Rroxscaffold_3G00255790
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
50194424 .. 50195376
953 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00255790.1

Sequence Viewer

Length: 255 bp
ATGAATCAATGGGGAATTAGTTTGTTATCTATGAAAGCAGCCAACGGTGAAGATCCACAGACCCTTCGAATGGTTTCTGGAGCAATTGGTAATCTTTGTGGAAATGATAAGTTACAGAGCCAGCTAAGGGCTGAAGGTGGCATTAAGGCATTGCTAGGAATGGTCAGATATGGGCGTCCAGATGTTCTTGCACAAGTTGCTCATGGGATTGCAAATTTTGCAAAATGCGAGTCTAGGGCATCTGTACAAGGTTGA

Protein Analysis

84

Amino Acids

8.87

Weight (kDa)

9.24

Isoelectric Point (pI)

17.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 70, 127
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwI GGATC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 214
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
Asp700I GAANNNNTTC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 67
BbvI GCAGC 1 cut(s) 50
BfaI CTAG 2 cut(s) 155, 234
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmsI GCATC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 175
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 127
Bse3DI GCAATG 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 70, 127
BseMI GCAATG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 70, 127
Bsp119I TTCGAA 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 52
BspPI GGATC 1 cut(s) 47
BspT104I TTCGAA 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 244
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 175
BstAPI GCANNNNNTGC 2 cut(s) 197, 218
BstAUI TGTACA 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 125
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 197, 218
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 122
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 245
CviAII CATG 1 cut(s) 203
CviJI RGCY 4 cut(s) 41, 120, 124, 131
CviKI_1 RGCY 4 cut(s) 41, 120, 124, 131
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 153
FaeI CATG 1 cut(s) 206
FaiI YATR 3 cut(s) 32, 171, 204
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 155, 234
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 99
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 1 cut(s) 206
HinfI GANTC 2 cut(s) 4, 230
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 78, 179
HpyAV CCTTC 2 cut(s) 74, 128
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 191, 212, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 218
HpyF3I CTNAG 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 3 cut(s) 63, 134, 192
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 248
MaeI CTAG 2 cut(s) 155, 234
MaeIII GTNAC 1 cut(s) 111
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 52
MluCI AATT 3 cut(s) 15, 84, 214
MlyI GAGTC 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 1 cut(s) 144
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 197, 218
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 206
NspV TTCGAA 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 52
SchI GAGTC 1 cut(s) 239
SetI ASST 3 cut(s) 126, 139, 253
SfaNI GCATC 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 67
SgeI CNNG 9 cut(s) 90, 133, 167, 191, 200, 206, 215, 241, 246
Sse9I AATT 3 cut(s) 15, 84, 214
SspMI CTAG 2 cut(s) 155, 234
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 67
TasI AATT 3 cut(s) 15, 84, 214
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 17, 47
XapI RAATTY 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 2 cut(s) 155, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.