pycom16g17880

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0006800
Physical Location & Seq
Forward (+)
14254835 .. 14255208
374 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g17880.1

Sequence Viewer

Length: 309 bp
ATGATTTCTCTCCCCAGGGTTCGATCTTTGATCTGGAAAGCATGGACTCCATTGAAGAAAGTCTTCAATAGGTCCTATTCATTACCCATAACTCTTTTTTCATCTTCCCTTTCCTTCGTTCTCATTCTCCCTCTTAATCTTCCTCAGAATCATTGCAGCAGCAAATTCACCGCCGCCACCGCTGATACGATGTTAAGAGAGAGGGATCAAATGTTGTATTTTAAGCTTTGCCAGCCACTTACTTGCTCTCTCCTCTTCACTAGATTTAGCGAGGAACCGTTCACAATACTAAGTTTTTCGTTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

9.51

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 171, 174, 180
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 164
AgsI TTSAA 2 cut(s) 55, 67
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 156, 159
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 168, 171
BciT130I CCWGG 1 cut(s) 16
BfaI CTAG 1 cut(s) 261
BisI GCNGC 3 cut(s) 157, 160, 174
BlsI GCNGC 3 cut(s) 158, 161, 175
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 14, 15
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 14, 15
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 168, 171
Bsp143I GATC 3 cut(s) 23, 30, 205
BspACI CCGC 3 cut(s) 171, 174, 180
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 14, 15
BssMI GATC 3 cut(s) 23, 30, 205
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 144, 290
BstKTI GATC 3 cut(s) 26, 33, 208
BstMBI GATC 3 cut(s) 23, 30, 205
BstMWI GCNNNNNNNGC 2 cut(s) 179, 232
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 168, 171
BstV2I GAAGAC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 72
CviAII CATG 1 cut(s) 42
CviJI RGCY 2 cut(s) 226, 235
CviKI_1 RGCY 2 cut(s) 226, 235
DdeI CTNAG 2 cut(s) 144, 290
DpnI GATC 3 cut(s) 25, 32, 207
DpnII GATC 3 cut(s) 23, 30, 205
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 1 cut(s) 45
FaiI YATR 2 cut(s) 43, 89
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 3 cut(s) 157, 160, 174
Fsp4HI GCNGC 3 cut(s) 157, 160, 174
FspBI CTAG 1 cut(s) 261
GluI GCNGC 3 cut(s) 157, 160, 174
Hin1II CATG 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 46, 148
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 232
HpyF3I CTNAG 2 cut(s) 144, 290
Hsp92II CATG 1 cut(s) 45
Kzo9I GATC 3 cut(s) 23, 30, 205
LpnPI CCDG 3 cut(s) 19, 28, 245
Lsp1109I GCAGC 2 cut(s) 168, 171
MaeI CTAG 1 cut(s) 261
MalI GATC 3 cut(s) 25, 32, 207
MboI GATC 3 cut(s) 23, 30, 205
MboII GAAGA 5 cut(s) 55, 67, 96, 131, 247
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 5 cut(s) 141, 153, 195, 263, 265
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 3 cut(s) 135, 194, 222
MspA1I CMGCKG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 179, 232
NdeII GATC 3 cut(s) 23, 30, 205
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 276
PasI CCCWGGG 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 3 cut(s) 158, 161, 175
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 72
PspPPI RGGWCCY 1 cut(s) 72
SaqAI TTAA 3 cut(s) 135, 194, 222
SatI GCNGC 3 cut(s) 157, 160, 174
Sau3AI GATC 3 cut(s) 23, 30, 205
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 16
SetI ASST 2 cut(s) 74, 228
SgeI CNNG 8 cut(s) 27, 28, 46, 54, 244, 255, 273, 283
SinI GGWCC 1 cut(s) 72
Sse9I AATT 1 cut(s) 164
SsiI CCGC 3 cut(s) 171, 174, 180
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 164
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 3 cut(s) 135, 194, 222
Tru9I TTAA 3 cut(s) 135, 194, 222
TseI GCWGC 2 cut(s) 156, 159
TspDTI ATGAA 2 cut(s) 69, 90
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.