Rroxscaffold_7G00189740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012661
Physical Location & Seq
Reverse (-)
29557275 .. 29558147
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189740.1

Sequence Viewer

Length: 264 bp
ATGGGAGAGAAATCTGGTGCCCCCATCAATCTTGGGCCCCGGGCTGTCGCGCGAACACTGCCCATGGGCAAGGCCGCCCCGATTGCAGCCAAAAGGAGGACATGGAAACTAGGGCTGAATGGGTGGAGAATACGTGCATCCGAGTGGAATATTATGCGAACTGCAGCCAACCTATTACATGCGGAAGTGTCAAAAGCAAAATCTCTTACCCTTTGGGGAGCGAACCGAGCTGATTACATCGTGGCAAATTTGGGTTTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.48

Weight (kDa)

11.73

Isoelectric Point (pI)

26.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 2 cut(s) 50, 52
AciI CCGC 2 cut(s) 75, 182
AcsI RAATTY 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 2 cut(s) 35, 72
ApaI GGGCCC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 86, 164
ApoI RAATTY 1 cut(s) 247
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 35, 36
AsuC2I CCSGG 2 cut(s) 40, 41
AvaI CYCGRG 1 cut(s) 39
BaeGI GKGCMC 2 cut(s) 22, 39
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 98, 176
BccI CCATC 1 cut(s) 32
BcnI CCSGG 2 cut(s) 40, 41
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 75, 87, 165
BlsI GCNGC 3 cut(s) 76, 88, 166
Bme1390I CCNGG 2 cut(s) 40, 41
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 35, 36
BmiI GGNNCC 3 cut(s) 19, 37, 38
BmrFI CCNGG 2 cut(s) 40, 41
BmsI GCATC 1 cut(s) 146
BpuMI CCSGG 2 cut(s) 40, 41
BsaAI YACGTR 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 38, 39, 63
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 38, 39, 63
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 96
BseSI GKGCMC 2 cut(s) 22, 39
BseXI GCAGC 2 cut(s) 98, 176
Bsh1236I CGCG 2 cut(s) 50, 52
BshFI GGCC 2 cut(s) 37, 74
BshNI GGYRCC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 96
BsnI GGCC 2 cut(s) 37, 74
BsoBI CYCGRG 1 cut(s) 39
Bsp120I GGGCCC 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 22, 39
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 75, 182
BspANI GGCC 2 cut(s) 37, 74
BspFNI CGCG 2 cut(s) 50, 52
BspLI GGNNCC 3 cut(s) 19, 37, 38
BspMAI CTGCAG 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 38, 39, 63
BssT1I CCWWGG 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 2 cut(s) 50, 52
BstHHI GCGC 1 cut(s) 52
BstMWI GCNNNNNNNGC 3 cut(s) 58, 83, 227
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 38, 39
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 2 cut(s) 22, 39
BstUI CGCG 2 cut(s) 50, 52
BstV1I GCAGC 2 cut(s) 98, 176
BsuRI GGCC 2 cut(s) 37, 74
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 56
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 35, 36
Cfr9I CCCGGG 1 cut(s) 39
CviAII CATG 3 cut(s) 64, 102, 179
CviJI RGCY 7 cut(s) 37, 44, 74, 89, 115, 167, 230
CviKI_1 RGCY 7 cut(s) 37, 44, 74, 89, 115, 167, 230
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 67, 105, 182
FaiI YATR 4 cut(s) 65, 103, 155, 180
FatI CATG 3 cut(s) 63, 101, 178
Fnu4HI GCNGC 3 cut(s) 75, 87, 165
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 75, 87, 165
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 51
GluI GCNGC 3 cut(s) 75, 87, 165
HaeIII GGCC 2 cut(s) 37, 74
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 67, 105, 182
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HpaII CCGG 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 86, 137, 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 83, 227
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 3 cut(s) 67, 105, 182
HspAI GCGC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 1 cut(s) 53
Lsp1109I GCAGC 2 cut(s) 98, 176
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 22, 39
MluCI AATT 1 cut(s) 247
MnlI CCTC 2 cut(s) 90, 252
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 40, 41
MvnI CGCG 2 cut(s) 50, 52
MwoI GCNNNNNNNGC 3 cut(s) 58, 83, 227
NciI CCSGG 2 cut(s) 40, 41
NcoI CCATGG 1 cut(s) 63
NlaIII CATG 3 cut(s) 67, 105, 182
NlaIV GGNNCC 3 cut(s) 19, 37, 38
NspI RCATGY 1 cut(s) 182
PkrI GCNGC 3 cut(s) 76, 88, 166
Ppu21I YACGTR 1 cut(s) 134
PspN4I GGNNCC 3 cut(s) 19, 37, 38
PspOMI GGGCCC 1 cut(s) 35
PspPI GGNCC 2 cut(s) 35, 36
PstI CTGCAG 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 142
SatI GCNGC 3 cut(s) 75, 87, 165
Sau96I GGNCC 2 cut(s) 35, 36
ScrFI CCNGG 2 cut(s) 40, 41
SduI GDGCHC 2 cut(s) 22, 39
SetI ASST 4 cut(s) 136, 174, 232, 263
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 162
SmaI CCCGGG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 142
Sse9I AATT 1 cut(s) 247
SsiI CCGC 2 cut(s) 75, 182
SspI AATATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 38, 39
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 1 cut(s) 136
TasI AATT 1 cut(s) 247
TauI GCSGC 1 cut(s) 77
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 86, 164
TspMI CCCGGG 1 cut(s) 39
TspRI CASTG 1 cut(s) 63
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 39
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.