Rh1AG404700

Glycosyl transferase family 64 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0013718
Physical Location & Seq
Forward (+)
63218294 .. 63220563
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG404700.1

Sequence Viewer

Length: 837 bp
ATGGGCTGGCTCCCTCCCCAATGCAACTCCTCATTTCCAAGGGGTGGTGGATACACTGTTCTGATAAACACATGGAAGCAAAGCTCTGCTTTGAAGCAATCGGTTGCTCACTATGCCACGTGTGATGGGGTTGCTTCTATTCATGTGGTGTGGTCTGATAGTGATCCGCCCTCGGAAACTTTGAAGTCTCGTCTTGAAAATATGGTGTTTTCAAAGTCAAGAGCAGCTCAAAAACCTGACTTCAGGTTTGGGATGAGGCAGGATGAGGATTTGAACAACAGGTTCAAGCCAATTGAGGGGATCATAACTGATGCTGTGTTTTCGGTTGATGATGATGTGATTGTCTCGTGTGGCACACTGGATTTTGCTTTCGGAGTTTGGCAGTCTGCGCCGAATGGTATGGTTGGGTTCACTCCGAGAATGCATTGGATTGATGAGGAGAAGGGTCGCTTGGCGAATTATGAGTATGGGGGATGGTGGTCAGTTTGGTGGATGGGGACATACAGCATGCTGCTTCCGAAAGCTGCATTCTTTCATAGGAAATACTTGGATTTGTATACTTACGATATGACCGCATCCATTCGTGATTATGTCACCAGGGAAAGAAACTGTGAAGATATTGCTATGTCATTGCTTGTTGCTAATGCCACCGGTGCACCTCCGATTTGGGTGAAAGGGAAGATGTACGAGCTTGGATCTTCAGGAATTAGCGGTCTGAAAAGGCACAGCAAGAGTCGCAACAAGTGCCTCAATGATCTCATCTCCCTCTTCGGAAGAATTCCCCTTGTACAAACTAACGTTAAAGCTGTCGATGCCAGGTTTGAATGGTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Glyco_transf_64

Protein Analysis

278

Amino Acids

31.56

Weight (kDa)

8.21

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 18 - 269 5.7e-68 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 44
AccI GTMKAC 1 cut(s) 557
AciI CCGC 3 cut(s) 167, 573, 711
AclI AACGTT 1 cut(s) 798
AclWI GGATC 3 cut(s) 158, 308, 703
AcsI RAATTY 1 cut(s) 777
AcuI CTGAAG 2 cut(s) 226, 684
AcvI CACGTG 1 cut(s) 120
AfaI GTAC 2 cut(s) 686, 789
AfiI CCNNNNNNNGG 2 cut(s) 44, 296
AflIII ACRYGT 1 cut(s) 119
AgeI ACCGGT 1 cut(s) 650
AgsI TTSAA 7 cut(s) 94, 184, 197, 213, 274, 286, 824
AjnI CCWGG 2 cut(s) 596, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
AluBI AGCT 5 cut(s) 84, 227, 524, 691, 806
AluI AGCT 5 cut(s) 84, 227, 524, 691, 806
Alw21I GWGCWC 1 cut(s) 658
Alw26I GTCTC 2 cut(s) 192, 349
Alw44I GTGCAC 1 cut(s) 654
AlwI GGATC 3 cut(s) 158, 308, 703
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 3 cut(s) 224, 511, 524
ApoI RAATTY 1 cut(s) 777
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AsiGI ACCGGT 1 cut(s) 650
AspLEI GCGC 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 586, 682
BaeGI GKGCMC 1 cut(s) 658
BauI CACGAG 1 cut(s) 346
BbrPI CACGTG 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 3 cut(s) 236, 498, 511
BccI CCATC 3 cut(s) 119, 468, 487
BciT130I CCWGG 2 cut(s) 598, 817
BciVI GTATCC 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 192, 349
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 3 cut(s) 225, 512, 525
BlsI GCNGC 3 cut(s) 226, 513, 526
Bme1390I CCNGG 2 cut(s) 598, 817
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 598, 817
BmsI GCATC 3 cut(s) 301, 584, 802
BsaAI YACGTR 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 38, 171, 597
BsaWI WCCGGW 1 cut(s) 650
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 296
Bse118I RCCGGY 1 cut(s) 650
Bse1I ACTGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 629
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 2 cut(s) 598, 817
BseDI CCNNGG 3 cut(s) 38, 171, 597
BseGI GGATG 5 cut(s) 258, 268, 479, 498, 575
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 44, 296
BseMI GCAATG 1 cut(s) 629
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 2 cut(s) 19, 452
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 3 cut(s) 236, 498, 511
BshTI ACCGGT 1 cut(s) 650
BsiHKAI GWGCWC 1 cut(s) 658
BsiSI CCGG 1 cut(s) 651
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 44, 296
BsmAI GTCTC 2 cut(s) 192, 349
BsmFI GGGAC 1 cut(s) 511
BsmI GAATGC 2 cut(s) 426, 527
Bsp1286I GDGCHC 1 cut(s) 658
Bsp1407I TGTACA 1 cut(s) 787
Bsp143I GATC 4 cut(s) 163, 300, 695, 754
BspACI CCGC 3 cut(s) 167, 573, 711
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 3 cut(s) 158, 308, 703
BsrDI GCAATG 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 650
BsrGI TGTACA 1 cut(s) 787
BsrI ACTGG 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 3 cut(s) 38, 171, 597
BssMI GATC 4 cut(s) 163, 300, 695, 754
BssNAI GTATAC 1 cut(s) 558
BssSI CACGAG 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 38
Bst1107I GTATAC 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 346
Bst2UI CCWGG 2 cut(s) 598, 817
Bst4CI ACNGT 2 cut(s) 58, 611
Bst6I CTCTTC 1 cut(s) 773
BstAPI GCANNNNNTGC 1 cut(s) 744
BstAUI TGTACA 1 cut(s) 787
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 8, 509
BstF5I GGATG 5 cut(s) 258, 268, 479, 498, 575
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 4 cut(s) 166, 303, 698, 757
BstMAI GTCTC 2 cut(s) 192, 349
BstMBI GATC 4 cut(s) 163, 300, 695, 754
BstMWI GCNNNNNNNGC 6 cut(s) 113, 388, 653, 735, 744, 812
BstNI CCWGG 2 cut(s) 598, 817
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 2 cut(s) 596, 815
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 3 cut(s) 236, 498, 511
BstX2I RGATCY 1 cut(s) 695
BstYI RGATCY 1 cut(s) 695
BstZ17I GTATAC 1 cut(s) 558
BsuI GTATCC 1 cut(s) 44
BtsCI GGATG 5 cut(s) 258, 268, 479, 498, 575
BtsIMutI CAGTG 2 cut(s) 54, 356
Cac8I GCNNGC 2 cut(s) 8, 509
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 650
Csp6I GTAC 2 cut(s) 685, 788
CspAI ACCGGT 1 cut(s) 650
CviAII CATG 3 cut(s) 72, 143, 508
CviJI RGCY 8 cut(s) 6, 10, 84, 227, 289, 524, 691, 806
CviKI_1 RGCY 8 cut(s) 6, 10, 84, 227, 289, 524, 691, 806
CviQI GTAC 2 cut(s) 685, 788
DpnI GATC 4 cut(s) 165, 302, 697, 756
DpnII GATC 4 cut(s) 163, 300, 695, 754
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 226, 684
Eco72I CACGTG 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 2 cut(s) 596, 815
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 3 cut(s) 75, 146, 511
FalI AAGNNNNNCTT 4 cut(s) 73, 105, 434, 466
FaqI GGGAC 1 cut(s) 511
FatI CATG 3 cut(s) 71, 142, 507
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 3 cut(s) 225, 512, 525
FokI GGATG 5 cut(s) 265, 275, 486, 505, 562
Fsp4HI GCNGC 3 cut(s) 225, 512, 525
GlaI GCGC 1 cut(s) 390
GluI GCNGC 3 cut(s) 225, 512, 525
HapII CCGG 1 cut(s) 651
HhaI GCGC 1 cut(s) 391
Hin1II CATG 3 cut(s) 75, 146, 511
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 1 cut(s) 733
HpaII CCGG 1 cut(s) 651
HphI GGTGA 2 cut(s) 586, 682
Hpy166II GTNNAC 3 cut(s) 411, 558, 656
Hpy188I TCNGA 9 cut(s) 63, 157, 175, 374, 417, 519, 663, 717, 773
Hpy188III TCNNGA 4 cut(s) 194, 219, 584, 702
Hpy8I GTNNAC 3 cut(s) 411, 558, 656
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 2 cut(s) 58, 611
HpyCH4IV ACGT 2 cut(s) 119, 798
HpyCH4V TGCA 4 cut(s) 24, 424, 527, 656
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 388, 653, 735, 744, 812
HpySE526I ACGT 2 cut(s) 119, 798
Hsp92II CATG 3 cut(s) 75, 146, 511
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 4 cut(s) 163, 300, 695, 754
LmnI GCTCC 1 cut(s) 15
Lsp1109I GCAGC 3 cut(s) 236, 498, 511
LweI GCATC 3 cut(s) 301, 584, 802
MaeII ACGT 2 cut(s) 119, 798
MaeIII GTNAC 1 cut(s) 592
MalI GATC 4 cut(s) 165, 302, 697, 756
MboI GATC 4 cut(s) 163, 300, 695, 754
MboII GAAGA 5 cut(s) 626, 690, 691, 760, 786
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 695
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 4 cut(s) 291, 457, 705, 777
MlyI GAGTC 1 cut(s) 742
Mph1103I ATGCAT 1 cut(s) 426
MseI TTAA 1 cut(s) 801
MspI CCGG 1 cut(s) 651
MspR9I CCNGG 2 cut(s) 598, 817
MunI CAATTG 1 cut(s) 291
Mva1269I GAATGC 2 cut(s) 426, 527
MvaI CCWGG 2 cut(s) 598, 817
MwoI GCNNNNNNNGC 6 cut(s) 113, 388, 653, 735, 744, 812
NdeII GATC 4 cut(s) 163, 300, 695, 754
NlaIII CATG 3 cut(s) 75, 146, 511
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 592
NsiI ATGCAT 1 cut(s) 426
NspI RCATGY 1 cut(s) 511
PaeI GCATGC 1 cut(s) 511
PctI GAATGC 2 cut(s) 426, 527
PflMI CCANNNNNTGG 1 cut(s) 44
PinAI ACCGGT 1 cut(s) 650
PkrI GCNGC 3 cut(s) 226, 513, 526
PleI GAGTC 1 cut(s) 741
PmaCI CACGTG 1 cut(s) 120
PmlI CACGTG 1 cut(s) 120
PpsI GAGTC 1 cut(s) 741
Ppu21I YACGTR 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 798
Psp6I CCWGG 2 cut(s) 596, 815
PspCI CACGTG 1 cut(s) 120
PspGI CCWGG 2 cut(s) 596, 815
PspN4I GGNNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 695
RsaI GTAC 2 cut(s) 686, 789
RsaNI GTAC 2 cut(s) 685, 788
SaqAI TTAA 1 cut(s) 801
SatI GCNGC 3 cut(s) 225, 512, 525
Sau3AI GATC 4 cut(s) 163, 300, 695, 754
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 2 cut(s) 598, 817
SduI GDGCHC 1 cut(s) 658
SfaNI GCATC 3 cut(s) 301, 584, 802
SgrAI CRCCGGYG 1 cut(s) 650
SphI GCATGC 1 cut(s) 511
Sse9I AATT 4 cut(s) 291, 457, 705, 777
SsiI CCGC 3 cut(s) 167, 573, 711
StyD4I CCNGG 2 cut(s) 596, 815
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 58, 611
TaiI ACGT 2 cut(s) 122, 801
TaqI TCGA 1 cut(s) 810
TasI AATT 4 cut(s) 291, 457, 705, 777
TatI WGTACW 1 cut(s) 787
Tru1I TTAA 1 cut(s) 801
Tru9I TTAA 1 cut(s) 801
TscAI CASTG 2 cut(s) 61, 363
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 3 cut(s) 224, 511, 524
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 131, 524
TspRI CASTG 2 cut(s) 61, 363
Van91I CCANNNNNTGG 1 cut(s) 44
VneI GTGCAC 1 cut(s) 654
XapI RAATTY 1 cut(s) 777
XceI RCATGY 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.