Rh4AG310600
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
62170339 .. 62174912
4574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG310600.1

Sequence Viewer

Length: 1608 bp
ATGCCTGACATGGATGGTTTTAAACTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGAGAAACAAGTAGAGTTATGAAAGGAGTTCAACATGGAGCATGTGATTATCTTCTTAAGCCTATAAGAATGAAAGAACTGAAAAACATATGGCAGCATGTCTTCAGAAAAAAGATACATGAGATAAGAGACATAGAGGGTCATGAAAGCATCGACGGTATTCAGCTGACGAGAAATGGATCAGATCTCTATGATGATGGATACTTCCTTGGTGCCGACGACCTCACTTCATCGAGAAAAAGAAAGGACATCGAAAACAAATATGATGACAAAGACTTTGGTGATTCTTCATCTACGAAAAAAGCTAGGGTAGTCTGGTCTGTTGATCTTCATCAGAAATTTGTAAAAGCGGTGCATCAGATTGGATTTGACAAAGTTGGTCCAAAGAAAATACTTGACCTGATGAACGTGCCCTGGTTGACCAGAGAAAATGTTGCAAGCCACTTGCAGAAGTATCGGCTCTACTTGAGTAGGCTGCAAAAGGAAAATGACCTTAAATCTTCTTTTGGCGGGATGAATCATTCTGATTATGCCGCAAAAGATCCTCAAGGAATCTTTGGTCTTCAGAACTCGATCAGCATTCCACAAAATGATGTTACAAATGGCAGCTACAGATTTTCTGGCAATAACTTGGTTGCTCCGACTGTGGTGGATCCAAAGAGAGTTGAAGATGATGTAAAGGGAATTATTCCGGAGCCTGTAGCAGAACCCAAGAGAGGTTCGACTCGCAGTATTCCTGATTCTCACAAGACGAACTTAAGTCATTCTTATGCAGAAACCAAGAAAGGCTTGATTGGTAATGTTGCTGATTCTCTGAAGATCAGGAGTTCACAGATGGGAGTCAATCATTCATTTGCATCAGTGGAATCTGAAATAAACTTCACTATACCAACAAAGTATTCTTGGATTGAAGCTCAAATGAAACAAGAGCACAAGCCGGTTGTTCAGTTAGATAATGGCTTCAACAAGCCACAACCGCCTGGTGTACAGCACCACCTCCAAGCTGATCTACTACAGCCAATTCCTTCCATTAGTTCAAGACAGCCAATTCCTTCCATTAGTTCAAGACCATCCATCTTAGATGAAGAAACAAATCGTCCCATTAAGAATAAGCCTTCACAAGCTGCGTACAGAAACAGTCACATTAGCCATGTAAGTCCAACAATAACTGCAGCAGACTCCTTTTCAGAACAGACCAAGAGCTGTGTGGTGGACCAAGGTTTTGACCCCAGTTCCAGCTGTTTATCAAACATGAAAAACCAGGGCTTCAATCTGAGTTGCCTTACTAATTTCGAACCTGTCCAAAAGAACCTATTCTTTGGAAGTGGGTCATCTTTTGCTTCTTTGGAGGACGAGTTGCAAATTTGTTTGTATCCAGCTGATTATTTTGGTATGAACCTTGGGGTTTCGGAGTATAATGATCCTGAAGTTCCTGCTCACTTGTATGAGGCAATGAGATTTGGCTGTGAGTATCCATGTGAGTCATCGGAATATCCTCTGGCAGATCAGAGTCTTTTCATAGCATAA

Protein Analysis

535

Amino Acids

59.93

Weight (kDa)

6.0

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 1 - 56 6e-09 Response regulator receiver domain
Myb_DNA-binding PF00249 130 - 180 7.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 772
AciI CCGC 4 cut(s) 431, 591, 615, 1058
AclWI GGATC 6 cut(s) 60, 268, 617, 728, 741, 1496
AcsI RAATTY 2 cut(s) 419, 1443
AcuI CTGAAG 4 cut(s) 169, 629, 917, 1527
AfaI GTAC 2 cut(s) 1068, 1211
AfiI CCNNNNNNNGG 1 cut(s) 797
AflII CTTAAG 2 cut(s) 137, 838
AgsI TTSAA 7 cut(s) 113, 749, 992, 1045, 1119, 1146, 1351
AjnI CCWGG 3 cut(s) 494, 1060, 1341
AjuI GAANNNNNNNTTGG 2 cut(s) 964, 996
AluBI AGCT 9 cut(s) 247, 386, 690, 995, 1085, 1205, 1284, 1320, 1460
AluI AGCT 9 cut(s) 247, 386, 690, 995, 1085, 1205, 1284, 1320, 1460
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 6 cut(s) 60, 268, 617, 728, 741, 1496
Ama87I CYCGRG 1 cut(s) 29
Aor13HI TCCGGA 1 cut(s) 772
ApeKI GCWGC 5 cut(s) 175, 556, 687, 1205, 1253
ApoI RAATTY 2 cut(s) 419, 1443
ArsI GACNNNNNNTTYG 4 cut(s) 341, 373, 1286, 1318
Asp700I GAANNNNTTC 1 cut(s) 1394
AspS9I GGNCC 2 cut(s) 461, 1294
AsuHPI GGTGA 1 cut(s) 374
AsuII TTCGAA 1 cut(s) 1374
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 2 cut(s) 461, 1294
BaeGI GKGCMC 1 cut(s) 495
BamHI GGATCC 1 cut(s) 733
BanI GGYRCC 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 175, 635
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 5 cut(s) 187, 543, 699, 1192, 1265
BccI CCATC 7 cut(s) 8, 43, 74, 272, 910, 1159, 1163
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 3 cut(s) 496, 1062, 1343
BciVI GTATCC 3 cut(s) 275, 1464, 1563
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 4 cut(s) 691, 780, 1094, 1251
BfrI CTTAAG 2 cut(s) 137, 838
BfuI GTATCC 3 cut(s) 275, 1464, 1563
BglII AGATCT 1 cut(s) 265
BisI GCNGC 6 cut(s) 176, 557, 615, 688, 1206, 1254
BlsI GCNGC 6 cut(s) 177, 558, 616, 689, 1207, 1255
Bme1390I CCNGG 3 cut(s) 496, 1062, 1343
Bme18I GGWCC 2 cut(s) 461, 1294
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 461, 1294
BmiI GGNNCC 3 cut(s) 295, 735, 777
BmrFI CCNGG 3 cut(s) 496, 1062, 1343
BmrI ACTGGG 1 cut(s) 1305
BmsI GCATC 3 cut(s) 240, 445, 947
BmuI ACTGGG 1 cut(s) 1305
BpiI GAAGAC 2 cut(s) 175, 635
Bpu14I TTCGAA 1 cut(s) 1374
BpuEI CTTGAG 3 cut(s) 65, 568, 612
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 5 cut(s) 289, 494, 1297, 1342, 1480
BsaWI WCCGGW 1 cut(s) 772
BsaXI ACNNNNNCTCC 2 cut(s) 1421, 1451
Bsc4I CCNNNNNNNGG 1 cut(s) 797
Bse118I RCCGGY 1 cut(s) 1018
Bse1I ACTGG 1 cut(s) 1311
Bse3DI GCAATG 1 cut(s) 1539
Bse8I GATNNNNATC 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 772
BseBI CCWGG 3 cut(s) 496, 1062, 1343
BseDI CCNNGG 5 cut(s) 289, 494, 1297, 1342, 1480
BseGI GGATG 3 cut(s) 19, 600, 1151
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 797
BseMI GCAATG 1 cut(s) 1539
BseMII CTCAG 1 cut(s) 1346
BseNI ACTGG 1 cut(s) 1311
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 5 cut(s) 187, 543, 699, 1192, 1265
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 1014
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 2 cut(s) 773, 1019
BslFI GGGAC 1 cut(s) 1164
BslI CCNNNNNNNGG 1 cut(s) 797
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 1164
BsmI GAATGC 1 cut(s) 660
BsoBI CYCGRG 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 1374
Bsp1286I GDGCHC 2 cut(s) 495, 1014
Bsp13I TCCGGA 1 cut(s) 772
Bsp1407I TGTACA 1 cut(s) 1066
BspACI CCGC 4 cut(s) 431, 591, 615, 1058
BspCNI CTCAG 1 cut(s) 1347
BspEI TCCGGA 1 cut(s) 772
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 295, 735, 777
BspMAI CTGCAG 1 cut(s) 1255
BspPI GGATC 6 cut(s) 60, 268, 617, 728, 741, 1496
BspT104I TTCGAA 1 cut(s) 1374
BspT107I GGYRCC 1 cut(s) 293
BspTI CTTAAG 2 cut(s) 137, 838
BsrDI GCAATG 1 cut(s) 1539
BsrFI RCCGGY 1 cut(s) 1018
BsrGI TGTACA 1 cut(s) 1066
BsrI ACTGG 1 cut(s) 1311
BssAI RCCGGY 1 cut(s) 1018
BssECI CCNNGG 5 cut(s) 289, 494, 1297, 1342, 1480
BssT1I CCWWGG 3 cut(s) 289, 1297, 1480
Bst2UI CCWGG 3 cut(s) 496, 1062, 1343
Bst4CI ACNGT 3 cut(s) 239, 727, 1220
BstAFI CTTAAG 2 cut(s) 137, 838
BstAUI TGTACA 1 cut(s) 1066
BstBI TTCGAA 1 cut(s) 1374
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 2 cut(s) 1159, 1355
BstF5I GGATG 3 cut(s) 19, 600, 1151
BstMAI GTCTC 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 1057
BstNI CCWGG 3 cut(s) 496, 1062, 1343
BstNSI RCATGY 3 cut(s) 38, 126, 182
BstSCI CCNGG 3 cut(s) 494, 1060, 1341
BstSFI CTRYAG 4 cut(s) 691, 780, 1094, 1251
BstSLI GKGCMC 1 cut(s) 495
BstV1I GCAGC 5 cut(s) 187, 543, 699, 1192, 1265
BstV2I GAAGAC 2 cut(s) 175, 635
BstX2I RGATCY 4 cut(s) 52, 265, 622, 733
BstYI RGATCY 4 cut(s) 52, 265, 622, 733
BsuI GTATCC 3 cut(s) 275, 1464, 1563
BtsCI GGATG 3 cut(s) 19, 600, 1151
BtsIMutI CAGTG 1 cut(s) 948
Cac8I GCNNGC 1 cut(s) 520
CciI TCATGA 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 1018
Cfr13I GGNCC 2 cut(s) 461, 1294
Csp6I GTAC 2 cut(s) 1067, 1210
CviQI GTAC 2 cut(s) 1067, 1210
DdeI CTNAG 2 cut(s) 1159, 1355
DraI TTTAAA 1 cut(s) 22
Eco130I CCWWGG 3 cut(s) 289, 1297, 1480
Eco47I GGWCC 2 cut(s) 461, 1294
Eco57I CTGAAG 4 cut(s) 169, 629, 917, 1527
Eco88I CYCGRG 1 cut(s) 29
EcoRII CCWGG 3 cut(s) 494, 1060, 1341
EcoT14I CCWWGG 3 cut(s) 289, 1297, 1480
ErhI CCWWGG 3 cut(s) 289, 1297, 1480
FalI AAGNNNNNCTT 6 cut(s) 821, 853, 832, 864, 854, 886
FaqI GGGAC 1 cut(s) 1164
FauI CCCGC 1 cut(s) 584
FauNDI CATATG 1 cut(s) 170
Fnu4HI GCNGC 6 cut(s) 176, 557, 615, 688, 1206, 1254
FokI GGATG 3 cut(s) 26, 607, 1138
Fsp4HI GCNGC 6 cut(s) 176, 557, 615, 688, 1206, 1254
FspBI CTAG 1 cut(s) 387
GluI GCNGC 6 cut(s) 176, 557, 615, 688, 1206, 1254
HapII CCGG 2 cut(s) 773, 1019
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HpaII CCGG 2 cut(s) 773, 1019
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 4 cut(s) 501, 911, 1067, 1294
Hpy188III TCNNGA 9 cut(s) 29, 224, 315, 773, 818, 904, 1119, 1146, 1505
Hpy8I GTNNAC 4 cut(s) 501, 911, 1067, 1294
Hpy99I CGWCG 2 cut(s) 239, 302
HpyAV CCTTC 3 cut(s) 1116, 1143, 1206
HpyCH4III ACNGT 3 cut(s) 239, 727, 1220
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 8 cut(s) 436, 518, 529, 559, 854, 938, 1253, 1441
HpyF10VI GCNNNNNNNGC 1 cut(s) 1057
HpyF3I CTNAG 2 cut(s) 1159, 1355
HpySE526I ACGT 1 cut(s) 489
Kpn2I TCCGGA 1 cut(s) 772
LmnI GCTCC 3 cut(s) 119, 724, 775
Lsp1109I GCAGC 5 cut(s) 187, 543, 699, 1192, 1265
LweI GCATC 3 cut(s) 240, 445, 947
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 676, 1220
MflI RGATCY 4 cut(s) 52, 265, 622, 733
MhlI GDGCHC 2 cut(s) 495, 1014
MluCI AATT 6 cut(s) 419, 765, 1101, 1128, 1369, 1443
MlyI GAGTC 5 cut(s) 799, 930, 1253, 1571, 1600
MmeI TCCRAC 3 cut(s) 19, 746, 1265
MnlI CCTC 8 cut(s) 211, 314, 636, 791, 1088, 1423, 1522, 1587
MroI TCCGGA 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 1394
MseI TTAA 5 cut(s) 21, 138, 576, 839, 1185
MslI CAYNNNNRTG 2 cut(s) 849, 1524
MspA1I CMGCKG 3 cut(s) 247, 1320, 1460
MspCI CTTAAG 2 cut(s) 137, 838
MspI CCGG 2 cut(s) 773, 1019
MspR9I CCNGG 3 cut(s) 496, 1062, 1343
Mva1269I GAATGC 1 cut(s) 660
MvaI CCWGG 3 cut(s) 496, 1062, 1343
MwoI GCNNNNNNNGC 1 cut(s) 1057
NdeI CATATG 1 cut(s) 170
NlaIV GGNNCC 3 cut(s) 295, 735, 777
NmuCI GTSAC 1 cut(s) 1220
NspI RCATGY 3 cut(s) 38, 126, 182
NspV TTCGAA 1 cut(s) 1374
PaeR7I CTCGAG 1 cut(s) 29
PagI TCATGA 1 cut(s) 223
PctI GAATGC 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 1394
PfeI GAWTC 6 cut(s) 365, 598, 633, 821, 890, 947
PkrI GCNGC 6 cut(s) 177, 558, 616, 689, 1207, 1255
PleI GAGTC 5 cut(s) 799, 929, 1253, 1570, 1599
PpsI GAGTC 5 cut(s) 799, 929, 1253, 1570, 1599
Psp6I CCWGG 3 cut(s) 494, 1060, 1341
PspGI CCWGG 3 cut(s) 494, 1060, 1341
PspN4I GGNNCC 3 cut(s) 295, 735, 777
PspPI GGNCC 2 cut(s) 461, 1294
PstI CTGCAG 1 cut(s) 1255
PsuI RGATCY 4 cut(s) 52, 265, 622, 733
PvuII CAGCTG 3 cut(s) 247, 1320, 1460
RsaI GTAC 2 cut(s) 1068, 1211
RsaNI GTAC 2 cut(s) 1067, 1210
RseI CAYNNNNRTG 2 cut(s) 849, 1524
SaqAI TTAA 5 cut(s) 21, 138, 576, 839, 1185
SatI GCNGC 6 cut(s) 176, 557, 615, 688, 1206, 1254
Sau96I GGNCC 2 cut(s) 461, 1294
SchI GAGTC 5 cut(s) 799, 930, 1253, 1571, 1600
ScrFI CCNGG 3 cut(s) 496, 1062, 1343
SduI GDGCHC 2 cut(s) 495, 1014
SfaNI GCATC 3 cut(s) 240, 445, 947
SfcI CTRYAG 4 cut(s) 691, 780, 1094, 1251
Sfr274I CTCGAG 1 cut(s) 29
SfuI TTCGAA 1 cut(s) 1374
SinI GGWCC 2 cut(s) 461, 1294
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 849, 1524
SmlI CTYRAG 6 cut(s) 29, 44, 137, 547, 627, 838
SmoI CTYRAG 6 cut(s) 29, 44, 137, 547, 627, 838
Sse9I AATT 6 cut(s) 419, 765, 1101, 1128, 1369, 1443
SsiI CCGC 4 cut(s) 431, 591, 615, 1058
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 494, 1060, 1341
StyI CCWWGG 3 cut(s) 289, 1297, 1480
TaaI ACNGT 3 cut(s) 239, 727, 1220
TaiI ACGT 1 cut(s) 492
TaqI TCGA 7 cut(s) 30, 234, 314, 333, 653, 803, 1374
TasI AATT 6 cut(s) 419, 765, 1101, 1128, 1369, 1443
TatI WGTACW 1 cut(s) 1066
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 6 cut(s) 365, 598, 633, 821, 890, 947
Tru1I TTAA 5 cut(s) 21, 138, 576, 839, 1185
Tru9I TTAA 5 cut(s) 21, 138, 576, 839, 1185
TscAI CASTG 1 cut(s) 948
TseFI GTSAC 1 cut(s) 1220
TseI GCWGC 5 cut(s) 175, 556, 687, 1205, 1253
Tsp45I GTSAC 1 cut(s) 1220
TspRI CASTG 1 cut(s) 948
Vha464I CTTAAG 2 cut(s) 137, 838
VpaK11BI GGWCC 2 cut(s) 461, 1294
XapI RAATTY 2 cut(s) 419, 1443
XceI RCATGY 3 cut(s) 38, 126, 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 1285
XhoI CTCGAG 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 1394
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.