Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Forward (+)

6194265 .. 6195450

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAACGTGCCTTGGTTGACAAGAGAAAATGTTGCTAGCCACTTGCAGAAGTACCGGCTCTACTTGGGTAGGCTGCAAAAAGAAAATGACCTTAAATCTTCTTTTGGTGGGATGAAGCATTCCGATTCTCCCTCAAAAGATGCTCAAGGAAGTTTTGGCCTTCAGAACTCGATCAGCATTCAACAAAATGATTTTGCACATGGCAGCTTCAGAGTTTCTGGCAATAACTTAGTTGCTCAGTGTGTGGATCCGAAGAGCCACGAGGGTGATGCAAAGGGGATTGTTTCAGAGCCTGTAGCAGAAATTAAGAAAGGTTCGAACGGAAATATTCCTGATTCTCAAAAGACCAGGAGTTTACAGATGGTGGACTTCAATAATTCTTGTGTAGAACCCAAAAATGGTGTGATTGGAAATGTTCCTGATTCGCAGAAGATCAGGAGTTCACCACTGGACTTCAATAATTCTTATGCAGAAACCAAAAAAGTTTTGAATGGCAATGTTCCTGATTCTCAGAAGATTAGGACTCCGCAGGTGCACCCCAGTCATTCATTTACATCAGTAGAATCTGAAGTAAACTTCACAGAATTTGAATCCACTATCCGGACAAAGTATTCTTGGAATGAAATTCAATTGAAAAAAGAGCAGAAGCCACTTATTCAGTTAAACAGTGGATTCAACAAGCCACCACTGCCCGGTCCACACAGCCATTTCCAAGTTGATCGATCGACTACAATCAATTCCTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

250

Amino Acids

27.73

Weight (kDa)

8.97

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
Acc36I	ACCTGC	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	600
AciI	CCGC	1 cut(s)	527
AclWI	GGATC	2 cut(s)	242, 255
AcsI	RAATTY	2 cut(s)	584, 624
AcuI	CTGAAG	3 cut(s)	146, 193, 588
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	398, 600, 692
AgsI	TTSAA	8 cut(s)	182, 373, 457, 490, 590, 629, 634, 676
AjnI	CCWGG	1 cut(s)	347
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw21I	GWGCWC	1 cut(s)	537
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	242, 255
AlwNI	CAGNNNCTG	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	600
AoxI	GGCC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	2 cut(s)	73, 204
ApoI	RAATTY	2 cut(s)	584, 624
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	2 cut(s)	278, 435
AsuII	TTCGAA	1 cut(s)	317
AsuNHI	GCTAGC	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	537
BamHI	GGATCC	1 cut(s)	247
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	60, 216
BccI	CCATC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	693
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	74, 205
BlsI	GCNGC	2 cut(s)	75, 206
Bme1390I	CCNGG	2 cut(s)	349, 693
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	349, 693
BmrI	ACTGGG	1 cut(s)	534
BmsI	GCATC	2 cut(s)	130, 259
BmtI	GCTAGC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	693
Bsa29I	ATCGAT	1 cut(s)	721
BsaJI	CCNNGG	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 600, 692
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	453, 540
Bse3DI	GCAATG	1 cut(s)	502
BseAI	TCCGGA	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	721
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	398, 600, 692
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	251, 524
BseNI	ACTGG	2 cut(s)	453, 540
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	2 cut(s)	60, 216
Bsh1285I	CGRYCG	1 cut(s)	725
BshFI	GGCC	1 cut(s)	159
BshVI	ATCGAT	1 cut(s)	721
BsiEI	CGRYCG	1 cut(s)	725
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	55, 601, 693
BslI	CCNNNNNNNGG	3 cut(s)	398, 600, 692
BsmI	GAATGC	2 cut(s)	118, 177
BsnI	GGCC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp13I	TCCGGA	1 cut(s)	600
Bsp143I	GATC	5 cut(s)	171, 247, 432, 718, 722
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	2 cut(s)	250, 523
BspDI	ATCGAT	1 cut(s)	721
BspEI	TCCGGA	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	242, 255
BspQI	GCTCTTC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	453, 540
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	5 cut(s)	171, 247, 432, 718, 722
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	3 cut(s)	229, 237, 510
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	5 cut(s)	174, 250, 435, 721, 725
BstMBI	GATC	5 cut(s)	171, 247, 432, 718, 722
BstMCI	CGRYCG	1 cut(s)	725
BstMWI	GCNNNNNNNGC	1 cut(s)	688
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	347, 691
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	60, 216
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	159
BsuTUI	ATCGAT	1 cut(s)	721
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	686
BtsIMutI	CAGTG	4 cut(s)	245, 446, 673, 686
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	695
ClaI	ATCGAT	1 cut(s)	721
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	200
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	229, 237, 510
DpnI	GATC	5 cut(s)	173, 249, 434, 720, 724
DpnII	GATC	5 cut(s)	171, 247, 432, 718, 722
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	3 cut(s)	146, 193, 588
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	203
FaiI	YATR	2 cut(s)	201, 468
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	74, 205
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	74, 205
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	2 cut(s)	74, 205
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	3 cut(s)	55, 601, 693
Hin1II	CATG	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	8 cut(s)	125, 335, 422, 506, 523, 563, 590, 672
HpaII	CCGG	3 cut(s)	55, 601, 693
HphI	GGTGA	2 cut(s)	278, 435
Hpy166II	GTNNAC	7 cut(s)	18, 356, 367, 443, 535, 574, 698
Hpy188I	TCNGA	7 cut(s)	124, 165, 212, 252, 289, 513, 568
Hpy188III	TCNNGA	5 cut(s)	332, 419, 436, 503, 601
Hpy8I	GTNNAC	7 cut(s)	18, 356, 367, 443, 535, 574, 698
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	6 cut(s)	46, 76, 197, 272, 470, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	688
HpyF3I	CTNAG	3 cut(s)	229, 237, 510
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	203
Kpn2I	TCCGGA	1 cut(s)	600
Kzo9I	GATC	5 cut(s)	171, 247, 432, 718, 722
LguI	GCTCTTC	1 cut(s)	248
Lsp1109I	GCAGC	2 cut(s)	60, 216
LweI	GCATC	2 cut(s)	130, 259
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	6
MalI	GATC	5 cut(s)	173, 249, 434, 720, 724
MboI	GATC	5 cut(s)	171, 247, 432, 718, 722
MboII	GAAGA	4 cut(s)	90, 265, 442, 526
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	7 cut(s)	303, 376, 460, 584, 624, 629, 736
MlyI	GAGTC	1 cut(s)	517
MnlI	CCTC	2 cut(s)	142, 256
MroI	TCCGGA	1 cut(s)	600
MseI	TTAA	3 cut(s)	93, 306, 662
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	3 cut(s)	55, 601, 693
MspR9I	CCNGG	2 cut(s)	349, 693
MunI	CAATTG	1 cut(s)	629
Mva1269I	GAATGC	2 cut(s)	118, 177
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	688
NciI	CCSGG	1 cut(s)	693
NdeII	GATC	5 cut(s)	171, 247, 432, 718, 722
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	317
OliI	CACNNNNGTG	1 cut(s)	264
PaqCI	CACCTGC	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	248
PctI	GAATGC	2 cut(s)	118, 177
PfeI	GAWTC	7 cut(s)	125, 335, 422, 506, 563, 590, 672
PkrI	GCNGC	2 cut(s)	75, 206
Ple19I	CGATCG	1 cut(s)	725
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	695
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	247
PvuI	CGATCG	1 cut(s)	725
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	3 cut(s)	93, 306, 662
SatI	GCNGC	2 cut(s)	74, 205
Sau3AI	GATC	5 cut(s)	171, 247, 432, 718, 722
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	349, 693
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	5 cut(s)	9, 93, 209, 316, 534
SfaNI	GCATC	2 cut(s)	130, 259
SfcI	CTRYAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
Sse9I	AATT	7 cut(s)	303, 376, 460, 584, 624, 629, 736
SsiI	CCGC	1 cut(s)	527
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	347, 691
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	4 cut(s)	170, 317, 721, 725
TasI	AATT	7 cut(s)	303, 376, 460, 584, 624, 629, 736
TfiI	GAWTC	7 cut(s)	125, 335, 422, 506, 563, 590, 672
Tru1I	TTAA	3 cut(s)	93, 306, 662
Tru9I	TTAA	3 cut(s)	93, 306, 662
TscAI	CASTG	4 cut(s)	245, 453, 673, 693
TseI	GCWGC	2 cut(s)	73, 204
TspDTI	ATGAA	4 cut(s)	17, 128, 537, 636
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	4 cut(s)	245, 453, 673, 693
VneI	GTGCAC	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	2 cut(s)	584, 624
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.