Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012661

Physical Location & Seq

Genomic Coordinates Reverse (-)

23051757 .. 23052808

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1141600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAAGGTGGGATTAGTTTGTTAGCTACGACAGCTACTGAAGCTGATGATGTTCAAACCCTACGCATGGTTGTTGGAGCTATTGCTAATTTATGCGGCAATGATAAGCTACAAATGAAGCTAAGGTCTGAAGGTGGTATTAAGGCGTTGCTAGGAATTGTGAGGTGTGGGCATCCTAATGTTCTTTCCCAAGTGGCACGTGGAATTGCTGACTTTGTAAAATGTGAATCACGAGCATGTACTCAAGGGATAAAGAATGGAAGATCTTTCTTGATAGAAGATGGTGCACTTCCATGGATTGTACAAAATGCTAATGATGAGGTTGTACCAATCCGGCGCCACATTGAGCTTGCACTCTGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

122

Amino Acids

12.99

Weight (kDa)

6.81

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012661)

Species	Orthologous Gene IDs
malus_domestica	MD00G1132200.v1.1 MD04G1087800.v1.1 MD04G1141600.v1.1
pyrus_communis	pycom07g11320 pycom11g14700 pycom11g14710
rosa_chinensis	RchiOBHm_Chr2g0129331 RchiOBHm_Chr7g0200981
rosa_laevigata	RLG00000003711
rosa_roxburghii	Rroxscaffold_2G00107180 Rroxscaffold_3G00255790 Rroxscaffold_7G00189740
rosa_rugosa	Rorug05G0329400 Rorug07G0061500
rosa_samantha	Rh7BG189900 Rh7BG447100 Rh7DG191500 Rh7DG192500
rosa_wichuraiana	Rw0G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AciI	CCGC	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	60, 150
AcvI	CACGTG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	337
AfaI	GTAC	3 cut(s)	241, 303, 327
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	7 cut(s)	26, 35, 44, 80, 109, 121, 349
AluI	AGCT	7 cut(s)	26, 35, 44, 80, 109, 121, 349
Alw21I	GWGCWC	1 cut(s)	289
Alw44I	GTGCAC	1 cut(s)	285
AlwNI	CAGNNNCTG	1 cut(s)	38
ApaLI	GTGCAC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	231
BbrPI	CACGTG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	340
BglII	AGATCT	1 cut(s)	263
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	338
BmsI	GCATC	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	263
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	263
BssNI	GRCGYC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	263
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 41
BstNSI	RCATGY	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	339
Csp6I	GTAC	3 cut(s)	240, 302, 326
CviAII	CATG	3 cut(s)	67, 237, 294
CviJI	RGCY	7 cut(s)	26, 35, 44, 80, 109, 121, 349
CviKI_1	RGCY	7 cut(s)	26, 35, 44, 80, 109, 121, 349
CviQI	GTAC	3 cut(s)	240, 302, 326
DdeI	CTNAG	1 cut(s)	122
DinI	GGCGCC	1 cut(s)	338
DpnI	GATC	1 cut(s)	265
DpnII	GATC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	60, 150
Eco72I	CACGTG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	293
EgeI	GGCGCC	1 cut(s)	338
EheI	GGCGCC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	3 cut(s)	70, 240, 297
FaiI	YATR	4 cut(s)	68, 94, 238, 295
FatI	CATG	3 cut(s)	66, 236, 293
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	340
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	3 cut(s)	70, 240, 297
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	231, 271
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	287, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 41
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	199
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	70, 240, 297
HspAI	GCGC	1 cut(s)	337
KasI	GGCGCC	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	1 cut(s)	347
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	1 cut(s)	265
MboI	GATC	1 cut(s)	263
MboII	GAAGA	2 cut(s)	273, 290
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	3 cut(s)	88, 156, 204
Mly113I	GGCGCC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	156, 313
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	3 cut(s)	177, 235, 292
MspI	CCGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	2 cut(s)	32, 41
NarI	GGCGCC	1 cut(s)	337
NcoI	CCATGG	1 cut(s)	293
NdeII	GATC	1 cut(s)	263
NlaIII	CATG	3 cut(s)	70, 240, 297
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	340
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	200
PspCI	CACGTG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	3 cut(s)	241, 303, 327
RsaNI	GTAC	3 cut(s)	240, 302, 326
RseI	CAYNNNNRTG	3 cut(s)	177, 235, 292
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	1 cut(s)	181
SfoI	GGCGCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	3 cut(s)	177, 235, 292
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	88, 156, 204
SsiI	CCGC	1 cut(s)	96
SspDI	GGCGCC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	293
TaiI	ACGT	1 cut(s)	202
TasI	AATT	3 cut(s)	88, 156, 204
TatI	WGTACW	2 cut(s)	239, 301
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	285
XceI	RCATGY	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.