Rh1DG111100

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
20434757 .. 20435198
442 bp
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UTR
Exon/CDS
Intron
Rh1DG111100.1

Sequence Viewer

Length: 198 bp
ATGTCGGAGTCAGACGACTCAACACCACCGATTGCAAAAAGAAAGTATTTATTAAGACAGCCTTCTTTAAAGGCTCTCAGCAGGATTCGCTCTTTGAGCTTGAGAGCATGGAAGAAGGTCTTCACGAGGGGTCAGCATGAACATGTGCTGCTTATTCGATTAGTAACTACTATTTATAACCCAGACAGCCAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.55

Weight (kDa)

10.64

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 142
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 119
BauI CACGAG 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 135
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 90
BssSI CACGAG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 87, 96
BstNSI RCATGY 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 112
CviAII CATG 3 cut(s) 108, 137, 143
CviJI RGCY 4 cut(s) 61, 74, 99, 189
CviKI_1 RGCY 4 cut(s) 61, 74, 99, 189
DdeI CTNAG 1 cut(s) 77
DraI TTTAAA 1 cut(s) 69
FaeI CATG 3 cut(s) 111, 140, 146
FaiI YATR 4 cut(s) 109, 138, 144, 177
FalI AAGNNNNNCTT 4 cut(s) 46, 78, 104, 136
FatI CATG 3 cut(s) 107, 136, 142
Fnu4HI GCNGC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
Hin1II CATG 3 cut(s) 111, 140, 146
HinfI GANTC 3 cut(s) 8, 17, 85
Hpy188I TCNGA 2 cut(s) 7, 13
Hpy188III TCNNGA 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 72, 109
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 96
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 3 cut(s) 111, 140, 146
LpnPI CCDG 1 cut(s) 67
Lsp1109I GCAGC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 2 cut(s) 112, 124
MlyI GAGTC 2 cut(s) 11, 17
MnlI CCTC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 2 cut(s) 53, 68
MslI CAYNNNNRTG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 87, 96
NlaIII CATG 3 cut(s) 111, 140, 146
NspI RCATGY 1 cut(s) 146
PciI ACATGT 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 2 cut(s) 11, 16
PpsI GAGTC 2 cut(s) 11, 16
PscI ACATGT 1 cut(s) 142
PsiI TTATAA 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 53, 68
SatI GCNGC 1 cut(s) 149
SchI GAGTC 2 cut(s) 11, 17
SetI ASST 3 cut(s) 101, 120, 197
SgeI CNNG 8 cut(s) 94, 112, 120, 136, 138, 149, 155, 194
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
TaqI TCGA 1 cut(s) 157
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 53, 68
Tru9I TTAA 2 cut(s) 53, 68
TseI GCWGC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 153
XceI RCATGY 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.