Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012661

Physical Location & Seq

Genomic Coordinates Forward (+)

14785862 .. 14786500

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCTTCAGAGGAAGGTATTTAAATCTTGCTTTGTTATTATTTTGTTAATATCCTCACATAAGCTACAAAGGAAGTTAAGGTCTGAAGGTGGTATTAAGGCGTTGCTAGGAATTGTGAGGTGCGGGCATCCTGGAATTGCTAACTTTGCAAAATGTGAATCACGAAATGGAAAATCTTTCTTGATAGAAGATGGTGCACTTCCATGGATTGTGCAAAATGCTAATGATGAGGCTGCACCAATCCGGCGCCACATTGAGCTTGCACTCTGTCACCAAGCACAACATGAGGTGAGTGCGAAGGACATGATTAGTGGAGGTGCCCTTTGGAAGCTAGTTAGAATTTCCCATGACTGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

120

Amino Acids

13.22

Weight (kDa)

9.5

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012661)

Species	Orthologous Gene IDs
malus_domestica	MD00G1132200.v1.1 MD04G1087800.v1.1 MD04G1141600.v1.1
pyrus_communis	pycom07g11320 pycom11g14700 pycom11g14710
rosa_chinensis	RchiOBHm_Chr2g0129331 RchiOBHm_Chr7g0200981
rosa_laevigata	RLG00000003711
rosa_roxburghii	Rroxscaffold_2G00107180 Rroxscaffold_3G00255790 Rroxscaffold_7G00189740
rosa_rugosa	Rorug05G0329400 Rorug07G0061500
rosa_samantha	Rh7BG189900 Rh7BG447100 Rh7DG191500 Rh7DG192500
rosa_wichuraiana	Rw0G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	246, 317
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	64, 259, 331
AluI	AGCT	3 cut(s)	64, 259, 331
Alw21I	GWGCWC	1 cut(s)	199
Alw44I	GTGCAC	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	263, 301
BaeGI	GKGCMC	2 cut(s)	199, 322
BanI	GGYRCC	2 cut(s)	246, 317
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	132
BfaI	CTAG	2 cut(s)	107, 332
BfoI	RGCGCY	1 cut(s)	250
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	248, 319
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	127
BseSI	GKGCMC	2 cut(s)	199, 322
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	219
BshNI	GGYRCC	2 cut(s)	246, 317
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	199, 322
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	248, 319
BspT107I	GGYRCC	2 cut(s)	246, 317
BssECI	CCNNGG	1 cut(s)	203
BssNI	GRCGYC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	125, 261
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	2 cut(s)	199, 322
BstV1I	GCAGC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	125, 261
CfoI	GCGC	1 cut(s)	249
CviAII	CATG	4 cut(s)	204, 284, 304, 347
CviJI	RGCY	4 cut(s)	64, 233, 259, 331
CviKI_1	RGCY	4 cut(s)	64, 233, 259, 331
DinI	GGCGCC	1 cut(s)	248
DraI	TTTAAA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	203
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	4 cut(s)	207, 287, 307, 350
FaiI	YATR	6 cut(s)	60, 205, 285, 305, 348, 358
FatI	CATG	4 cut(s)	203, 283, 303, 346
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	107, 332
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	250
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	207, 287, 307, 350
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	2 cut(s)	263, 301
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	9, 85
Hpy188III	TCNNGA	2 cut(s)	162, 181
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	7, 80, 292
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	5 cut(s)	149, 197, 214, 236, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	4 cut(s)	207, 287, 307, 350
HspAI	GCGC	1 cut(s)	247
KasI	GGCGCC	1 cut(s)	246
LpnPI	CCDG	3 cut(s)	117, 144, 257
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	107, 332
MaeIII	GTNAC	1 cut(s)	269
MboII	GAAGA	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	199, 322
MluCI	AATT	3 cut(s)	111, 135, 339
Mly113I	GGCGCC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	3, 64, 111, 223, 280, 308
MseI	TTAA	4 cut(s)	21, 47, 77, 96
MslI	CAYNNNNRTG	1 cut(s)	202
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	146
NarI	GGCGCC	1 cut(s)	247
NcoI	CCATGG	1 cut(s)	203
NlaIII	CATG	4 cut(s)	207, 287, 307, 350
NlaIV	GGNNCC	2 cut(s)	248, 319
NmuCI	GTSAC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	235
PluTI	GGCGCC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	248, 319
RseI	CAYNNNNRTG	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	21, 47, 77, 96
SatI	GCNGC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	199, 322
SetI	ASST	9 cut(s)	18, 66, 83, 91, 122, 261, 291, 319, 333
SfaNI	GCATC	1 cut(s)	136
SfoI	GGCGCC	1 cut(s)	248
SmiI	ATTTAAAT	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	202
Sse9I	AATT	3 cut(s)	111, 135, 339
SsiI	CCGC	1 cut(s)	123
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	107, 332
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	203
SwaI	ATTTAAAT	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	353
TasI	AATT	3 cut(s)	111, 135, 339
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	4 cut(s)	21, 47, 77, 96
Tru9I	TTAA	4 cut(s)	21, 47, 77, 96
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	339
XspI	CTAG	2 cut(s)	107, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.