Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006800

Physical Location & Seq

Genomic Coordinates Reverse (-)

67963707 .. 67964090

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG463700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAGAGAATGAATTTTAATTATGTTTATAATAATGAAGAAATTTTAAGTATGTGCACGTACAGGAATATACTCGGTGAACGCCAACAAAAGGTGACGGTTTGGGGAATATGCAACAAATACGATGTGCTAGCCACAATAAGGACCAAGAGAAAACACGCTTGCTTTTGGAATCCTGAAGACAACGATATTGAAGAGGACGGAGAGGAAGAAGCAGAGGTACCACCGACCGTGACGATGTCGGAGTCAGACGACTCAACACCACCGATTGCAAAAAGAAAGTACTTATTAAGACAGCCTTCTTTAAAGGCTCTCACCAGGGTTCGCTCTTTGAGCTTGAGAGCATGGATGAAGGTCTTCACCAGGTCCCATTCATTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

127

Amino Acids

14.95

Weight (kDa)

7.7

Isoelectric Point (pI)

75.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27590 AT4G27590
fragaria_vesca	FvH4_7g33050
malus_domestica	MD01G1229600.v1.1 MD07G1301600.v1.1
prunus_persica	Prupe.2G320200_v2.0.a1
pyrus_communis	pycom01g23770 pycom07g27430 pycom16g17880
rosa_chinensis	RchiOBHm_Chr1g0383061
rosa_multiflora	Rmu_sc0000634.1_g000005 Rmu_sc0002030.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277650 Rroxscaffold_7G00192580
rosa_rugosa	Rorug01G0438000
rosa_samantha	Rh1AG463700 Rh1BG420900 Rh1CG434400 Rh1DG111000 Rh1DG111100 Rh1DG453500 Rh6CG215000 Rh6DG206100
rosa_wichuraiana	Rw1G008470 Rw1G040850 Rw6G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
Acc65I	GGTACC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	13, 42
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	3 cut(s)	62, 222, 284
AfiI	CCNNNNNNNGG	2 cut(s)	91, 141
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	317, 362
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
Alw21I	GWGCWC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	55
ApaLI	GTGCAC	1 cut(s)	55
ApoI	RAATTY	2 cut(s)	13, 42
Asp700I	GAANNNNTTC	1 cut(s)	356
Asp718I	GGTACC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	144, 366
AsuHPI	GGTGA	4 cut(s)	89, 106, 307, 352
AsuNHI	GCTAGC	1 cut(s)	130
AvaII	GGWCC	2 cut(s)	144, 366
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	220
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbsI	GAAGAC	2 cut(s)	186, 349
Bbv12I	GWGCWC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	319, 364
BfaI	CTAG	1 cut(s)	131
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	319, 364
Bme18I	GGWCC	2 cut(s)	144, 366
BmgT120I	GGNCC	2 cut(s)	144, 366
BmiI	GGNNCC	2 cut(s)	222, 368
BmrFI	CCNGG	2 cut(s)	319, 364
BmtI	GCTAGC	1 cut(s)	134
BpiI	GAAGAC	2 cut(s)	186, 349
BpuEI	CTTGAG	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 141
BseBI	CCWGG	2 cut(s)	319, 364
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	91, 141
BseSI	GKGCMC	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	2 cut(s)	91, 141
BsmFI	GGGAC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	59
BspHI	TCATGA	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	222, 368
BspOI	GCTAGC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	319, 364
Bst4CI	ACNGT	2 cut(s)	100, 232
Bst6I	CTCTTC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	132, 163
BstF5I	GGATG	1 cut(s)	354
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNI	CCWGG	2 cut(s)	319, 364
BstSCI	CCNGG	2 cut(s)	317, 362
BstSLI	GKGCMC	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	186, 349
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	132, 163
CciI	TCATGA	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	144, 366
CsiI	ACCWGGT	1 cut(s)	362
Csp6I	GTAC	3 cut(s)	61, 221, 283
CviAII	CATG	2 cut(s)	345, 381
CviJI	RGCY	4 cut(s)	134, 298, 311, 336
CviKI_1	RGCY	4 cut(s)	134, 298, 311, 336
CviQI	GTAC	3 cut(s)	61, 221, 283
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	144, 366
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	317, 362
FaeI	CATG	2 cut(s)	348, 384
FaiI	YATR	7 cut(s)	24, 30, 53, 71, 112, 346, 382
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	2 cut(s)	344, 380
FokI	GGATG	1 cut(s)	361
FspBI	CTAG	1 cut(s)	131
Hin1II	CATG	2 cut(s)	348, 384
HinfI	GANTC	3 cut(s)	172, 245, 254
HphI	GGTGA	4 cut(s)	89, 106, 307, 352
Hpy166II	GTNNAC	2 cut(s)	57, 80
Hpy188I	TCNGA	2 cut(s)	244, 250
Hpy188III	TCNNGA	2 cut(s)	176, 381
Hpy8I	GTNNAC	2 cut(s)	57, 80
HpyAV	CCTTC	2 cut(s)	309, 346
HpyCH4III	ACNGT	2 cut(s)	100, 232
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	57, 114, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	348, 384
KpnI	GGTACC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	49, 189, 304, 331, 349, 376
MabI	ACCWGGT	1 cut(s)	362
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	94, 232
MboII	GAAGA	5 cut(s)	50, 191, 206, 221, 349
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	3 cut(s)	13, 19, 42
MlyI	GAGTC	2 cut(s)	248, 254
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	190, 199, 211
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	4 cut(s)	18, 47, 290, 305
MslI	CAYNNNNRTG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	319, 364
MvaI	CCWGG	2 cut(s)	319, 364
MwoI	GCNNNNNNNGC	1 cut(s)	333
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	348, 384
NlaIV	GGNNCC	2 cut(s)	222, 368
NmuCI	GTSAC	2 cut(s)	94, 232
PagI	TCATGA	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	172
PflFI	GACNNNGTC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	248, 253
PpsI	GAGTC	2 cut(s)	248, 253
Ppu21I	YACGTR	1 cut(s)	60
PpuMI	RGGWCCY	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	317, 362
PspGI	CCWGG	2 cut(s)	317, 362
PspN4I	GGNNCC	2 cut(s)	222, 368
PspPI	GGNCC	2 cut(s)	144, 366
PspPPI	RGGWCCY	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	238
RsaI	GTAC	3 cut(s)	62, 222, 284
RsaNI	GTAC	3 cut(s)	61, 221, 283
RseI	CAYNNNNRTG	1 cut(s)	379
SaqAI	TTAA	4 cut(s)	18, 47, 290, 305
Sau96I	GGNCC	2 cut(s)	144, 366
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	2 cut(s)	248, 254
ScrFI	CCNGG	2 cut(s)	319, 364
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	6 cut(s)	62, 96, 222, 338, 357, 368
SexAI	ACCWGGT	1 cut(s)	362
SinI	GGWCC	2 cut(s)	144, 366
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	3 cut(s)	13, 19, 42
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	317, 362
TaaI	ACNGT	2 cut(s)	100, 232
TaiI	ACGT	1 cut(s)	62
TasI	AATT	3 cut(s)	13, 19, 42
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	4 cut(s)	18, 47, 290, 305
Tru9I	TTAA	4 cut(s)	18, 47, 290, 305
TseFI	GTSAC	2 cut(s)	94, 232
Tsp45I	GTSAC	2 cut(s)	94, 232
TspDTI	ATGAA	4 cut(s)	26, 51, 363, 365
TspGWI	ACGGA	1 cut(s)	216
Tth111I	GACNNNGTC	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	144, 366
XapI	RAATTY	2 cut(s)	13, 42
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	131
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.