Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Forward (+)

9766651 .. 9767904

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCATATGAGCAACGGCATGCGATCGATGTCAACAGCTAGTTCGAGTGGAGCTTGGAAATCGGGGGATGTGGTCACTGACCAGTTTCCTGCGGGACTAAGAGTCCTTGTGGTCGACGATGATCCAACTTGCCTTATGATCTTGGAGAGGATGCTCAGAACTTGCCTCTATGAAGTGACAAAATGTAATCGTGCGGAGATCGCACTTTCGCTGCTTCGAGAGAACCAGAACGGATTCGATATTGTTATCAGTGATGTGCACATGCCAGACATGGATGGATTCAAACTCCTAGAGCACGTTGGACTGGAGATGGACCTGCCTGTTATCATGATGTCTGCCGATGATGGAAAAAGTGTTGTTATGAAGGGTGTGACTCATGGTGCTTGTGATTACCTAATCAAACCGGTTCGCATTGAGGCGCTGAAGAACATATGGCAGCATGTAGTGCGGAAGAAAAAGAATGAGTGGAAGGATGTGGAGCAATCTGGAAGTGTGGAAGAAGCGGGGATCGGCAGCAGAAACCATCCGAAGATTCAGATTACTCGTCCTCGGCAAATGAAGGGACTTGGAAGAACTCAAAGAGGAGGAAGGATGAGGATGAAGAGACGGATGAGAGGGATGAATTCGAATTTTTTTCTGCGGTCTCGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090693 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

218

Amino Acids

24.59

Weight (kDa)

9.62

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	5 cut(s)	92, 194, 448, 503, 640
AclWI	GGATC	2 cut(s)	116, 515
AcsI	RAATTY	2 cut(s)	622, 628
AcuI	CTGAAG	1 cut(s)	443
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	283
AhdI	GACNNNNNGTC	1 cut(s)	101
AluBI	AGCT	2 cut(s)	38, 53
AluI	AGCT	2 cut(s)	38, 53
Alw21I	GWGCWC	2 cut(s)	261, 297
Alw26I	GTCTC	2 cut(s)	598, 648
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	116, 515
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	3 cut(s)	211, 436, 513
ApoI	RAATTY	2 cut(s)	622, 628
AsiGI	ACCGGT	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	261
Bbv12I	GWGCWC	2 cut(s)	261, 297
BbvI	GCAGC	3 cut(s)	198, 448, 525
BccI	CCATC	4 cut(s)	269, 304, 338, 531
BceAI	ACGGC	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	598, 648
BfaI	CTAG	2 cut(s)	39, 290
BfoI	RGCGCY	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	324
BisI	GCNGC	3 cut(s)	212, 437, 514
BlsI	GCNGC	3 cut(s)	213, 438, 515
Bme18I	GGWCC	1 cut(s)	313
BmeRI	GACNNNNNGTC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	313
BmsI	GCATC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	626
Bsa29I	ATCGAT	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	82, 309
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	9 cut(s)	73, 156, 280, 478, 523, 597, 603, 615, 624
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	2 cut(s)	82, 309
BseRI	GAGGAG	1 cut(s)	597
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	198, 448, 525
Bsh1285I	CGRYCG	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	403
BshVI	ATCGAT	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	261, 297
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	2 cut(s)	108, 576
BsmAI	GTCTC	2 cut(s)	598, 648
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	2 cut(s)	108, 576
Bso31I	GGTCTC	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	261, 297
Bsp143I	GATC	5 cut(s)	23, 121, 138, 198, 507
BspACI	CCGC	5 cut(s)	92, 194, 448, 503, 640
BspCNI	CTCAG	1 cut(s)	168
BspDI	ATCGAT	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	116, 515
BspT104I	TTCGAA	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	82, 309
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	5 cut(s)	23, 121, 138, 198, 507
Bst6I	CTCTTC	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	98, 155
BstF5I	GGATG	9 cut(s)	73, 156, 280, 478, 523, 597, 603, 615, 624
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	5 cut(s)	26, 124, 141, 201, 510
BstMAI	GTCTC	2 cut(s)	598, 648
BstMBI	GATC	5 cut(s)	23, 121, 138, 198, 507
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 445
BstNSI	RCATGY	3 cut(s)	22, 265, 443
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	198, 448, 525
Bsu15I	ATCGAT	1 cut(s)	26
BsuTUI	ATCGAT	1 cut(s)	26
BtsCI	GGATG	9 cut(s)	73, 156, 280, 478, 523, 597, 603, 615, 624
BtsIMutI	CAGTG	2 cut(s)	75, 256
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	26
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	6 cut(s)	19, 262, 271, 328, 377, 440
CviJI	RGCY	2 cut(s)	38, 53
CviKI_1	RGCY	2 cut(s)	38, 53
DdeI	CTNAG	2 cut(s)	98, 155
DpnI	GATC	5 cut(s)	25, 123, 140, 200, 509
DpnII	GATC	5 cut(s)	23, 121, 138, 198, 507
DriI	GACNNNNNGTC	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	596
Eam1105I	GACNNNNNGTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	596
Eco31I	GGTCTC	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	622
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	6 cut(s)	22, 265, 274, 331, 380, 443
FaqI	GGGAC	2 cut(s)	108, 576
FatI	CATG	6 cut(s)	18, 261, 270, 327, 376, 439
FauI	CCCGC	2 cut(s)	85, 496
FauNDI	CATATG	2 cut(s)	6, 431
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	212, 437, 514
FokI	GGATG	9 cut(s)	80, 163, 287, 485, 510, 604, 610, 622, 631
Fsp4HI	GCNGC	3 cut(s)	212, 437, 514
FspBI	CTAG	2 cut(s)	39, 290
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	3 cut(s)	212, 437, 514
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	422
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	6 cut(s)	22, 265, 274, 331, 380, 443
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	2 cut(s)	33, 115
HindII	GTYRAC	2 cut(s)	33, 115
HinfI	GANTC	5 cut(s)	102, 234, 279, 373, 532
HpaII	CCGG	1 cut(s)	404
Hpy166II	GTNNAC	3 cut(s)	33, 115, 259
Hpy188I	TCNGA	3 cut(s)	158, 528, 537
Hpy188III	TCNNGA	3 cut(s)	218, 328, 486
Hpy8I	GTNNAC	3 cut(s)	33, 115, 259
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	358, 463, 553, 582
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	4, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 445
HpyF3I	CTNAG	2 cut(s)	98, 155
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	6 cut(s)	22, 265, 274, 331, 380, 443
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	5 cut(s)	23, 121, 138, 198, 507
LmnI	GCTCC	2 cut(s)	50, 478
LpnPI	CCDG	9 cut(s)	95, 102, 239, 279, 290, 329, 333, 417, 471
Lsp1109I	GCAGC	3 cut(s)	198, 448, 525
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	39, 290
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	73, 175, 370
MalI	GATC	5 cut(s)	25, 123, 140, 200, 509
MboI	GATC	5 cut(s)	23, 121, 138, 198, 507
MboII	GAAGA	6 cut(s)	436, 463, 509, 541, 582, 613
MhlI	GDGCHC	2 cut(s)	261, 297
MluCI	AATT	2 cut(s)	622, 628
MlyI	GAGTC	2 cut(s)	111, 367
MmeI	TCCRAC	2 cut(s)	149, 280
MnlI	CCTC	8 cut(s)	141, 176, 409, 558, 575, 578, 588, 608
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	233
MspI	CCGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	200, 445
NdeI	CATATG	2 cut(s)	6, 431
NdeII	GATC	5 cut(s)	23, 121, 138, 198, 507
NlaIII	CATG	6 cut(s)	22, 265, 274, 331, 380, 443
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	3 cut(s)	73, 175, 370
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	22, 265, 443
NspV	TTCGAA	1 cut(s)	626
PaeI	GCATGC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	234, 279, 532
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	213, 438, 515
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	2 cut(s)	110, 367
PpsI	GAGTC	2 cut(s)	110, 367
PspPI	GGNCC	1 cut(s)	313
PvuI	CGATCG	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	3 cut(s)	212, 437, 514
Sau3AI	GATC	5 cut(s)	23, 121, 138, 198, 507
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	2 cut(s)	111, 367
SduI	GDGCHC	2 cut(s)	261, 297
SetI	ASST	5 cut(s)	40, 55, 300, 318, 396
SfaNI	GCATC	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	626
SinI	GGWCC	1 cut(s)	313
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	2 cut(s)	622, 628
SsiI	CCGC	5 cut(s)	92, 194, 448, 503, 640
SspMI	CTAG	2 cut(s)	39, 290
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	6 cut(s)	26, 44, 114, 217, 237, 626
TasI	AATT	2 cut(s)	622, 628
TfiI	GAWTC	3 cut(s)	234, 279, 532
TscAI	CASTG	2 cut(s)	82, 256
TseFI	GTSAC	3 cut(s)	73, 175, 370
TseI	GCWGC	3 cut(s)	211, 436, 513
Tsp45I	GTSAC	3 cut(s)	73, 175, 370
TspDTI	ATGAA	5 cut(s)	186, 377, 572, 614, 635
TspGWI	ACGGA	2 cut(s)	246, 622
TspRI	CASTG	2 cut(s)	82, 256
VneI	GTGCAC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	2 cut(s)	622, 628
XceI	RCATGY	3 cut(s)	22, 265, 443
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	2 cut(s)	39, 290
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.