42, 51, 54, 111, 477, 764, 777
GsaI	CCCAGC	1 cut(s)	98
GsuI	CTGGAG	2 cut(s)	100, 220
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	903
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	180, 643
Hin1I	GRCGYC	1 cut(s)	154
Hin1II	CATG	6 cut(s)	22, 76, 256, 327, 398, 763
Hin6I	GCGC	2 cut(s)	178, 641
HinP1I	GCGC	2 cut(s)	178, 641
HinfI	GANTC	5 cut(s)	26, 84, 189, 303, 985
HpaII	CCGG	1 cut(s)	903
HphI	GGTGA	2 cut(s)	838, 934
Hpy166II	GTNNAC	4 cut(s)	6, 663, 810, 908
Hpy188III	TCNNGA	5 cut(s)	117, 446, 471, 836, 954
Hpy8I	GTNNAC	4 cut(s)	6, 663, 810, 908
Hpy99I	CGWCG	2 cut(s)	197, 224
HpyAV	CCTTC	2 cut(s)	218, 430
HpyCH4III	ACNGT	2 cut(s)	310, 863
HpyCH4IV	ACGT	2 cut(s)	371, 1050
HpyCH4V	TGCA	4 cut(s)	22, 676, 779, 908
HpyF3I	CTNAG	3 cut(s)	185, 242, 424
HpySE526I	ACGT	2 cut(s)	371, 1050
Hsp92I	GRCGYC	1 cut(s)	154
Hsp92II	CATG	6 cut(s)	22, 76, 256, 327, 398, 763
HspAI	GCGC	2 cut(s)	178, 641
Kzo9I	GATC	3 cut(s)	415, 947, 1006
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	3 cut(s)	65, 750, 763
LweI	GCATC	3 cut(s)	553, 836, 1054
MaeII	ACGT	2 cut(s)	371, 1050
MaeIII	GTNAC	2 cut(s)	602, 844
MalI	GATC	3 cut(s)	417, 949, 1008
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	3 cut(s)	415, 947, 1006
MboII	GAAGA	7 cut(s)	118, 706, 878, 942, 943, 1012, 1038
MflI	RGATCY	1 cut(s)	947
MhlI	GDGCHC	1 cut(s)	910
MluCI	AATT	3 cut(s)	709, 957, 1029
MlyI	GAGTC	3 cut(s)	20, 183, 994
MmeI	TCCRAC	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	678
MseI	TTAA	2 cut(s)	537, 1053
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	903
MspR9I	CCNGG	3 cut(s)	238, 850, 1069
Mva1269I	GAATGC	3 cut(s)	634, 678, 779
MvaI	CCWGG	3 cut(s)	238, 850, 1069
MvnI	CGCG	1 cut(s)	178
NdeII	GATC	3 cut(s)	415, 947, 1006
NlaIII	CATG	6 cut(s)	22, 76, 256, 327, 398, 763
NlaIV	GGNNCC	1 cut(s)	263
NmuCI	GTSAC	2 cut(s)	602, 844
NsiI	ATGCAT	1 cut(s)	678
NspI	RCATGY	1 cut(s)	763
PaeI	GCATGC	1 cut(s)	763
PctI	GAATGC	3 cut(s)	634, 678, 779
PfeI	GAWTC	2 cut(s)	84, 303
PflMI	CCANNNNNTGG	1 cut(s)	296
PinAI	ACCGGT	1 cut(s)	902
PkrI	GCNGC	7 cut(s)	43, 52, 55, 112, 478, 765, 778
PleI	GAGTC	3 cut(s)	20, 183, 993
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
PpsI	GAGTC	3 cut(s)	20, 183, 993
Ppu21I	YACGTR	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	1050
Psp6I	CCWGG	3 cut(s)	236, 848, 1067
PspCI	CACGTG	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	3 cut(s)	236, 848, 1067
PspN4I	GGNNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	947
RsaI	GTAC	2 cut(s)	938, 1041
RsaNI	GTAC	2 cut(s)	937, 1040
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	537, 1053
SatI	GCNGC	7 cut(s)	42, 51, 54, 111, 477, 764, 777
Sau3AI	GATC	3 cut(s)	415, 947, 1006
SchI	GAGTC	3 cut(s)	20, 183, 994
ScrFI	CCNGG	3 cut(s)	238, 850, 1069
SduI	GDGCHC	1 cut(s)	910
SfaNI	GCATC	3 cut(s)	553, 836, 1054
SgrAI	CRCCGGYG	1 cut(s)	902
SmiMI	CAYNNNNRTG	1 cut(s)	17
SphI	GCATGC	1 cut(s)	763
Sse9I	AATT	3 cut(s)	709, 957, 1029
StyD4I	CCNGG	3 cut(s)	236, 848, 1067
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	310, 863
TaiI	ACGT	2 cut(s)	374, 1053
TaqI	TCGA	1 cut(s)	1062
TasI	AATT	3 cut(s)	709, 957, 1029
TatI	WGTACW	1 cut(s)	1039
TauI	GCSGC	4 cut(s)	44, 53, 113, 479
TfiI	GAWTC	2 cut(s)	84, 303
Tru1I	TTAA	2 cut(s)	537, 1053
Tru9I	TTAA	2 cut(s)	537, 1053
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	602, 844
TseI	GCWGC	3 cut(s)	53, 763, 776
Tsp45I	GTSAC	2 cut(s)	602, 844
TspDTI	ATGAA	5 cut(s)	89, 383, 449, 569, 776
TspRI	CASTG	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	906
XapI	RAATTY	1 cut(s)	1029
XceI	RCATGY	1 cut(s)	763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	809
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.