Rmu_ssc0000116.1_g000010

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000116.1
OG0013718
Physical Location & Seq
Forward (+)
61306 .. 63602
2297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000116.1_g000010.1.cds

Sequence Viewer

Length: 558 bp
atggcgaaagatgagtattggggatggtggtcagtttggtggatggggacatatagcatgctgcttccaaaagctgcattctttcataggaaatacttggatttgtatacttatgctatgccctcatccattcgtgattatgtcaccagggagaggaactgtgaagatattgctatgtcattgcttgttgctaatgccaccggtgaacctctgatttgggtgaaagtgaagatatacgagcttggatcttcaagaattagcagtctgaaaagacacagcaagagtggcaacaagtgcctcaatgatctcatctccctcttcggaagaattccccttgtacaatctaacgttaaggccgtcgatgccagggcaatgacagaaggttgtggttgttctcttcaagaagacttgctttgggtccgtggaagttgtgacaatatgagtgtcctagtagtttcgttgaacagatccaagagagaaggcaaagctgaaattcaagtattgggagtgcaagcaatacaattgtttggagaggtggcagtggtgatccaaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

185

Amino Acids

20.88

Weight (kDa)

8.8

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 107
AclI AACGTT 1 cut(s) 348
AclWI GGATC 3 cut(s) 253, 462, 541
AcsI RAATTY 2 cut(s) 327, 492
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 153
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 4 cut(s) 252, 401, 463, 497
AjnI CCWGG 2 cut(s) 146, 365
AluBI AGCT 3 cut(s) 74, 241, 488
AluI AGCT 3 cut(s) 74, 241, 488
AlwI GGATC 3 cut(s) 253, 462, 541
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 61, 74
ApoI RAATTY 2 cut(s) 327, 492
AsiGI ACCGGT 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 4 cut(s) 136, 215, 232, 556
AvaII GGWCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 48, 61
BccI CCATC 2 cut(s) 18, 37
BceAI ACGGC 1 cut(s) 341
BciT130I CCWGG 2 cut(s) 148, 367
BfaI CTAG 1 cut(s) 449
BisI GCNGC 2 cut(s) 62, 75
BlsI GCNGC 2 cut(s) 63, 76
Bme1390I CCNGG 2 cut(s) 148, 367
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 419
BmrFI CCNGG 2 cut(s) 148, 367
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 411
BsaJI CCNNGG 4 cut(s) 147, 366, 421, 550
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse118I RCCGGY 1 cut(s) 200
Bse3DI GCAATG 2 cut(s) 179, 378
BseBI CCWGG 2 cut(s) 148, 367
BseDI CCNNGG 4 cut(s) 147, 366, 421, 550
BseGI GGATG 3 cut(s) 29, 48, 125
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMI GCAATG 2 cut(s) 179, 378
BseXI GCAGC 2 cut(s) 48, 61
BshFI GGCC 1 cut(s) 356
BshTI ACCGGT 1 cut(s) 200
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 1 cut(s) 356
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 4 cut(s) 245, 304, 467, 546
BspANI GGCC 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 419
BspPI GGATC 3 cut(s) 253, 462, 541
BsrDI GCAATG 2 cut(s) 179, 378
BsrFI RCCGGY 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 147, 366, 421, 550
BssMI GATC 4 cut(s) 245, 304, 467, 546
BssNAI GTATAC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 550
Bst1107I GTATAC 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 148, 367
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 323, 402
BstAPI GCANNNNNTGC 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 59, 513
BstDSI CCRYGG 1 cut(s) 421
BstF5I GGATG 3 cut(s) 29, 48, 125
BstKTI GATC 4 cut(s) 248, 307, 470, 549
BstMBI GATC 4 cut(s) 245, 304, 467, 546
BstMWI GCNNNNNNNGC 3 cut(s) 285, 294, 362
BstNI CCWGG 2 cut(s) 148, 367
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 146, 365
BstV1I GCAGC 2 cut(s) 48, 61
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 2 cut(s) 245, 467
BstYI RGATCY 2 cut(s) 245, 467
BstZ17I GTATAC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 421
BtsCI GGATG 3 cut(s) 29, 48, 125
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 2 cut(s) 59, 513
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 338
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 74, 241, 356, 488
CviKI_1 RGCY 4 cut(s) 74, 241, 356, 488
CviQI GTAC 1 cut(s) 338
DpnI GATC 4 cut(s) 247, 306, 469, 548
DpnII GATC 4 cut(s) 245, 304, 467, 546
Eam1104I CTCTTC 2 cut(s) 323, 402
EarI CTCTTC 2 cut(s) 323, 402
Eco130I CCWWGG 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 146, 365
EcoT14I CCWWGG 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 1 cut(s) 61
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 61
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 62, 75
FokI GGATG 3 cut(s) 36, 55, 112
Fsp4HI GCNGC 2 cut(s) 62, 75
FspBI CTAG 1 cut(s) 449
GluI GCNGC 2 cut(s) 62, 75
HaeIII GGCC 1 cut(s) 356
HapII CCGG 1 cut(s) 201
Hin1II CATG 1 cut(s) 61
HpaII CCGG 1 cut(s) 201
HphI GGTGA 4 cut(s) 136, 215, 232, 556
Hpy166II GTNNAC 2 cut(s) 108, 206
Hpy188I TCNGA 3 cut(s) 213, 267, 323
Hpy188III TCNNGA 3 cut(s) 134, 252, 401
Hpy8I GTNNAC 2 cut(s) 108, 206
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 2 cut(s) 374, 473
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 77, 511
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 294, 362
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 4 cut(s) 245, 304, 467, 546
LpnPI CCDG 5 cut(s) 133, 160, 214, 352, 379
Lsp1109I GCAGC 2 cut(s) 48, 61
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 449
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 142, 431
MalI GATC 4 cut(s) 247, 306, 469, 548
MboI GATC 4 cut(s) 245, 304, 467, 546
MboII GAAGA 7 cut(s) 176, 240, 241, 310, 336, 389, 416
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 2 cut(s) 245, 467
MluCI AATT 4 cut(s) 255, 327, 492, 521
MnlI CCTC 6 cut(s) 133, 147, 219, 308, 326, 526
MseI TTAA 2 cut(s) 351, 556
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 148, 367
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 2 cut(s) 148, 367
MwoI GCNNNNNNNGC 3 cut(s) 285, 294, 362
NdeII GATC 4 cut(s) 245, 304, 467, 546
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 419
NmuCI GTSAC 2 cut(s) 142, 431
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PctI GAATGC 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 2 cut(s) 63, 76
Psp1406I AACGTT 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 146, 365
PspGI CCWGG 2 cut(s) 146, 365
PspN4I GGNNCC 1 cut(s) 419
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 2 cut(s) 245, 467
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 351, 556
SatI GCNGC 2 cut(s) 62, 75
Sau3AI GATC 4 cut(s) 245, 304, 467, 546
Sau96I GGNCC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 148, 367
SetI ASST 8 cut(s) 76, 211, 243, 351, 385, 490, 537, 556
SfaNI GCATC 1 cut(s) 352
SgrAI CRCCGGYG 1 cut(s) 200
SinI GGWCC 1 cut(s) 418
SphI GCATGC 1 cut(s) 61
Sse9I AATT 4 cut(s) 255, 327, 492, 521
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 146, 365
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 360
TasI AATT 4 cut(s) 255, 327, 492, 521
TatI WGTACW 1 cut(s) 337
Tru1I TTAA 2 cut(s) 351, 556
Tru9I TTAA 2 cut(s) 351, 556
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 2 cut(s) 142, 431
TseI GCWGC 2 cut(s) 61, 74
Tsp45I GTSAC 2 cut(s) 142, 431
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 2 cut(s) 327, 492
XceI RCATGY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.