Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012661

Physical Location & Seq

Genomic Coordinates Forward (+)

15364359 .. 15365587

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG189900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAGCTGACAATGAATCAAGGGGTACTTAGTTTGTTATCTATCACAGCAGCCAATGGTGAAGATCCAGAAACCCTTCGAATGGTTGCTGGAGCCATTGCTAATCTTTGCAGAAACGATAAATTACAGAGCAAGCTAAGGGCAGAAGGTGGCATTAAGGCATTGCTAGGAATGATCAGATGTGGGCATCCAGATGTTCTTGCACAAGTTGCTTGTGGGATTGCAAATTTCACAAAATTCGAGTCTAGGGCATCTACACAAGGGGGACCAAAAATGGAAGGTCTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

96

Amino Acids

10.15

Weight (kDa)

7.73

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012661)

Species	Orthologous Gene IDs
malus_domestica	MD00G1132200.v1.1 MD04G1087800.v1.1 MD04G1141600.v1.1
pyrus_communis	pycom07g11320 pycom11g14700 pycom11g14710
rosa_chinensis	RchiOBHm_Chr2g0129331 RchiOBHm_Chr7g0200981
rosa_laevigata	RLG00000003711
rosa_roxburghii	Rroxscaffold_2G00107180 Rroxscaffold_3G00255790 Rroxscaffold_7G00189740
rosa_rugosa	Rorug05G0329400 Rorug07G0061500
rosa_samantha	Rh7BG189900 Rh7BG447100 Rh7DG191500 Rh7DG192500
rosa_wichuraiana	Rw0G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	226, 236
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	7, 136
AluI	AGCT	2 cut(s)	7, 136
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	226, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	167, 246
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	94, 267
BmsI	GCATC	2 cut(s)	196, 260
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu14I	TTCGAA	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse3DI	GCAATG	2 cut(s)	96, 161
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	2 cut(s)	96, 161
BseXI	GCAGC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	64, 174
BspLI	GGNNCC	2 cut(s)	94, 267
BspPI	GGATC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	96, 161
BssMI	GATC	2 cut(s)	64, 174
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	29, 137
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	2 cut(s)	67, 177
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	64, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	26
CviJI	RGCY	4 cut(s)	7, 53, 95, 136
CviKI_1	RGCY	4 cut(s)	7, 53, 95, 136
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	29, 137
DpnI	GATC	2 cut(s)	66, 176
DpnII	GATC	2 cut(s)	64, 174
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	266
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	167, 246
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	111
HinfI	GANTC	2 cut(s)	16, 242
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	179, 290
Hpy188III	TCNNGA	2 cut(s)	68, 191
HpyAV	CCTTC	3 cut(s)	86, 140, 272
HpyCH4V	TGCA	3 cut(s)	111, 203, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	29, 137
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	64, 174
LmnI	GCTCC	2 cut(s)	4, 92
LpnPI	CCDG	3 cut(s)	75, 81, 204
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	196, 260
MaeI	CTAG	2 cut(s)	167, 246
MalI	GATC	2 cut(s)	66, 176
MboI	GATC	2 cut(s)	64, 174
MboII	GAAGA	2 cut(s)	74, 277
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	3 cut(s)	122, 226, 236
MlyI	GAGTC	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	2 cut(s)	64, 174
NlaIV	GGNNCC	2 cut(s)	94, 267
NspV	TTCGAA	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	94, 267
PspPI	GGNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	64, 174
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	251
SetI	ASST	4 cut(s)	9, 138, 151, 283
SfaNI	GCATC	2 cut(s)	196, 260
SfuI	TTCGAA	1 cut(s)	79
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	122, 226, 236
SspMI	CTAG	2 cut(s)	167, 246
TaqI	TCGA	2 cut(s)	79, 240
TasI	AATT	3 cut(s)	122, 226, 236
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	2 cut(s)	226, 236
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	167, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.