FvH4_7g33050

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006800
Physical Location & Seq
Reverse (-)
23614792 .. 23616031
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33050.t1

Sequence Viewer

Length: 459 bp
ATGGCTGATATGCAAATCGTTCTGGCTTCGAAAACTAGTGTAGAGGCGCAGTATGTGGAAATGATGGTTCCTCTCTATTCTCCTGGGTGCGAGAAGAAGGTCAAGAAGGCCCTATCCCACCTCAAAGGAATATACTCGGTAAATGTAGACTACAGCCAACAAAAGGTGACGGTTTGGGGAATATGCAACAAATATGATGTGCTAGCCACCGTAAGGACCAAGAGAAAACACGCTTGCTTTTGGAATCCGGAAGACAACGATATCGGAGAGGAAGGAGAAGAGGAAACGGAGCAACCGCCGACAACGACGATGTCGGAGTCAGACGACGTCTCTACACCACCGATTGCAAAAATAAAGTACTTATTAAGACAGCCTTCTATAAAGGCTCTCACTAGGGTTCGCTCTTTGAGCTTGAAAGCATGGAAGAATGTGTTTACCAGGTCCTATTCATTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

153

Amino Acids

17.26

Weight (kDa)

8.69

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 24 - 60 9.1e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 163, 213
AgsI TTSAA 1 cut(s) 415
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 2 cut(s) 82, 437
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 334
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 109, 216, 441
AsuHPI GGTGA 1 cut(s) 178
AsuII TTCGAA 1 cut(s) 29
AsuNHI GCTAGC 1 cut(s) 202
AvaII GGWCC 2 cut(s) 216, 441
BbsI GAAGAC 1 cut(s) 258
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 84, 439
BcoDI GTCTC 1 cut(s) 334
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 3 cut(s) 36, 203, 393
BfmI CTRYAG 1 cut(s) 151
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 84, 439
Bme18I GGWCC 2 cut(s) 216, 441
BmgT120I GGNCC 3 cut(s) 109, 216, 441
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 84, 439
BmtI GCTAGC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 213
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 84, 439
BseDI CCNNGG 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 163, 213
BshFI GGCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 163, 213
BsmAI GTCTC 1 cut(s) 334
BsmBI CGTCTC 1 cut(s) 334
BsnI GGCC 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 247
BspACI CCGC 1 cut(s) 296
BspANI GGCC 1 cut(s) 110
BspEI TCCGGA 1 cut(s) 247
BspHI TCATGA 1 cut(s) 455
BspLI GGNNCC 1 cut(s) 69
BspOI GCTAGC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 83
BssNI GRCGYC 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 84, 439
Bst4CI ACNGT 2 cut(s) 172, 211
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 204, 235
BstHHI GCGC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNI CCWGG 2 cut(s) 84, 439
BstSCI CCNGG 2 cut(s) 82, 437
BstSFI CTRYAG 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 204, 235
CciI TCATGA 1 cut(s) 455
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 3 cut(s) 109, 216, 441
CsiI ACCWGGT 1 cut(s) 437
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 420, 456
CviJI RGCY 8 cut(s) 5, 26, 110, 156, 206, 373, 386, 411
CviKI_1 RGCY 8 cut(s) 5, 26, 110, 156, 206, 373, 386, 411
CviQI GTAC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 216, 441
EcoO109I RGGNCCY 2 cut(s) 109, 441
EcoRII CCWGG 2 cut(s) 82, 437
EcoRV GATATC 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 2 cut(s) 423, 459
FaiI YATR 8 cut(s) 11, 54, 133, 184, 195, 380, 421, 457
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FatI CATG 2 cut(s) 419, 455
FblI GTMKAC 1 cut(s) 147
FspBI CTAG 3 cut(s) 36, 203, 393
GlaI GCGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 248
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 423, 459
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 2 cut(s) 244, 317
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 148, 435
Hpy188I TCNGA 3 cut(s) 266, 316, 322
Hpy188III TCNNGA 3 cut(s) 103, 248, 456
Hpy8I GTNNAC 2 cut(s) 148, 435
Hpy99I CGWCG 2 cut(s) 310, 329
HpyAV CCTTC 4 cut(s) 91, 100, 266, 384
HpyCH4III ACNGT 2 cut(s) 172, 211
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 3 cut(s) 13, 186, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 423, 459
HspAI GCGC 1 cut(s) 47
Kpn2I TCCGGA 1 cut(s) 247
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 6 cut(s) 8, 69, 96, 261, 424, 451
MabI ACCWGGT 1 cut(s) 437
MaeI CTAG 3 cut(s) 36, 203, 393
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 4 cut(s) 106, 263, 290, 436
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 37, 81, 131, 262, 274
MroI TCCGGA 1 cut(s) 247
MseI TTAA 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 454
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 2 cut(s) 84, 439
MvaI CCWGG 2 cut(s) 84, 439
MwoI GCNNNNNNNGC 1 cut(s) 408
NheI GCTAGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 423, 459
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 166
NspV TTCGAA 1 cut(s) 29
PagI TCATGA 1 cut(s) 455
PfeI GAWTC 1 cut(s) 244
PflFI GACNNNGTC 2 cut(s) 310, 326
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 82, 437
PspGI CCWGG 2 cut(s) 82, 437
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 3 cut(s) 109, 216, 441
PspPPI RGGWCCY 1 cut(s) 441
PsyI GACNNNGTC 2 cut(s) 310, 326
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 454
SaqAI TTAA 1 cut(s) 365
Sau96I GGNCC 3 cut(s) 109, 216, 441
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 84, 439
SetI ASST 6 cut(s) 102, 123, 168, 330, 413, 443
SexAI ACCWGGT 1 cut(s) 437
SfcI CTRYAG 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 2 cut(s) 216, 441
SmiMI CAYNNNNRTG 1 cut(s) 454
SpeI ACTAGT 1 cut(s) 35
SsiI CCGC 1 cut(s) 296
SspMI CTAG 3 cut(s) 36, 203, 393
StyD4I CCNGG 2 cut(s) 82, 437
TaaI ACNGT 2 cut(s) 172, 211
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 29
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 438
TspGWI ACGGA 1 cut(s) 302
Tth111I GACNNNGTC 2 cut(s) 310, 326
VpaK11BI GGWCC 2 cut(s) 216, 441
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 3 cut(s) 36, 203, 393
ZraI GACGTC 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.