Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006800

Physical Location & Seq

Genomic Coordinates Forward (+)

18306124 .. 18307042

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTGATATGCAAATCGTTCTGGCTTTAAAAACTAGTGTGGAAGCGCAGTATGAGGAAATGATGGTTCCTCTTTATTCTCCTGGGTTCGAGAAGAAAGTCAAGAAGGCCCTATCCCACCTCAAAGGAATATACTCGGTGAACGTAGACTGCAGCCAACAAAAGGTGACGGTTTGGGGAATATGCAACAAATACGATAGAAAACACGCTTGCTTTTGGAATCCTGAAGACAACGATATTGAAGAGGACGGAGAGGAAGAAGGAGAGCTACCACCAACGGTGACGATGTCGGAGTCAGACGACTCAACACCACCGATTGCAAAAAGAAAGTATTTATTAAGACAGCCTTCTTTAAAGGCTCTCACCAGGATTCGCTCTTTGAGCTTGAGAGCACGGAAGAAGGTCTTCACGAGGTCCCATTCATTGATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

144

Amino Acids

16.45

Weight (kDa)

8.39

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27590 AT4G27590
fragaria_vesca	FvH4_7g33050
malus_domestica	MD01G1229600.v1.1 MD07G1301600.v1.1
prunus_persica	Prupe.2G320200_v2.0.a1
pyrus_communis	pycom01g23770 pycom07g27430 pycom16g17880
rosa_chinensis	RchiOBHm_Chr1g0383061
rosa_multiflora	Rmu_sc0000634.1_g000005 Rmu_sc0002030.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277650 Rroxscaffold_7G00192580
rosa_rugosa	Rorug01G0438000
rosa_samantha	Rh1AG463700 Rh1BG420900 Rh1CG434400 Rh1DG111000 Rh1DG111100 Rh1DG453500 Rh6CG215000 Rh6DG206100
rosa_wichuraiana	Rw1G008470 Rw1G040850 Rw6G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	82, 365
AluBI	AGCT	2 cut(s)	268, 384
AluI	AGCT	2 cut(s)	268, 384
Alw21I	GWGCWC	1 cut(s)	394
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	109, 414
AsuHPI	GGTGA	4 cut(s)	151, 178, 292, 355
AvaII	GGWCC	1 cut(s)	414
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
BauI	CACGAG	1 cut(s)	409
BbsI	GAAGAC	2 cut(s)	234, 397
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	84, 367
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	84, 367
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	109, 414
BmiI	GGNNCC	2 cut(s)	69, 416
BmrFI	CCNGG	2 cut(s)	84, 367
BpiI	GAAGAC	2 cut(s)	234, 397
BpuEI	CTTGAG	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseBI	CCWGG	2 cut(s)	84, 367
BseDI	CCNNGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	426
BspANI	GGCC	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	69, 416
BspMAI	CTGCAG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	426
BssSI	CACGAG	1 cut(s)	409
Bst2BI	CACGAG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	84, 367
Bst4CI	ACNGT	2 cut(s)	172, 280
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNI	CCWGG	2 cut(s)	84, 367
BstSCI	CCNGG	2 cut(s)	82, 365
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	2 cut(s)	234, 397
BsuRI	GGCC	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	211
CciI	TCATGA	1 cut(s)	431
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	109, 414
CviAII	CATG	1 cut(s)	432
CviJI	RGCY	8 cut(s)	5, 26, 110, 156, 268, 346, 359, 384
CviKI_1	RGCY	8 cut(s)	5, 26, 110, 156, 268, 346, 359, 384
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
DraI	TTTAAA	2 cut(s)	30, 354
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	2 cut(s)	109, 414
EcoRII	CCWGG	2 cut(s)	82, 365
FaeI	CATG	1 cut(s)	435
FaiI	YATR	5 cut(s)	11, 54, 133, 184, 433
FalI	AAGNNNNNCTT	4 cut(s)	331, 363, 389, 421
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	431
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	4 cut(s)	220, 293, 302, 370
HphI	GGTGA	4 cut(s)	151, 178, 292, 355
Hpy166II	GTNNAC	2 cut(s)	142, 148
Hpy188I	TCNGA	2 cut(s)	292, 298
Hpy188III	TCNNGA	5 cut(s)	91, 103, 224, 409, 432
Hpy8I	GTNNAC	2 cut(s)	142, 148
HpyAV	CCTTC	4 cut(s)	100, 254, 357, 394
HpyCH4III	ACNGT	2 cut(s)	172, 280
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	13, 153, 186, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	426
LpnPI	CCDG	6 cut(s)	8, 69, 96, 237, 352, 379
Lsp1109I	GCAGC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	166, 280
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	6 cut(s)	106, 239, 254, 269, 397, 409
MhlI	GDGCHC	1 cut(s)	394
MlyI	GAGTC	2 cut(s)	296, 302
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	49, 81, 131, 238, 247, 405
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	3 cut(s)	29, 338, 353
MspR9I	CCNGG	2 cut(s)	84, 367
MvaI	CCWGG	2 cut(s)	84, 367
MwoI	GCNNNNNNNGC	1 cut(s)	381
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	69, 416
NmuCI	GTSAC	2 cut(s)	166, 280
PagI	TCATGA	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	220, 370
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	2 cut(s)	296, 301
PpsI	GAGTC	2 cut(s)	296, 301
PpuMI	RGGWCCY	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	82, 365
PspGI	CCWGG	2 cut(s)	82, 365
PspN4I	GGNNCC	2 cut(s)	69, 416
PspPI	GGNCC	2 cut(s)	109, 414
PspPPI	RGGWCCY	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	155
PsyI	GACNNNGTC	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	29, 338, 353
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	2 cut(s)	109, 414
SchI	GAGTC	2 cut(s)	296, 302
ScrFI	CCNGG	2 cut(s)	84, 367
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	7 cut(s)	123, 147, 168, 270, 386, 405, 416
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SpeI	ACTAGT	1 cut(s)	35
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	82, 365
TaaI	ACNGT	2 cut(s)	172, 280
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	220, 370
Tru1I	TTAA	3 cut(s)	29, 338, 353
Tru9I	TTAA	3 cut(s)	29, 338, 353
TseFI	GTSAC	2 cut(s)	166, 280
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	2 cut(s)	166, 280
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	2 cut(s)	264, 409
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.