Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012661

Physical Location & Seq

Genomic Coordinates Reverse (-)

13049807 .. 13060189

Gene Structure 10383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1087800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAATGAAGTCAATCAAGAAATTATAATGCAAGAATGTGGGATTAGTTTGTTAACAACGACAGCCGCTGAAGCTGATGATGCTCAAACCCTATGCATGATTGCTGGAGCTATTGCTAATTTATGCGGCAATGATAAGCTACAAATGAAGCTAAGGTCTGAAGGTGGTATTAAGGCGTTGCTAGGAATTGTGAGGTGTGGGAATCCTGATGTTCTTTCCCAAGTGGCACGTGGAATAGCTAACTTTGCAAAATGTGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

88

Amino Acids

9.16

Weight (kDa)

4.69

Isoelectric Point (pI)

25.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012661)

Species	Orthologous Gene IDs
malus_domestica	MD00G1132200.v1.1 MD04G1087800.v1.1 MD04G1141600.v1.1
pyrus_communis	pycom07g11320 pycom11g14700 pycom11g14710
rosa_chinensis	RchiOBHm_Chr2g0129331 RchiOBHm_Chr7g0200981
rosa_laevigata	RLG00000003711
rosa_roxburghii	Rroxscaffold_2G00107180 Rroxscaffold_3G00255790 Rroxscaffold_7G00189740
rosa_rugosa	Rorug05G0329400 Rorug07G0061500
rosa_samantha	Rh7BG189900 Rh7BG447100 Rh7DG191500 Rh7DG192500
rosa_wichuraiana	Rw0G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
AciI	CCGC	2 cut(s)	66, 126
AcuI	CTGAAG	2 cut(s)	90, 180
AcvI	CACGTG	1 cut(s)	230
AluBI	AGCT	5 cut(s)	74, 110, 139, 151, 239
AluI	AGCT	5 cut(s)	74, 110, 139, 151, 239
AlwNI	CAGNNNCTG	1 cut(s)	68
BbrPI	CACGTG	1 cut(s)	230
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	66, 127
BlsI	GCNGC	2 cut(s)	67, 128
BmsI	GCATC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	136
BspACI	CCGC	2 cut(s)	66, 126
BspHI	TCATGA	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 80, 245
CaiI	CAGNNNCTG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	260
CviAII	CATG	2 cut(s)	97, 261
CviJI	RGCY	6 cut(s)	65, 74, 110, 139, 151, 239
CviKI_1	RGCY	6 cut(s)	65, 74, 110, 139, 151, 239
DdeI	CTNAG	1 cut(s)	152
Eco57I	CTGAAG	2 cut(s)	90, 180
Eco72I	CACGTG	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	98
FaeI	CATG	2 cut(s)	100, 264
FaiI	YATR	5 cut(s)	26, 94, 98, 124, 262
FatI	CATG	2 cut(s)	96, 260
Fnu4HI	GCNGC	2 cut(s)	66, 127
Fsp4HI	GCNGC	2 cut(s)	66, 127
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	2 cut(s)	66, 127
GsuI	CTGGAG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	100, 264
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	202, 257
HpaI	GTTAAC	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	3 cut(s)	17, 206, 261
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	31, 96, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 80, 245
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	100, 264
KspAI	GTTAAC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	2 cut(s)	90, 219
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	229
MluCI	AATT	3 cut(s)	21, 118, 186
MnlI	CCTC	1 cut(s)	186
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	2 cut(s)	53, 171
MspA1I	CMGCKG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	71, 80, 245
NlaIII	CATG	2 cut(s)	100, 264
NsiI	ATGCAT	1 cut(s)	98
PagI	TCATGA	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	202, 257
PkrI	GCNGC	2 cut(s)	67, 128
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	26
PspCI	CACGTG	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	53, 171
SatI	GCNGC	2 cut(s)	66, 127
SetI	ASST	9 cut(s)	76, 112, 141, 153, 158, 166, 197, 232, 241
SfaNI	GCATC	1 cut(s)	70
SgeI	CNNG	9 cut(s)	29, 44, 109, 117, 194, 218, 233, 240, 242
Sse9I	AATT	3 cut(s)	21, 118, 186
SsiI	CCGC	2 cut(s)	66, 126
SspMI	CTAG	1 cut(s)	182
TaiI	ACGT	1 cut(s)	232
TasI	AATT	3 cut(s)	21, 118, 186
TauI	GCSGC	2 cut(s)	68, 129
TfiI	GAWTC	2 cut(s)	202, 257
Tru1I	TTAA	2 cut(s)	53, 171
Tru9I	TTAA	2 cut(s)	53, 171
TspDTI	ATGAA	3 cut(s)	17, 21, 161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.