Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013718

Physical Location & Seq

Genomic Coordinates Reverse (-)

50384323 .. 50385745

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0393300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATCATCCCGGCGAACGAGTTCGAGATCCTCTCTTGCGATTTGAACAAGTACGACGACTGCGTCATCGCCATCACCTTCGTCGACAAATCGATCAAGCAAGAGGATGAAGAGGTGCTGGTGCTGCATACGGATTTGGTCGAAGGTCCTCAGCCGATGGAAGTAGCTCAAGTGGAGCCGGCTAGTACAGTTGATAATCAGCCAATGGAGGAGCCTCTAACCGTGAAATTGACTTGGACAATTGAGAGCTTGTCTAGGTTGAACACCAAAAAGCACTACTCTGACATGTTCATGGTTGGTGGTTATAAATTGTATTCTTCCCTTGACAATCATCGTATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

114

Amino Acids

13.02

Weight (kDa)

4.46

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27500
malus_domestica	MD01G1191300.v1.1
prunus_persica	Prupe.2G285700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375981
rosa_laevigata	RLG00000026638
rosa_multiflora	Rmu_co8445477.1_g000001 Rmu_sc0024503.1_g000003 Rmu_ssc0000116.1_g000010 Rmu_ssc0000116.1_g000011
rosa_roxburghii	Rroxscaffold_4G00282450
rosa_rugosa	Rorug01G0393300 Rorug01G0393400 Rorug02G0306700
rosa_samantha	Rh1AG404700 Rh1BG368200 Rh1CG381100 Rh1DG398100
rosa_wichuraiana	Rw1G035890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AasI	GACNNNNNNGTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	22
AfaI	GTAC	2 cut(s)	53, 187
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	46, 262
AluBI	AGCT	2 cut(s)	167, 249
AluI	AGCT	2 cut(s)	167, 249
AlwI	GGATC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	2 cut(s)	80, 151
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	2 cut(s)	183, 255
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	177, 213
BmrFI	CCNGG	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bpu10I	CCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	92
BseGI	GGATG	2 cut(s)	6, 112
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	11, 179
Bsp143I	GATC	3 cut(s)	3, 27, 93
BspCNI	CTCAG	1 cut(s)	163
BspDI	ATCGAT	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	177, 213
BspPI	GGATC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	3 cut(s)	3, 27, 93
Bst4CI	ACNGT	2 cut(s)	190, 223
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	6, 112
BstKTI	GATC	3 cut(s)	6, 30, 96
BstMBI	GATC	3 cut(s)	3, 27, 93
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	6, 112
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	146
ClaI	ATCGAT	1 cut(s)	92
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	52, 186
CviAII	CATG	2 cut(s)	286, 292
CviJI	RGCY	7 cut(s)	154, 167, 178, 182, 202, 214, 249
CviKI_1	RGCY	7 cut(s)	154, 167, 178, 182, 202, 214, 249
CviQI	GTAC	2 cut(s)	52, 186
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	5, 29, 95
DpnII	GATC	3 cut(s)	3, 27, 93
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	146
FaeI	CATG	2 cut(s)	289, 295
FaiI	YATR	5 cut(s)	129, 287, 293, 306, 338
FatI	CATG	2 cut(s)	285, 291
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	2 cut(s)	183, 255
GluI	GCNGC	1 cut(s)	125
HapII	CCGG	2 cut(s)	11, 179
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	289, 295
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HpaII	CCGG	2 cut(s)	11, 179
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	59, 86
HpyAV	CCTTC	2 cut(s)	88, 137
HpyCH4III	ACNGT	2 cut(s)	190, 223
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	289, 295
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 27, 93
LmnI	GCTCC	2 cut(s)	175, 211
LpnPI	CCDG	3 cut(s)	24, 104, 192
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	2 cut(s)	183, 255
MalI	GATC	3 cut(s)	5, 29, 95
MboI	GATC	3 cut(s)	3, 27, 93
MboII	GAAGA	2 cut(s)	122, 309
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	3 cut(s)	227, 240, 308
MnlI	CCTC	6 cut(s)	41, 97, 106, 159, 202, 225
MroNI	GCCGGC	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	2 cut(s)	11, 179
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	124
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	3, 27, 93
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	289, 295
NlaIV	GGNNCC	2 cut(s)	177, 213
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	126
PpuMI	RGGWCCY	1 cut(s)	146
PscI	ACATGT	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	177, 213
PspPI	GGNCC	1 cut(s)	146
PspPPI	RGGWCCY	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	2 cut(s)	53, 187
RsaNI	GTAC	2 cut(s)	52, 186
RseI	CAYNNNNRTG	1 cut(s)	290
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	3 cut(s)	3, 27, 93
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	6 cut(s)	80, 117, 148, 169, 251, 260
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	3 cut(s)	227, 240, 308
SspMI	CTAG	2 cut(s)	183, 255
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	190, 223
TaqI	TCGA	4 cut(s)	24, 84, 92, 141
TasI	AATT	3 cut(s)	227, 240, 308
TatI	WGTACW	1 cut(s)	185
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	123, 280
TspGWI	ACGGA	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	146
XceI	RCATGY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	183, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.