Rorug05G0329400
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012661
Physical Location & Seq
Forward (+)
39679257 .. 39680396
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0329400.1

Sequence Viewer

Length: 1140 bp
ATGGAGGGTGGTCTTATGCTTCTTCCAGGCCAAAGGTTTTGCCCCATGGAAGATGAACTACTCATGCTCTACCTTAAGCCTAAGGTGAACGGGATGGAAGTGCCCGGCAACGAAGACGTTATCTGCGAGTTGGATCTTTACGGTGACAACGATCCTTGGAAGATATGGGAAAGATTCGAAGCAAGAAAGGCCAACGACTTGAGGAGGAACAAAGATCTCTACTTCTTCACCCAAAAGAAGAAAAAGACTGCAAAAAGCTCACGTATAAGCCGAACTGTTGGGAGTGGCGGTACTTGGAAAGGCCAGAATGCAGCCAAGGAGATCTATCTTCTTGATGATAATCAGCAGCCATCGACTACTCTTCTTGGTTTCAAGAAAACCTACACCTATAAGAACAAGGGGTCTGTGCATGATGGTCGCTGGATCATGTATGAGTTTGAACTTGATAAGTCACAACTCGTGCACAAGAAACAAGTAAACAAGAATGACTATGTTCTTTGTTTACTTAGGAAAAACGATGTACTGCCGGAAAGAAAGAGAAAAAGGCAAGAAGAAGAGGAGATGCTTGGAGACTATGTCGAGGACCATGACGGAGATAACACAGATCCTGAATCGGTTACTGAGGAGCCGCAAGAGAAACGGCAACGTCTTCTACCATCATTAGAATCTGAACAAGAAGCAGTACAAGATGAACCACTTCTCTTGCAAGTGGATGAGAATATGGAACTGCAGCAACTGGAGTTGGCTGAACTAGAAAAGTGGTTTCAAGTGGAATTTGAAGCAAGACCTACAACACTAGAGGCTGAACAAGTTTCCTTGCCTGTTGATGAGAATTCAGGACTGCAACAATTGGAAGCTGAACCTCAACTAGGAGGAGAAAATCTGGAGCAGCAACTTGATGCACCATCATTTGCAGCTGATGAGATAATGAGTGGCTTTCAGTTTCACCCAGATGAAAATCCGGTGAAGCAAATGGGGGCTGAACCCAATGTGTATGGAGGGAACTTGAGTGACGCTATGGATGGTGAAAACTGGCCTATGTTTTTTGTGGAAGAGCTAATGAATGATGAGCAGCCAAATACCATGGAAATGGGAGAGTGGAATGCCACTTTTTCTGATTTTGAGTACTTAGCATTTTAG

Protein Analysis

379

Amino Acids

43.88

Weight (kDa)

4.46

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 148 8.2e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 288, 629
AclWI GGATC 4 cut(s) 141, 146, 431, 599
AcsI RAATTY 2 cut(s) 773, 832
AfaI GTAC 4 cut(s) 292, 522, 684, 1127
AfiI CCNNNNNNNGG 1 cut(s) 869
AflII CTTAAG 1 cut(s) 74
AgsI TTSAA 4 cut(s) 373, 440, 767, 779
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 4 cut(s) 258, 857, 917, 1057
AluI AGCT 4 cut(s) 258, 857, 917, 1057
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 564
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 4 cut(s) 141, 146, 431, 599
AlwNI CAGNNNCTG 2 cut(s) 608, 736
AoxI GGCC 4 cut(s) 28, 189, 301, 1034
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 6 cut(s) 311, 346, 730, 889, 914, 1072
ApoI RAATTY 2 cut(s) 773, 832
Asp700I GAANNNNTTC 1 cut(s) 696
AspS9I GGNCC 1 cut(s) 583
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 6 cut(s) 97, 155, 220, 938, 976, 1037
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 583
AxyI CCTNAGG 1 cut(s) 81
BaeGI GKGCMC 2 cut(s) 105, 465
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 2 cut(s) 120, 641
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 6 cut(s) 323, 358, 742, 901, 926, 1084
BccI CCATC 6 cut(s) 88, 358, 407, 664, 913, 1016
BceAI ACGGC 1 cut(s) 656
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 27
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 3 cut(s) 752, 797, 869
BfmI CTRYAG 1 cut(s) 728
BfrI CTTAAG 1 cut(s) 74
BglII AGATCT 2 cut(s) 214, 321
BisI GCNGC 7 cut(s) 312, 347, 629, 731, 890, 915, 1073
BlsI GCNGC 7 cut(s) 313, 348, 630, 732, 891, 916, 1074
BmcAI AGTACT 1 cut(s) 1127
Bme1390I CCNGG 2 cut(s) 27, 105
Bme18I GGWCC 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 583
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 2 cut(s) 27, 105
BmsI GCATC 2 cut(s) 552, 889
BpiI GAAGAC 2 cut(s) 120, 641
BpmI CTGGAG 2 cut(s) 758, 905
Bpu14I TTCGAA 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 220, 1027
BpuMI CCSGG 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 263
BsaBI GATNNNNATC 2 cut(s) 339, 957
BsaJI CCNNGG 4 cut(s) 45, 155, 315, 1083
BsaWI WCCGGW 1 cut(s) 961
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 869
Bse1I ACTGG 2 cut(s) 741, 1037
Bse21I CCTNAGG 1 cut(s) 81
Bse8I GATNNNNATC 2 cut(s) 339, 957
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 45, 155, 315, 1083
BseGI GGATG 3 cut(s) 99, 718, 1027
BseJI GATNNNNATC 2 cut(s) 339, 957
BseLI CCNNNNNNNGG 1 cut(s) 869
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 2 cut(s) 741, 1037
BseRI GAGGAG 4 cut(s) 217, 572, 638, 888
BseSI GKGCMC 2 cut(s) 105, 465
BseXI GCAGC 6 cut(s) 323, 358, 742, 901, 926, 1084
BshFI GGCC 4 cut(s) 30, 191, 303, 1036
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 3 cut(s) 105, 527, 962
BslI CCNNNNNNNGG 1 cut(s) 869
BsmAI GTCTC 1 cut(s) 564
BsmI GAATGC 2 cut(s) 313, 1108
BsnI GGCC 4 cut(s) 30, 191, 303, 1036
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 105, 465
Bsp143I GATC 6 cut(s) 133, 151, 214, 321, 423, 604
Bsp19I CCATGG 2 cut(s) 45, 1083
BspACI CCGC 2 cut(s) 288, 629
BspANI GGCC 4 cut(s) 30, 191, 303, 1036
BspCNI CTCAG 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 627
BspMAI CTGCAG 1 cut(s) 732
BspPI GGATC 4 cut(s) 141, 146, 431, 599
BspQI GCTCTTC 1 cut(s) 1047
BspT104I TTCGAA 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 74
BsrI ACTGG 2 cut(s) 741, 1037
BssECI CCNNGG 4 cut(s) 45, 155, 315, 1083
BssMI GATC 6 cut(s) 133, 151, 214, 321, 423, 604
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 4 cut(s) 45, 155, 315, 1083
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 143, 277
Bst6I CTCTTC 3 cut(s) 366, 549, 1047
BstAFI CTTAAG 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 177
BstDEI CTNAG 4 cut(s) 81, 506, 621, 1129
BstDSI CCRYGG 2 cut(s) 45, 1083
BstENI CCTNNNNNAGG 1 cut(s) 867
BstF5I GGATG 3 cut(s) 99, 718, 1027
BstKTI GATC 6 cut(s) 136, 154, 217, 324, 426, 607
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 6 cut(s) 133, 151, 214, 321, 423, 604
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 25, 103
BstSFI CTRYAG 1 cut(s) 728
BstSLI GKGCMC 2 cut(s) 105, 465
BstV1I GCAGC 6 cut(s) 323, 358, 742, 901, 926, 1084
BstV2I GAAGAC 2 cut(s) 120, 641
BstX2I RGATCY 4 cut(s) 133, 214, 321, 604
BstXI CCANNNNNNTGG 1 cut(s) 1090
BstYI RGATCY 4 cut(s) 133, 214, 321, 604
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 4 cut(s) 30, 191, 303, 1036
BtgI CCRYGG 2 cut(s) 45, 1083
BtsCI GGATG 3 cut(s) 99, 718, 1027
CaiI CAGNNNCTG 2 cut(s) 608, 736
Cfr13I GGNCC 1 cut(s) 583
CseI GACGC 1 cut(s) 1022
Csp6I GTAC 4 cut(s) 291, 521, 683, 1126
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 6 cut(s) 46, 64, 410, 427, 587, 1084
CviQI GTAC 4 cut(s) 291, 521, 683, 1126
DdeI CTNAG 4 cut(s) 81, 506, 621, 1129
DpnI GATC 6 cut(s) 135, 153, 216, 323, 425, 606
DpnII GATC 6 cut(s) 133, 151, 214, 321, 423, 604
Eam1104I CTCTTC 3 cut(s) 366, 549, 1047
EarI CTCTTC 3 cut(s) 366, 549, 1047
Eco130I CCWWGG 4 cut(s) 45, 155, 315, 1083
Eco47I GGWCC 1 cut(s) 583
Eco81I CCTNAGG 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 867
EcoRI GAATTC 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 4 cut(s) 45, 155, 315, 1083
ErhI CCWWGG 4 cut(s) 45, 155, 315, 1083
FaeI CATG 6 cut(s) 49, 67, 413, 430, 590, 1087
FatI CATG 6 cut(s) 45, 63, 409, 426, 586, 1083
Fnu4HI GCNGC 7 cut(s) 312, 347, 629, 731, 890, 915, 1073
FokI GGATG 3 cut(s) 106, 725, 1034
Fsp4HI GCNGC 7 cut(s) 312, 347, 629, 731, 890, 915, 1073
FspBI CTAG 3 cut(s) 752, 797, 869
GluI GCNGC 7 cut(s) 312, 347, 629, 731, 890, 915, 1073
GsuI CTGGAG 2 cut(s) 758, 905
HaeIII GGCC 4 cut(s) 30, 191, 303, 1036
HapII CCGG 3 cut(s) 105, 527, 962
HgaI GACGC 1 cut(s) 1022
Hin1II CATG 6 cut(s) 49, 67, 413, 430, 590, 1087
HinfI GANTC 3 cut(s) 174, 611, 665
HpaII CCGG 3 cut(s) 105, 527, 962
HphI GGTGA 6 cut(s) 97, 155, 220, 938, 976, 1037
Hpy166II GTNNAC 4 cut(s) 88, 463, 478, 503
Hpy188I TCNGA 2 cut(s) 670, 1117
Hpy188III TCNNGA 5 cut(s) 332, 373, 608, 837, 884
Hpy8I GTNNAC 4 cut(s) 88, 463, 478, 503
HpyCH4III ACNGT 2 cut(s) 143, 277
HpyCH4IV ACGT 3 cut(s) 117, 262, 646
HpyCH4V TGCA 9 cut(s) 251, 311, 409, 463, 706, 730, 844, 902, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 4 cut(s) 81, 506, 621, 1129
HpySE526I ACGT 3 cut(s) 117, 262, 646
Hsp92II CATG 6 cut(s) 49, 67, 413, 430, 590, 1087
Kzo9I GATC 6 cut(s) 133, 151, 214, 321, 423, 604
LguI GCTCTTC 1 cut(s) 1047
LmnI GCTCC 2 cut(s) 625, 886
Lsp1109I GCAGC 6 cut(s) 323, 358, 742, 901, 926, 1084
LweI GCATC 2 cut(s) 552, 889
MaeI CTAG 3 cut(s) 752, 797, 869
MaeII ACGT 3 cut(s) 117, 262, 646
MaeIII GTNAC 4 cut(s) 143, 450, 616, 1010
MalI GATC 6 cut(s) 135, 153, 216, 323, 425, 606
MboI GATC 6 cut(s) 133, 151, 214, 321, 423, 604
MfeI CAATTG 1 cut(s) 848
MflI RGATCY 4 cut(s) 133, 214, 321, 604
MhlI GDGCHC 2 cut(s) 105, 465
MluCI AATT 3 cut(s) 773, 832, 848
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 195, 198, 550, 574, 616, 793, 866, 873, 992
MroXI GAANNNNTTC 1 cut(s) 696
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 951, 1088
MspA1I CMGCKG 1 cut(s) 917
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 3 cut(s) 105, 527, 962
MspR9I CCNGG 2 cut(s) 27, 105
MunI CAATTG 1 cut(s) 848
Mva1269I GAATGC 2 cut(s) 313, 1108
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 188
NciI CCSGG 1 cut(s) 105
NcoI CCATGG 2 cut(s) 45, 1083
NdeII GATC 6 cut(s) 133, 151, 214, 321, 423, 604
NlaIII CATG 6 cut(s) 49, 67, 413, 430, 590, 1087
NlaIV GGNNCC 1 cut(s) 627
NmuCI GTSAC 3 cut(s) 143, 450, 1010
NspV TTCGAA 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 147, 268
PctI GAATGC 2 cut(s) 313, 1108
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 3 cut(s) 174, 611, 665
PflFI GACNNNGTC 1 cut(s) 575
PkrI GCNGC 7 cut(s) 313, 348, 630, 732, 891, 916, 1074
Ppu21I YACGTR 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 583
PstI CTGCAG 1 cut(s) 732
PstNI CAGNNNCTG 2 cut(s) 608, 736
PsuI RGATCY 4 cut(s) 133, 214, 321, 604
PsyI GACNNNGTC 1 cut(s) 575
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 4 cut(s) 292, 522, 684, 1127
RsaNI GTAC 4 cut(s) 291, 521, 683, 1126
RseI CAYNNNNRTG 2 cut(s) 951, 1088
SapI GCTCTTC 1 cut(s) 1047
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 7 cut(s) 312, 347, 629, 731, 890, 915, 1073
Sau3AI GATC 6 cut(s) 133, 151, 214, 321, 423, 604
Sau96I GGNCC 1 cut(s) 583
ScaI AGTACT 1 cut(s) 1127
ScrFI CCNGG 2 cut(s) 27, 105
SduI GDGCHC 2 cut(s) 105, 465
SfaNI GCATC 2 cut(s) 552, 889
SfcI CTRYAG 1 cut(s) 728
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 1 cut(s) 583
SmiMI CAYNNNNRTG 2 cut(s) 951, 1088
SmlI CTYRAG 3 cut(s) 74, 199, 1006
SmoI CTYRAG 3 cut(s) 74, 199, 1006
Sse9I AATT 3 cut(s) 773, 832, 848
SsiI CCGC 2 cut(s) 288, 629
SspMI CTAG 3 cut(s) 752, 797, 869
StyD4I CCNGG 2 cut(s) 25, 103
StyI CCWWGG 4 cut(s) 45, 155, 315, 1083
TaaI ACNGT 2 cut(s) 143, 277
TaiI ACGT 3 cut(s) 120, 265, 649
TaqI TCGA 3 cut(s) 177, 353, 579
TasI AATT 3 cut(s) 773, 832, 848
TatI WGTACW 3 cut(s) 520, 682, 1125
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 3 cut(s) 174, 611, 665
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseFI GTSAC 3 cut(s) 143, 450, 1010
TseI GCWGC 6 cut(s) 311, 346, 730, 889, 914, 1072
Tsp45I GTSAC 3 cut(s) 143, 450, 1010
TspDTI ATGAA 4 cut(s) 69, 705, 969, 1076
TspGWI ACGGA 1 cut(s) 606
Tth111I GACNNNGTC 1 cut(s) 575
Vha464I CTTAAG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 583
XagI CCTNNNNNAGG 1 cut(s) 867
XapI RAATTY 2 cut(s) 773, 832
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 3 cut(s) 752, 797, 869
ZrmI AGTACT 1 cut(s) 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.