Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Forward (+)

37713181 .. 37714804

Gene Structure 1624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1165700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGAGTAGCTTCTCTTCTCCCCGAAACGATACTTTTCCTGCTGGCCTCCGGGTCCTCGTCGTCGACGACGATCCCACTTGGCTTAAGATCTTAGAAAAGATGCTCAAGAAGTGCTCCTACGAAGTGACTACATGTGGTTTGGCAAGAGATGCTTTGCACTTGCTTCGCCAAAAGAAAGATGGATATGACATTGTTATCAGTGATGTGAACATGCCTGACATGGATGGTTTTAGACTTCTTGAGCATGTAGGACTTGAGATGGATCTTCCAGTTATTATGATGTCTGTTGATGGAGAAGCGAGTAGGGTTATGAAAGGAGTTCAACATGGAGCATGTGATTATCTTCTTAAGCCGATAAGAATGAAAGAACTGCGCAATATATGGCAGCATGTCTTTAGAAAGAAGATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

139

Amino Acids

15.87

Weight (kDa)

6.96

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	19 - 128	1.8e-26	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	66
AclWI	GGATC	2 cut(s)	68, 273
AflII	CTTAAG	2 cut(s)	86, 350
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	326
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	68, 273
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	3 cut(s)	33, 104, 136
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	4 cut(s)	176, 221, 256, 287
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcnI	CCSGG	1 cut(s)	53
BfrI	CTTAAG	2 cut(s)	86, 350
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	93, 142
BpuEI	CTTGAG	3 cut(s)	92, 263, 278
BpuMI	CCSGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	400
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	52
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	73, 90, 265
BspANI	GGCC	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	68, 273
BspTI	CTTAAG	2 cut(s)	86, 350
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	3 cut(s)	73, 90, 265
Bst6I	CTCTTC	1 cut(s)	22
BstAFI	CTTAAG	2 cut(s)	86, 350
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	76, 93, 268
BstMBI	GATC	3 cut(s)	73, 90, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNSI	RCATGY	5 cut(s)	138, 217, 251, 339, 395
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	2 cut(s)	90, 265
BstYI	RGATCY	2 cut(s)	90, 265
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	7 cut(s)	135, 214, 223, 248, 329, 336, 392
CviJI	RGCY	4 cut(s)	12, 48, 85, 355
CviKI_1	RGCY	4 cut(s)	12, 48, 85, 355
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	3 cut(s)	75, 92, 267
DpnII	GATC	3 cut(s)	73, 90, 265
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	55
FaeI	CATG	7 cut(s)	138, 217, 226, 251, 332, 339, 395
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	7 cut(s)	134, 213, 222, 247, 328, 335, 391
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	389
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	52
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	7 cut(s)	138, 217, 226, 251, 332, 339, 395
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	67, 211
Hpy188III	TCNNGA	2 cut(s)	109, 242
Hpy8I	GTNNAC	2 cut(s)	67, 211
Hpy99I	CGWCG	4 cut(s)	65, 68, 71, 74
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	94
Hsp92II	CATG	7 cut(s)	138, 217, 226, 251, 332, 339, 395
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	73, 90, 265
LmnI	GCTCC	2 cut(s)	122, 332
LpnPI	CCDG	5 cut(s)	30, 54, 65, 231, 285
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	2 cut(s)	93, 142
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	75, 92, 267
MboI	GATC	3 cut(s)	73, 90, 265
MboII	GAAGA	3 cut(s)	9, 260, 338
MflI	RGATCY	2 cut(s)	90, 265
MhlI	GDGCHC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	59, 68
MseI	TTAA	3 cut(s)	87, 351, 415
MspCI	CTTAAG	2 cut(s)	86, 350
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	73, 90, 265
NlaIII	CATG	7 cut(s)	138, 217, 226, 251, 332, 339, 395
NlaIV	GGNNCC	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	127
NsbI	TGCGCA	1 cut(s)	377
NspI	RCATGY	5 cut(s)	138, 217, 251, 339, 395
PciI	ACATGT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 69
PkrI	GCNGC	1 cut(s)	390
PpuMI	RGGWCCY	1 cut(s)	55
PscI	ACATGT	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	90, 265
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	87, 351, 415
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	3 cut(s)	73, 90, 265
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	93, 142
SgrDI	CGTCGACG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	5 cut(s)	86, 107, 242, 257, 350
SmoI	CTYRAG	5 cut(s)	86, 107, 242, 257, 350
StyD4I	CCNGG	1 cut(s)	51
TaqI	TCGA	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	87, 351, 415
Tru9I	TTAA	3 cut(s)	87, 351, 415
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	329, 380
TspRI	CASTG	1 cut(s)	208
Vha464I	CTTAAG	2 cut(s)	86, 350
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	5 cut(s)	138, 217, 251, 339, 395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.