Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012661

Physical Location & Seq

Genomic Coordinates Reverse (-)

11976787 .. 11978091

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g11320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTTCTTAGAAGCTTTGAAGATGAAACCGTTCAAAGAGTGGCAGCCTTTGCCATTGCGAATCTTGCAATGAATGAAGCTAATCAAGAAATTATACTGGAGCAAGGTGGGATTAGTTTGTTAGCAACGACAGCTGCTGATGCTGATGATGCTCAAACCCTACGCATGATTGCTGGAGCTATTGCTAATTTATGCGGCAATGATAAGCTACAAATGAAGCTAAGGTTCGAAGGTGGTATCAAGGCGTTGCTAGGAATTGTGAGGTGTGGGCATCCTGATGTTCTTTCCCAAGTGGTGCGTGGAATTGCTAACTTTGCAAAATGCGAGTCACGAGCATGTACTCAAGGGATAAGGAATGGAAGATCTTTCTTGATAGAAGATGGAGCACTTCCATGGATTGTACAAAATGCTAATGACGAGGCTGCACCAATCCGGCGCCACATTGAGCTTGCACTCTATCACTTAGCACAACATGAGGTGAATGCAAAGGACATGATTAGTGGAGGTGCCCTCTGGGAGCTAGTTCGTATCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

179

Amino Acids

19.32

Weight (kDa)

5.56

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012661)

Species	Orthologous Gene IDs
malus_domestica	MD00G1132200.v1.1 MD04G1087800.v1.1 MD04G1141600.v1.1
pyrus_communis	pycom07g11320 pycom11g14700 pycom11g14710
rosa_chinensis	RchiOBHm_Chr2g0129331 RchiOBHm_Chr7g0200981
rosa_laevigata	RLG00000003711
rosa_roxburghii	Rroxscaffold_2G00107180 Rroxscaffold_3G00255790 Rroxscaffold_7G00189740
rosa_rugosa	Rorug05G0329400 Rorug07G0061500
rosa_samantha	Rh7BG189900 Rh7BG447100 Rh7DG191500 Rh7DG192500
rosa_wichuraiana	Rw0G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	435, 506
AciI	CCGC	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	2 cut(s)	340, 402
AgsI	TTSAA	2 cut(s)	20, 35
AluBI	AGCT	8 cut(s)	15, 80, 134, 179, 208, 220, 448, 520
AluI	AGCT	8 cut(s)	15, 80, 134, 179, 208, 220, 448, 520
Alw21I	GWGCWC	1 cut(s)	388
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	44, 134, 422
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	438
AsuHPI	GGTGA	1 cut(s)	490
AsuII	TTCGAA	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	511
BanI	GGYRCC	2 cut(s)	435, 506
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	56, 121, 409
BccI	CCATC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	251, 521
BfoI	RGCGCY	1 cut(s)	439
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	4 cut(s)	45, 135, 196, 423
BlsI	GCNGC	4 cut(s)	46, 136, 197, 424
BmiI	GGNNCC	2 cut(s)	437, 508
BmsI	GCATC	3 cut(s)	130, 139, 280
BplI	GAGNNNNNCTC	2 cut(s)	495, 527
BpmI	CTGGAG	2 cut(s)	119, 195
Bpu10I	CCTNAGC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	102
Bse3DI	GCAATG	3 cut(s)	54, 75, 205
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	3 cut(s)	54, 75, 205
BseNI	ACTGG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	3 cut(s)	56, 121, 409
BsgI	GTGCAG	1 cut(s)	408
BshNI	GGYRCC	2 cut(s)	435, 506
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	487
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	388, 511
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	362
Bsp19I	CCATGG	1 cut(s)	392
BspACI	CCGC	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	437, 508
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	2 cut(s)	435, 506
BsrDI	GCAATG	3 cut(s)	54, 75, 205
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	1 cut(s)	362
BssNI	GRCGYC	1 cut(s)	436
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	8, 221, 463
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 65, 131, 140, 149, 314
BstNSI	RCATGY	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	3 cut(s)	56, 121, 409
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	450
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	339, 401
CviAII	CATG	5 cut(s)	166, 336, 393, 473, 493
CviQI	GTAC	2 cut(s)	339, 401
DdeI	CTNAG	3 cut(s)	8, 221, 463
DinI	GGCGCC	1 cut(s)	437
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	392
EgeI	GGCGCC	1 cut(s)	437
EheI	GGCGCC	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	5 cut(s)	169, 339, 396, 476, 496
FaiI	YATR	7 cut(s)	95, 167, 193, 337, 394, 474, 494
FatI	CATG	5 cut(s)	165, 335, 392, 472, 492
Fnu4HI	GCNGC	4 cut(s)	45, 135, 196, 423
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	45, 135, 196, 423
FspBI	CTAG	2 cut(s)	251, 521
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	4 cut(s)	45, 135, 196, 423
GsuI	CTGGAG	2 cut(s)	119, 195
HaeII	RGCGCY	1 cut(s)	439
HapII	CCGG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	438
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	169, 339, 396, 476, 496
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	2 cut(s)	61, 326
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	1 cut(s)	490
Hpy188III	TCNNGA	5 cut(s)	86, 275, 330, 370, 534
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	5 cut(s)	68, 317, 425, 452, 485
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 65, 131, 140, 149, 314
HpyF3I	CTNAG	3 cut(s)	8, 221, 463
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	5 cut(s)	169, 339, 396, 476, 496
HspAI	GCGC	1 cut(s)	436
KasI	GGCGCC	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	362
LmnI	GCTCC	4 cut(s)	100, 176, 383, 517
LpnPI	CCDG	5 cut(s)	83, 159, 288, 446, 499
Lsp1109I	GCAGC	3 cut(s)	56, 121, 409
LweI	GCATC	3 cut(s)	130, 139, 280
MaeI	CTAG	2 cut(s)	251, 521
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	3 cut(s)	32, 372, 389
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	388, 511
MluCI	AATT	4 cut(s)	90, 187, 255, 303
Mly113I	GGCGCC	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	5 cut(s)	255, 412, 469, 497, 521
MroXI	GAANNNNTTC	1 cut(s)	30
MslI	CAYNNNNRTG	3 cut(s)	276, 334, 391
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	487
MwoI	GCNNNNNNNGC	6 cut(s)	50, 65, 131, 140, 149, 314
NarI	GGCGCC	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	1 cut(s)	362
NlaIII	CATG	5 cut(s)	169, 339, 396, 476, 496
NlaIV	GGNNCC	2 cut(s)	437, 508
NmuCI	GTSAC	1 cut(s)	327
NspI	RCATGY	1 cut(s)	339
NspV	TTCGAA	1 cut(s)	228
PctI	GAATGC	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	46, 136, 197, 424
PleI	GAGTC	1 cut(s)	334
PluTI	GGCGCC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	437, 508
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	340, 402
RsaNI	GTAC	2 cut(s)	339, 401
RseI	CAYNNNNRTG	3 cut(s)	276, 334, 391
SatI	GCNGC	4 cut(s)	45, 135, 196, 423
Sau3AI	GATC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	388, 511
SfaNI	GCATC	3 cut(s)	130, 139, 280
SfoI	GGCGCC	1 cut(s)	437
SfuI	TTCGAA	1 cut(s)	228
SmiMI	CAYNNNNRTG	3 cut(s)	276, 334, 391
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	4 cut(s)	90, 187, 255, 303
SsiI	CCGC	1 cut(s)	195
SspDI	GGCGCC	1 cut(s)	435
SspMI	CTAG	2 cut(s)	251, 521
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	90, 187, 255, 303
TatI	WGTACW	2 cut(s)	338, 400
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	3 cut(s)	44, 134, 422
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	4 cut(s)	39, 86, 90, 230
XceI	RCATGY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	2 cut(s)	251, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.