Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Forward (+)

6282919 .. 6284052

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATTATTCTCACCGAGAAAGTTCATGTGCAGAAGTACCGGCTCTACTTGAGTAGGCTGCAGAAAGAGAATGAACTTAAATCTTCTTGTGGGGGGATGAAGCATTCCGACTATTCCTCAAAAGATGCTCAAGGAAGTTTTGGCCTTCAGAACTCGATCAGCATCCAACAAAGTGATGTTGCACATGGCAGCTTCAAAGTTTCTGGCGATAACTTAGTTTCCCAGAGAGTGGGTACGAAGAGCCACGAGAGTGACATAGAGGGGATTGTTTCAGAGCCTATGGCAGAACCTAAGAAAGGTTCGAACGGAAATATTCCTGATTCTCAGAAGACCAGGAGTCCACAGATGGACTTCAATAATTCTTACGCAGAAACCAAAAAAGGTTTGATTGGCAATGTTCCTGATTCTCAGAACATTAGAACTCCGCAGGTGCGCCCCAGTCATTCAATTGCATCGGTGGAATCTGAAGTAGACTTCACTGAATTTGAATCCGCTATTCCAACAAAGTATTCTTGGAATGAAATTCAATTGAATAAAAAGCAGAAGCCACTTATTCAGTTAAATAGTGGATTCAACAAGCCACCACTGCCCGGTCCACACAGCCATTTCCAAGTTGATCAAGTACAATCAATTCCTTCCATTAGTTCAAGACCTTCTATCACGGAGGAAGATGTAACTGGCCCTGCTAAGAGTAAGCCTTCGTATTCTGAGTGCATAAATACTCAGGGTAGCCATGTAAGTCCAACAATAAGCGCAACAGACTCCTTTCCTGATCAAATCAAGAGCTGTCTGGTAAACCATCAAGTTTCTGAGGCCATTTCAACTAGTACAGCAGACATGGAGTACCAGGGCTTCAACTTGAACTGCATTACTGATTTGGAATCCGCCCAAAGGAACCTAATCGTGGGAAGTGCATCGCCTTTTGCTTCTTTGGATGACGGCTTTCAAATTTGTTGGTATCAAGGTGATTGTTATGGCATGAATCTTGGACTTCAAGATATAGAGTTCCCGGAGTACAATGATCCTGCACTTGTTTCTGAAGTTCCCGCTCACTTGTATGATGCATTGAGATTTGATTTTCCATATGAGCCATCAGAATATTCTGTCATAGGTCAAGGTCTATTCATATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

378

Amino Acids

41.53

Weight (kDa)

5.04

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	418
Acc36I	ACCTGC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	1049
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	4 cut(s)	425, 492, 885, 1047
AclWI	GGATC	1 cut(s)	1016
AcsI	RAATTY	3 cut(s)	482, 522, 948
AcuI	CTGAAG	3 cut(s)	131, 486, 1059
AfaI	GTAC	6 cut(s)	38, 235, 624, 829, 845, 1016
AfiI	CCNNNNNNNGG	5 cut(s)	229, 296, 590, 891, 904
AhdI	GACNNNNNGTC	1 cut(s)	336
AhlI	ACTAGT	1 cut(s)	824
AjnI	CCWGG	2 cut(s)	332, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	192, 786
AluI	AGCT	2 cut(s)	192, 786
AlwI	GGATC	1 cut(s)	1016
AoxI	GGCC	3 cut(s)	142, 679, 813
ApeKI	GCWGC	2 cut(s)	58, 189
ApoI	RAATTY	3 cut(s)	482, 522, 948
AspLEI	GCGC	2 cut(s)	435, 755
AspS9I	GGNCC	2 cut(s)	593, 680
AsuC2I	CCSGG	2 cut(s)	591, 1010
AsuHPI	GGTGA	2 cut(s)	4, 977
AsuII	TTCGAA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	836, 868
BauI	CACGAG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	45, 201
BccI	CCATC	3 cut(s)	340, 807, 1099
BceAI	ACGGC	1 cut(s)	955
BciT130I	CCWGG	2 cut(s)	334, 848
BclI	TGATCA	2 cut(s)	616, 772
BcnI	CCSGG	2 cut(s)	591, 1010
BcuI	ACTAGT	1 cut(s)	824
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	2 cut(s)	59, 190
BlsI	GCNGC	2 cut(s)	60, 191
Bme1390I	CCNGG	4 cut(s)	334, 591, 848, 1010
Bme18I	GGWCC	1 cut(s)	593
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	593, 680
BmiI	GGNNCC	1 cut(s)	896
BmrFI	CCNGG	4 cut(s)	334, 591, 848, 1010
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	5 cut(s)	115, 171, 461, 923, 1051
BmuI	ACTGGG	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	335
Bpu14I	TTCGAA	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	70, 114
BpuMI	CCSGG	2 cut(s)	591, 1010
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	847
Bsc4I	CCNNNNNNNGG	5 cut(s)	229, 296, 590, 891, 904
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	438, 682
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	334, 848
BseDI	CCNNGG	1 cut(s)	847
BseGI	GGATG	3 cut(s)	102, 162, 940
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	5 cut(s)	229, 296, 590, 891, 904
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	5 cut(s)	338, 422, 699, 737, 801
BseNI	ACTGG	2 cut(s)	438, 682
BseXI	GCAGC	2 cut(s)	45, 201
BsgI	GTGCAG	2 cut(s)	50, 1011
BshFI	GGCC	3 cut(s)	144, 681, 815
BsiSI	CCGG	3 cut(s)	40, 591, 1010
BslI	CCNNNNNNNGG	5 cut(s)	229, 296, 590, 891, 904
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	144, 681, 815
Bsp119I	TTCGAA	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	156, 616, 772, 1021
BspACI	CCGC	4 cut(s)	425, 492, 885, 1047
BspANI	GGCC	3 cut(s)	144, 681, 815
BspCNI	CTCAG	5 cut(s)	337, 421, 700, 736, 802
BspHI	TCATGA	1 cut(s)	1130
BspLI	GGNNCC	1 cut(s)	896
BspMAI	CTGCAG	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	1016
BspQI	GCTCTTC	1 cut(s)	233
BspT104I	TTCGAA	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	1049
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	438, 682
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	847
BssMI	GATC	4 cut(s)	156, 616, 772, 1021
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	334, 848
Bst6I	CTCTTC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	302
BstDEI	CTNAG	8 cut(s)	214, 291, 324, 408, 687, 708, 723, 810
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	3 cut(s)	102, 162, 940
BstHHI	GCGC	2 cut(s)	435, 755
BstKTI	GATC	4 cut(s)	159, 619, 775, 1024
BstMBI	GATC	4 cut(s)	156, 616, 772, 1021
BstMWI	GCNNNNNNNGC	1 cut(s)	586
BstNI	CCWGG	2 cut(s)	334, 848
BstSCI	CCNGG	4 cut(s)	332, 589, 846, 1008
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	45, 201
BstV2I	GAAGAC	1 cut(s)	335
BsuRI	GGCC	3 cut(s)	144, 681, 815
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	3 cut(s)	102, 162, 940
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	2 cut(s)	477, 584
BveI	ACCTGC	1 cut(s)	418
CciI	TCATGA	1 cut(s)	1130
CfoI	GCGC	2 cut(s)	435, 755
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	593, 680
Csp6I	GTAC	6 cut(s)	37, 234, 623, 828, 844, 1015
CviAII	CATG	6 cut(s)	26, 185, 734, 838, 979, 1131
CviQI	GTAC	6 cut(s)	37, 234, 623, 828, 844, 1015
DdeI	CTNAG	8 cut(s)	214, 291, 324, 408, 687, 708, 723, 810
DpnI	GATC	4 cut(s)	158, 618, 774, 1023
DpnII	GATC	4 cut(s)	156, 616, 772, 1021
DriI	GACNNNNNGTC	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	233
Eam1105I	GACNNNNNGTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	874
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	3 cut(s)	131, 486, 1059
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoRII	CCWGG	2 cut(s)	332, 846
EcoT22I	ATGCAT	1 cut(s)	1066
FaeI	CATG	6 cut(s)	29, 188, 737, 841, 982, 1134
FatI	CATG	6 cut(s)	25, 184, 733, 837, 978, 1130
FauI	CCCGC	1 cut(s)	1054
FauNDI	CATATG	1 cut(s)	1084
FbaI	TGATCA	2 cut(s)	616, 772
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	59, 190
FokI	GGATG	3 cut(s)	109, 149, 947
Fsp4HI	GCNGC	2 cut(s)	59, 190
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	2 cut(s)	434, 754
GluI	GCNGC	2 cut(s)	59, 190
HaeIII	GGCC	3 cut(s)	144, 681, 815
HapII	CCGG	3 cut(s)	40, 591, 1010
HhaI	GCGC	2 cut(s)	435, 755
Hin1II	CATG	6 cut(s)	29, 188, 737, 841, 982, 1134
Hin6I	GCGC	2 cut(s)	433, 753
HinP1I	GCGC	2 cut(s)	433, 753
HinfI	GANTC	9 cut(s)	320, 337, 404, 461, 488, 570, 761, 881, 982
HpaII	CCGG	3 cut(s)	40, 591, 1010
HphI	GGTGA	2 cut(s)	4, 977
Hpy166II	GTNNAC	4 cut(s)	341, 472, 596, 796
Hpy188III	TCNNGA	7 cut(s)	317, 401, 648, 770, 781, 995, 1131
Hpy8I	GTNNAC	4 cut(s)	341, 472, 596, 796
HpyAV	CCTTC	4 cut(s)	155, 645, 663, 708
HpyCH4V	TGCA	9 cut(s)	31, 61, 182, 452, 714, 867, 914, 1028, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	586
HpyF3I	CTNAG	8 cut(s)	214, 291, 324, 408, 687, 708, 723, 810
Hsp92II	CATG	6 cut(s)	29, 188, 737, 841, 982, 1134
HspAI	GCGC	2 cut(s)	433, 753
Ksp22I	TGATCA	2 cut(s)	616, 772
Kzo9I	GATC	4 cut(s)	156, 616, 772, 1021
LguI	GCTCTTC	1 cut(s)	233
Lsp1109I	GCAGC	2 cut(s)	45, 201
LweI	GCATC	5 cut(s)	115, 171, 461, 923, 1051
MaeI	CTAG	1 cut(s)	825
MaeIII	GTNAC	2 cut(s)	251, 673
MalI	GATC	4 cut(s)	158, 618, 774, 1023
MbiI	CCGCTC	1 cut(s)	1049
MboI	GATC	4 cut(s)	156, 616, 772, 1021
MboII	GAAGA	4 cut(s)	75, 250, 340, 680
MfeI	CAATTG	2 cut(s)	447, 527
MluCI	AATT	7 cut(s)	358, 447, 482, 522, 527, 630, 948
MlyI	GAGTC	2 cut(s)	346, 755
MmeI	TCCRAC	4 cut(s)	132, 190, 524, 767
MnlI	CCTC	4 cut(s)	127, 253, 658, 805
Mph1103I	ATGCAT	1 cut(s)	1066
MseI	TTAA	2 cut(s)	78, 560
MslI	CAYNNNNRTG	2 cut(s)	249, 1056
MspI	CCGG	3 cut(s)	40, 591, 1010
MspR9I	CCNGG	4 cut(s)	334, 591, 848, 1010
MunI	CAATTG	2 cut(s)	447, 527
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	2 cut(s)	334, 848
MwoI	GCNNNNNNNGC	1 cut(s)	586
NciI	CCSGG	2 cut(s)	591, 1010
NdeI	CATATG	1 cut(s)	1084
NdeII	GATC	4 cut(s)	156, 616, 772, 1021
NlaIII	CATG	6 cut(s)	29, 188, 737, 841, 982, 1134
NlaIV	GGNNCC	1 cut(s)	896
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	1066
NspV	TTCGAA	1 cut(s)	302
OliI	CACNNNNGTG	1 cut(s)	249
PagI	TCATGA	1 cut(s)	1130
PaqCI	CACCTGC	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	7 cut(s)	320, 404, 461, 488, 570, 881, 982
PflMI	CCANNNNNTGG	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	1008
PkrI	GCNGC	2 cut(s)	60, 191
PleI	GAGTC	2 cut(s)	345, 755
PpsI	GAGTC	2 cut(s)	345, 755
Psp6I	CCWGG	2 cut(s)	332, 846
PspGI	CCWGG	2 cut(s)	332, 846
PspN4I	GGNNCC	1 cut(s)	896
PspPI	GGNCC	2 cut(s)	593, 680
PstI	CTGCAG	1 cut(s)	63
RsaI	GTAC	6 cut(s)	38, 235, 624, 829, 845, 1016
RsaNI	GTAC	6 cut(s)	37, 234, 623, 828, 844, 1015
RseI	CAYNNNNRTG	2 cut(s)	249, 1056
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	78, 560
SatI	GCNGC	2 cut(s)	59, 190
Sau3AI	GATC	4 cut(s)	156, 616, 772, 1021
Sau96I	GGNCC	2 cut(s)	593, 680
SchI	GAGTC	2 cut(s)	346, 755
ScrFI	CCNGG	4 cut(s)	334, 591, 848, 1010
SfaNI	GCATC	5 cut(s)	115, 171, 461, 923, 1051
SfcI	CTRYAG	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	302
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	2 cut(s)	249, 1056
SmlI	CTYRAG	2 cut(s)	49, 129
SmoI	CTYRAG	2 cut(s)	49, 129
SpeI	ACTAGT	1 cut(s)	824
Sse9I	AATT	7 cut(s)	358, 447, 482, 522, 527, 630, 948
SsiI	CCGC	4 cut(s)	425, 492, 885, 1047
SspI	AATATT	2 cut(s)	313, 1100
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	4 cut(s)	332, 589, 846, 1008
TaqI	TCGA	2 cut(s)	155, 302
TasI	AATT	7 cut(s)	358, 447, 482, 522, 527, 630, 948
TatI	WGTACW	3 cut(s)	622, 827, 1014
TfiI	GAWTC	7 cut(s)	320, 404, 461, 488, 570, 881, 982
Tru1I	TTAA	2 cut(s)	78, 560
Tru9I	TTAA	2 cut(s)	78, 560
TscAI	CASTG	2 cut(s)	484, 591
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	58, 189
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	6 cut(s)	14, 87, 113, 534, 995, 1114
TspGWI	ACGGA	2 cut(s)	321, 677
TspRI	CASTG	2 cut(s)	484, 591
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	3 cut(s)	482, 522, 948
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	1 cut(s)	825
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.