Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012661

Physical Location & Seq

Genomic Coordinates Reverse (-)

28534692 .. 28535537

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1132200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTTGAATGTTATTACTTTTTGGTTGAGAAGTATCTGTCTGACTTTCAAAATATTGGGTTTTTACATTGCTTCCTCTCTGGATTTGTAGAAGCCAATCAAGAAATTATAATGCAGGAAGGTGGGATTAGTTTGTTAGTAACAACATCCACTGAAGGTGATGATGCTCAAACCCTACGCATGGTTGCTGGAGCTATTGCTAATTTATGGGGCGATGATAAGCTACAAATGAAGCTAAGGTCTGAAGGTGGTATTAAGGCGTTGCTAGGACTTGTGAGGTGCGGGCATCCTAATGTTCTTTCCCAAATGGCACGTGGAATGGTTAACTTTGCAAAATATGAATCACGACATGTACTCAAGGTAAGAGCCTTTGTTAGAAATATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

130

Amino Acids

14.48

Weight (kDa)

6.82

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	32 - 118	3.5e-06	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012661)

Species	Orthologous Gene IDs
malus_domestica	MD00G1132200.v1.1 MD04G1087800.v1.1 MD04G1141600.v1.1
pyrus_communis	pycom07g11320 pycom11g14700 pycom11g14710
rosa_chinensis	RchiOBHm_Chr2g0129331 RchiOBHm_Chr7g0200981
rosa_laevigata	RLG00000003711
rosa_roxburghii	Rroxscaffold_2G00107180 Rroxscaffold_3G00255790 Rroxscaffold_7G00189740
rosa_rugosa	Rorug05G0329400 Rorug07G0061500
rosa_samantha	Rh7BG189900 Rh7BG447100 Rh7DG191500 Rh7DG192500
rosa_wichuraiana	Rw0G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AciI	CCGC	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	174, 264
AcvI	CACGTG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	8, 50
AluBI	AGCT	3 cut(s)	194, 223, 235
AluI	AGCT	3 cut(s)	194, 223, 235
AsuHPI	GGTGA	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	314
BfaI	CTAG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	154, 295
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	146, 286
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	181
BspACI	CCGC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	146, 286
BstNSI	RCATGY	1 cut(s)	353
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	146, 286
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	3 cut(s)	181, 350, 387
CviJI	RGCY	5 cut(s)	95, 194, 223, 235, 368
CviKI_1	RGCY	5 cut(s)	95, 194, 223, 235, 368
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	174, 264
Eco72I	CACGTG	1 cut(s)	314
FaeI	CATG	3 cut(s)	184, 353, 390
FaiI	YATR	6 cut(s)	110, 182, 208, 339, 351, 388
FatI	CATG	3 cut(s)	180, 349, 386
FauI	CCCGC	1 cut(s)	275
FokI	GGATG	2 cut(s)	133, 273
FspBI	CTAG	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	210
Hin1II	CATG	3 cut(s)	184, 353, 390
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	341
HpaI	GTTAAC	1 cut(s)	325
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	43, 244
Hpy188III	TCNNGA	3 cut(s)	81, 101, 345
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	113, 149, 239
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	115, 332
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	3 cut(s)	184, 353, 390
KspAI	GTTAAC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	3 cut(s)	66, 101, 174
LweI	GCATC	2 cut(s)	154, 295
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	139
MluCI	AATT	2 cut(s)	105, 202
MnlI	CCTC	2 cut(s)	86, 270
MseI	TTAA	2 cut(s)	255, 324
MslI	CAYNNNNRTG	1 cut(s)	291
NlaIII	CATG	3 cut(s)	184, 353, 390
NspI	RCATGY	1 cut(s)	353
PciI	ACATGT	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	341
PmaCI	CACGTG	1 cut(s)	314
PmlI	CACGTG	1 cut(s)	314
Ppu21I	YACGTR	1 cut(s)	314
PscI	ACATGT	1 cut(s)	349
PsiI	TTATAA	1 cut(s)	110
PspCI	CACGTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	255, 324
SfaNI	GCATC	2 cut(s)	154, 295
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	105, 202
SsiI	CCGC	1 cut(s)	282
SspI	AATATT	2 cut(s)	55, 382
SspMI	CTAG	1 cut(s)	266
TaiI	ACGT	1 cut(s)	316
TasI	AATT	2 cut(s)	105, 202
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	255, 324
Tru9I	TTAA	2 cut(s)	255, 324
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	245, 354
TspRI	CASTG	1 cut(s)	157
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.