Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Reverse (-)

42635119 .. 42636482

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0253400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCCAAGGACAGAGCAGAAGAGTTAAGCGAAGACGAAAAGAGGGCCTTAAGAGGCAGCAAATTCGCTCCCCTCCCATCTTTACCGCCTCCTCGATCCCAACCCAGGTTGGCTCATCCAGGGGGTCCGTTGACGACGAACAAGGCGGCGGCGTTGGCGAAATTTCTAGAAAGAAAGCTGCAGGATCCGGATGGATTGGGCACCATGAATCCACAGCTAGTTGAACGCGCTGTTCAGAACGCAAAACGCACCGTTTTCGCAAGTGCAGCTTCTAATTCTCAAGGAAGAATACGACATGTCAACTCCTTCGGTGACTCTGAGTCTGAGGACCCTCTTCAGCAAGAAGAAGAAGAAAATGTGGGAAACTCTGAGCCCAAAAAGAATAAAAAGAATAAGAAGAAGAAGAAGAAGAACAAGCAAAAGATAGTGGAGGACATTGGGGGTGCTGTGGTAAAAAAGCCGAAGAAGAAGAAGTTAAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

10.06

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	3 cut(s)	86, 146, 149
AclWI	GGATC	3 cut(s)	90, 179, 192
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	62, 161
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflII	CTTAAG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	224
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	104, 118
AluBI	AGCT	3 cut(s)	178, 217, 269
AluI	AGCT	3 cut(s)	178, 217, 269
AlwI	GGATC	3 cut(s)	90, 179, 192
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	3, 45
ApeKI	GCWGC	3 cut(s)	57, 178, 266
ApoI	RAATTY	2 cut(s)	62, 161
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	45, 125, 328
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	125, 328
BaeGI	GKGCMC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	69, 165, 278
BccI	CCATC	2 cut(s)	85, 185
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 238, 272
BciT130I	CCWGG	2 cut(s)	106, 120
BfaI	CTAG	2 cut(s)	167, 218
BfmI	CTRYAG	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	49
BisI	GCNGC	5 cut(s)	58, 147, 150, 179, 267
BlsI	GCNGC	5 cut(s)	59, 148, 151, 180, 268
Bme1390I	CCNGG	2 cut(s)	106, 120
Bme18I	GGWCC	2 cut(s)	125, 328
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmgT120I	GGNCC	3 cut(s)	45, 125, 328
BmiI	GGNNCC	4 cut(s)	126, 186, 202, 330
BmrFI	CCNGG	2 cut(s)	106, 120
BpiI	GAAGAC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	6, 104, 119
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	106, 120
BseDI	CCNNGG	3 cut(s)	6, 104, 119
BseGI	GGATG	2 cut(s)	115, 196
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	3 cut(s)	309, 315, 360
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	69, 165, 278
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	5, 47
BshNI	GGYRCC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	105
BsnI	GGCC	2 cut(s)	5, 47
Bsp1286I	GDGCHC	2 cut(s)	203, 375
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	95, 184
BspACI	CCGC	3 cut(s)	86, 146, 149
BspANI	GGCC	2 cut(s)	5, 47
BspCNI	CTCAG	3 cut(s)	310, 316, 361
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	4 cut(s)	126, 186, 202, 330
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	3 cut(s)	90, 179, 192
BspT107I	GGYRCC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	6, 104, 119
BssMI	GATC	2 cut(s)	95, 184
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	106, 120
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	2 cut(s)	15, 339
BstAFI	CTTAAG	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	318, 324, 369
BstF5I	GGATG	2 cut(s)	115, 196
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	98, 187
BstMBI	GATC	2 cut(s)	95, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 266
BstNI	CCWGG	2 cut(s)	106, 120
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	104, 118
BstSFI	CTRYAG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	203
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	3 cut(s)	69, 165, 278
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	5, 47
BtsCI	GGATG	2 cut(s)	115, 196
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	45, 125, 328
CviAII	CATG	2 cut(s)	205, 296
CviJI	RGCY	8 cut(s)	5, 47, 113, 178, 217, 269, 373, 460
CviKI_1	RGCY	8 cut(s)	5, 47, 113, 178, 217, 269, 373, 460
DdeI	CTNAG	3 cut(s)	318, 324, 369
DpnI	GATC	2 cut(s)	97, 186
DpnII	GATC	2 cut(s)	95, 184
DriI	GACNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	15, 339
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	2 cut(s)	15, 339
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	125, 328
Eco57I	CTGAAG	1 cut(s)	320
EcoO109I	RGGNCCY	2 cut(s)	45, 328
EcoRII	CCWGG	2 cut(s)	104, 118
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	208, 299
FaiI	YATR	2 cut(s)	206, 297
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 253, 285
FatI	CATG	2 cut(s)	204, 295
Fnu4HI	GCNGC	5 cut(s)	58, 147, 150, 179, 267
FokI	GGATG	2 cut(s)	102, 203
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	5 cut(s)	58, 147, 150, 179, 267
FspBI	CTAG	2 cut(s)	167, 218
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	5 cut(s)	58, 147, 150, 179, 267
HaeIII	GGCC	2 cut(s)	5, 47
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	208, 299
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	2 cut(s)	132, 301
HindII	GTYRAC	2 cut(s)	132, 301
HinfI	GANTC	3 cut(s)	208, 314, 320
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	132, 301
Hpy188I	TCNGA	4 cut(s)	237, 319, 325, 370
Hpy188III	TCNNGA	2 cut(s)	167, 188
Hpy8I	GTNNAC	2 cut(s)	132, 301
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	2 cut(s)	181, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 266
HpyF3I	CTNAG	3 cut(s)	318, 324, 369
Hsp92II	CATG	2 cut(s)	208, 299
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	95, 184
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	91, 105, 118, 132, 167, 201
Lsp1109I	GCAGC	3 cut(s)	69, 165, 278
MaeI	CTAG	2 cut(s)	167, 218
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	97, 186
MboI	GATC	2 cut(s)	95, 184
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	203, 375
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	62, 161, 274, 479
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	308, 329
MnlI	CCTC	8 cut(s)	36, 47, 83, 99, 102, 319, 342, 424
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	26, 50, 476
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	106, 120
MvaI	CCWGG	2 cut(s)	106, 120
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	155, 266
NdeII	GATC	2 cut(s)	95, 184
NlaIII	CATG	2 cut(s)	208, 299
NlaIV	GGNNCC	4 cut(s)	126, 186, 202, 330
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	299
PciI	ACATGT	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	59, 148, 151, 180, 268
PleI	GAGTC	2 cut(s)	308, 328
PpsI	GAGTC	2 cut(s)	308, 328
PpuMI	RGGWCCY	1 cut(s)	328
PscI	ACATGT	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	104, 118
PspGI	CCWGG	2 cut(s)	104, 118
PspN4I	GGNNCC	4 cut(s)	126, 186, 202, 330
PspPI	GGNCC	3 cut(s)	45, 125, 328
PspPPI	RGGWCCY	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	26, 50, 476
SatI	GCNGC	5 cut(s)	58, 147, 150, 179, 267
Sau3AI	GATC	2 cut(s)	95, 184
Sau96I	GGNCC	3 cut(s)	45, 125, 328
SchI	GAGTC	2 cut(s)	308, 329
ScrFI	CCNGG	2 cut(s)	106, 120
SduI	GDGCHC	2 cut(s)	203, 375
SetI	ASST	4 cut(s)	110, 180, 219, 271
SfcI	CTRYAG	1 cut(s)	179
SinI	GGWCC	2 cut(s)	125, 328
SmlI	CTYRAG	2 cut(s)	49, 279
SmoI	CTYRAG	2 cut(s)	49, 279
Sse9I	AATT	4 cut(s)	62, 161, 274, 479
SsiI	CCGC	3 cut(s)	86, 146, 149
SspMI	CTAG	2 cut(s)	167, 218
StyD4I	CCNGG	2 cut(s)	104, 118
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	1 cut(s)	94
TasI	AATT	4 cut(s)	62, 161, 274, 479
TauI	GCSGC	2 cut(s)	149, 152
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	26, 50, 476
Tru9I	TTAA	3 cut(s)	26, 50, 476
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	57, 178, 266
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	125, 328
XapI	RAATTY	2 cut(s)	62, 161
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	2 cut(s)	167, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.