Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006800

Physical Location & Seq

Genomic Coordinates Reverse (-)

29841764 .. 29844305

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G320200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCGATATGCAAATTGTTCTGGCTAAGGCTTGCAAAAATGTAGAGGCGCAGTATGTGGAGATGATGGTTCCTCTCTATTCTCATGGATGTGAGAAGAAAGTCAAGAAGACCCTCTCCCATCTCAAAGGGATATACTCGGTGAAGGTGGATTACGACCAACAAAAGGTGACAGTGTGGGGAATATGCAACAAATACGATGTGCTTGCAACCGTGAGGAGCAAGAGAAAGGACGCCTGTTTTTGGAACCCCCAAGACAACGACATTGCCTTAGAATTACAATCGCAGCCTCCCTCAGACTCAAGCTCTCCTCCAATTTCATCAGCTTCGAGATACGCAAACTCTTCTTTAGCTCTGATCAGGGTTCGCTCTCTAAGCTTAAAATTGAAAGCATGGAAGAAAGTCTTCACTAGATCCTACTCGTTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

144

Amino Acids

16.16

Weight (kDa)

9.54

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27590 AT4G27590
fragaria_vesca	FvH4_7g33050
malus_domestica	MD01G1229600.v1.1 MD07G1301600.v1.1
prunus_persica	Prupe.2G320200_v2.0.a1
pyrus_communis	pycom01g23770 pycom07g27430 pycom16g17880
rosa_chinensis	RchiOBHm_Chr1g0383061
rosa_multiflora	Rmu_sc0000634.1_g000005 Rmu_sc0002030.1_g000014
rosa_roxburghii	Rroxscaffold_4G00277650 Rroxscaffold_7G00192580
rosa_rugosa	Rorug01G0438000
rosa_samantha	Rh1AG463700 Rh1BG420900 Rh1CG434400 Rh1DG111000 Rh1DG111100 Rh1DG453500 Rh6CG215000 Rh6DG206100
rosa_wichuraiana	Rw1G008470 Rw1G040850 Rw6G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	166, 243
AgsI	TTSAA	1 cut(s)	388
AluBI	AGCT	4 cut(s)	306, 326, 353, 378
AluI	AGCT	4 cut(s)	306, 326, 353, 378
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	154, 181
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
BbsI	GAAGAC	2 cut(s)	116, 397
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	61, 129
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BclI	TGATCA	1 cut(s)	357
BfaI	CTAG	1 cut(s)	411
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	72, 248
BpiI	GAAGAC	2 cut(s)	116, 397
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 243
Bse3DI	GCAATG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	166, 243
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	232, 300
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	166, 243
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	357, 413
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	72, 248
BspPI	GGATC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	264
BssMI	GATC	2 cut(s)	357, 413
BssNI	GRCGYC	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	175, 214
Bst6I	CTCTTC	1 cut(s)	349
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	34, 207
BstDEI	CTNAG	4 cut(s)	27, 271, 295, 374
BstF5I	GGATG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	360, 416
BstMBI	GATC	2 cut(s)	357, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	2 cut(s)	116, 397
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	34, 207
CfoI	GCGC	1 cut(s)	52
CseI	GACGC	1 cut(s)	242
CviAII	CATG	2 cut(s)	86, 393
CviJI	RGCY	8 cut(s)	5, 26, 32, 289, 306, 326, 353, 378
CviKI_1	RGCY	8 cut(s)	5, 26, 32, 289, 306, 326, 353, 378
DdeI	CTNAG	4 cut(s)	27, 271, 295, 374
DpnI	GATC	2 cut(s)	359, 415
DpnII	GATC	2 cut(s)	357, 413
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
FaeI	CATG	2 cut(s)	89, 396
FaiI	YATR	6 cut(s)	11, 57, 87, 136, 187, 394
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	2 cut(s)	85, 392
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	89, 396
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	2 cut(s)	154, 181
Hpy188I	TCNGA	2 cut(s)	298, 357
Hpy188III	TCNNGA	2 cut(s)	106, 330
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	175, 214
HpyCH4V	TGCA	4 cut(s)	13, 36, 189, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	4 cut(s)	27, 271, 295, 374
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	89, 396
HspAI	GCGC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	357, 413
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	3 cut(s)	8, 250, 346
Lsp1109I	GCAGC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	169, 423
MalI	GATC	2 cut(s)	359, 415
MboI	GATC	2 cut(s)	357, 413
MboII	GAAGA	5 cut(s)	109, 121, 336, 397, 409
MflI	RGATCY	1 cut(s)	413
MluCI	AATT	4 cut(s)	15, 275, 315, 383
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	7 cut(s)	40, 84, 125, 210, 300, 304, 321
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	375
NdeII	GATC	2 cut(s)	357, 413
NlaIII	CATG	2 cut(s)	89, 396
NlaIV	GGNNCC	2 cut(s)	72, 248
NmuCI	GTSAC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	72, 248
PsuI	RGATCY	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	2 cut(s)	357, 413
SchI	GAGTC	1 cut(s)	293
SetI	ASST	6 cut(s)	150, 171, 308, 328, 355, 380
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	4 cut(s)	15, 275, 315, 383
SspMI	CTAG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	175, 214
TaqI	TCGA	1 cut(s)	329
TasI	AATT	4 cut(s)	15, 275, 315, 383
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.