Prupe.1G238200_v2.0.a1
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
25287276 .. 25293404
6129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G238200.1

Sequence Viewer

Length: 1851 bp
ATGGAGAGTAGCTTCTCTTCTCCTCGAAACGATTCGTTTCCGGCTGGCCTCCGAGTTCTCGTCGTCGATGATGATCCAACTTGGCTTAAGATCTTAGAGAAGATGCTCAAGAAGTGCTCCTATGAAGTGACTACATGTGGTTTGGCAAGAGATGCTTTAAACTTGCTTCGTGAAAAGAAAGATGGATATGACATTGTAGTCAGTGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTTATCATGATGTCTGTTGATGGAGAAACGAGTAGGGTAATGAAAGGTGTTCAGCACGGAGCATGTGATTATCTTCTTAAGCCAATAAGAATGAAAGAACTGCGTAATATATGGCAGCATGTATTCAGAAAGAAGATACATGAGATCAGAGACATTGAGAGTCACGAAAGCATTGAAGGTATTCAGCTGATAAGAAATGGATCAGATCAGTATGATGAGGGATACTTTTTTAGTGCAGAAGACCTTACTTCATCGAGAAAAAGAAAGGATGTTGATAACAAATATGATGACAAAGACTTTTCTGATTGTTCATCCGCAAAAAAAGCTAGAGTTGTTTGGTCTGTAGACCTTCATCAGAAATTTGTAAAAGCAGTACATCAGATTGGATTTGACAAAGTTGGTCCGAAGAAGATACTTGACCTGATGAACGTGCCTTGGTTGACAAGAGAAAATGTTGCTAGCCACTTGCAGAAGTACCGGCTCTACTTGAGTAGGCTGCAAAAAGAAAATGATATTAAATCTTCTTTTGGTGGGACAAAGCATTCTGATTATTCCTCAAAAGATCTTCAAGGAATTCTTAGCGTTCAGAACTCGATCAACATCCAACAAAATGATGTTGCACATGGAAGCTACAGATTTTCTGGCAATAATTTAGTTGCTCAGAATGCGGATCCAAAGAGCAATGAAGGAGATATAAAGGGGATTGTTTCAGAGCCTGTAGCAGAACCTAAGAAAGGAACGACTGGCAATATTCCTGATTCTCAGAAGACAAGGAGTTCACAAATGGACTTCAATAGTTCTTATGCAGAAACCCAAAAAGGTTTGGTTGGAAACGTTCCCGATTCCCAGAAGATCAGGAGTTCACAGATGCGCGTCAATCATTCTTTTGCATCAGTGGAATCTGAAGTAAACTTGACAGCATTTGATTCCACCATCCCAGCGACGTATTCTTGGAATAAAATTCAATTGGAAAAAGAGCACAAGCCACTTATTCAGTTAAACAATGGCTTCAGCAAGCCTCAACTGCCTGGTCCACAGCACCATTTCCAAGCTGATCAACTACAATCAATTCCTTCCATTAGCTCAAGACCTTCAATCCCAGGGGGAGATGTAACTGGCTCCAGTAAGAGTAAGCCTTCGTATTCGGAGTACACAAACCATCATGGTAGCCATGTAAGTCCAACAATAAGTCCAACAATAAGTGCAACTGACTCTTTTCCTGGTCAAACCAAGAGCTGTGTGGTAGACCATCAACTTTCTGAGACCATTTCCACTAGTACATCAAACATGAAAAATCAGGGCATCAACCTGAGTACTGATTTGGAATCTGCCCAAAGAAACCTAATCTTGGGAAGTACATCACCTTTTGCTTCTTTGGACGATGAGTTTCAGATTTGCTGGTATCAAGGTGATTGTTATGGTATGAATCTTGAACTTCAAAATGTAGAGTTCTCGGAGTATACTGATCCTACTCATGTTACTGAAGTTCCTGCTCACCTGTATGATGCACTGAGATTTGAATATCCATGTGACCCATCAGAATATTCTGTCCTAGATCAAGGTCTGTTCATTGCATGA

Protein Analysis

617

Amino Acids

69.02

Weight (kDa)

5.7

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccI GTMKAC 3 cut(s) 618, 1518, 1733
AccII CGCG 1 cut(s) 1146
AciI CCGC 2 cut(s) 588, 941
AclI AACGTT 1 cut(s) 1107
AclWI GGATC 6 cut(s) 68, 273, 481, 938, 951, 1733
AcsI RAATTY 3 cut(s) 632, 846, 1233
AcuI CTGAAG 3 cut(s) 1197, 1267, 1776
AfaI GTAC 6 cut(s) 648, 749, 1424, 1552, 1588, 1630
AfiI CCNNNNNNNGG 2 cut(s) 1007, 1621
AflII CTTAAG 2 cut(s) 86, 350
AflIII ACRYGT 1 cut(s) 134
AgsI TTSAA 8 cut(s) 449, 842, 1066, 1238, 1368, 1706, 1712, 1793
AhlI ACTAGT 1 cut(s) 1547
AjnI CCWGG 3 cut(s) 1300, 1372, 1492
AluBI AGCT 7 cut(s) 12, 460, 599, 903, 1325, 1356, 1509
AluI AGCT 7 cut(s) 12, 460, 599, 903, 1325, 1356, 1509
Alw21I GWGCWC 2 cut(s) 119, 1254
Alw26I GTCTC 2 cut(s) 417, 1529
AlwI GGATC 6 cut(s) 68, 273, 481, 938, 951, 1733
AlwNI CAGNNNCTG 1 cut(s) 989
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 388, 769
ApoI RAATTY 3 cut(s) 632, 846, 1233
Asp700I GAANNNNTTC 2 cut(s) 31, 453
AspLEI GCGC 1 cut(s) 1146
AspS9I GGNCC 2 cut(s) 674, 1304
AsuHPI GGTGA 3 cut(s) 1626, 1694, 1760
AsuNHI GCTAGC 1 cut(s) 731
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 2 cut(s) 674, 1304
BamHI GGATCC 1 cut(s) 943
BarI GAAGNNNNNNTAC 1 cut(s) 33
BbsI GAAGAC 2 cut(s) 519, 1046
Bbv12I GWGCWC 2 cut(s) 119, 1254
BbvI GCAGC 2 cut(s) 400, 756
BccI CCATC 8 cut(s) 176, 221, 256, 287, 1214, 1440, 1530, 1816
BciT130I CCWGG 3 cut(s) 1302, 1374, 1494
BciVI GTATCC 1 cut(s) 488
BclI TGATCA 1 cut(s) 1327
BcoDI GTCTC 2 cut(s) 417, 1529
BcuI ACTAGT 1 cut(s) 1547
BfaI CTAG 4 cut(s) 600, 732, 1548, 1826
BfmI CTRYAG 3 cut(s) 615, 904, 990
BfrI CTTAAG 2 cut(s) 86, 350
BfuI GTATCC 1 cut(s) 488
BglII AGATCT 2 cut(s) 90, 835
BisI GCNGC 2 cut(s) 389, 770
BlsI GCNGC 2 cut(s) 390, 771
BmcAI AGTACT 1 cut(s) 1588
Bme1390I CCNGG 3 cut(s) 1302, 1374, 1494
Bme18I GGWCC 2 cut(s) 674, 1304
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 674, 1304
BmiI GGNNCC 2 cut(s) 945, 1393
BmrFI CCNGG 3 cut(s) 1302, 1374, 1494
BmsI GCATC 6 cut(s) 93, 142, 1131, 1172, 1584, 1768
BmtI GCTAGC 1 cut(s) 735
BpiI GAAGAC 2 cut(s) 519, 1046
BpmI CTGGAG 1 cut(s) 1378
BpuEI CTTGAG 4 cut(s) 92, 278, 781, 1342
BsaBI GATNNNNATC 2 cut(s) 72, 872
BsaI GGTCTC 1 cut(s) 1529
BsaJI CCNNGG 3 cut(s) 707, 1372, 1373
Bsc4I CCNNNNNNNGG 2 cut(s) 1007, 1621
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 3 cut(s) 1021, 1393, 1395
Bse3DI GCAATG 2 cut(s) 961, 1842
Bse8I GATNNNNATC 2 cut(s) 72, 872
BseBI CCWGG 3 cut(s) 1302, 1374, 1494
BseDI CCNNGG 3 cut(s) 707, 1372, 1373
BseGI GGATG 5 cut(s) 232, 547, 584, 873, 1206
BseJI GATNNNNATC 2 cut(s) 72, 872
BseLI CCNNNNNNNGG 2 cut(s) 1007, 1621
BseMI GCAATG 2 cut(s) 961, 1842
BseMII CTCAG 5 cut(s) 947, 1049, 1524, 1574, 1775
BseNI ACTGG 3 cut(s) 1021, 1393, 1395
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 400, 756
BseYI CCCAGC 1 cut(s) 1210
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 1146
BshFI GGCC 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 119, 1254
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 41, 751
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 2 cut(s) 1007, 1621
BsmAI GTCTC 2 cut(s) 417, 1529
BsmFI GGGAC 1 cut(s) 820
BsmI GAATGC 2 cut(s) 814, 943
BsnI GGCC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 1529
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 119, 1254
BspACI CCGC 2 cut(s) 588, 941
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 5 cut(s) 946, 1048, 1525, 1575, 1776
BspFNI CGCG 1 cut(s) 1146
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 945, 1393
BspOI GCTAGC 1 cut(s) 735
BspPI GGATC 6 cut(s) 68, 273, 481, 938, 951, 1733
BspTI CTTAAG 2 cut(s) 86, 350
BspTNI GGTCTC 1 cut(s) 1529
BsrDI GCAATG 2 cut(s) 961, 1842
BsrFI RCCGGY 1 cut(s) 750
BsrI ACTGG 3 cut(s) 1021, 1393, 1395
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 3 cut(s) 707, 1372, 1373
BssNAI GTATAC 1 cut(s) 1734
BssT1I CCWWGG 1 cut(s) 707
Bst1107I GTATAC 1 cut(s) 1734
Bst2UI CCWGG 3 cut(s) 1302, 1374, 1494
Bst6I CTCTTC 1 cut(s) 22
BstAFI CTTAAG 2 cut(s) 86, 350
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 46, 733, 1289
BstDEI CTNAG 8 cut(s) 94, 851, 933, 1002, 1035, 1533, 1583, 1784
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 5 cut(s) 232, 547, 584, 873, 1206
BstFNI CGCG 1 cut(s) 1146
BstHHI GCGC 1 cut(s) 1146
BstMAI GTCTC 2 cut(s) 417, 1529
BstMWI GCNNNNNNNGC 4 cut(s) 152, 596, 938, 1297
BstNI CCWGG 3 cut(s) 1302, 1374, 1494
BstNSI RCATGY 5 cut(s) 138, 217, 251, 339, 395
BstSCI CCNGG 3 cut(s) 1300, 1372, 1492
BstSFI CTRYAG 3 cut(s) 615, 904, 990
BstUI CGCG 1 cut(s) 1146
BstV1I GCAGC 2 cut(s) 400, 756
BstV2I GAAGAC 2 cut(s) 519, 1046
BstX2I RGATCY 4 cut(s) 90, 265, 835, 943
BstYI RGATCY 4 cut(s) 90, 265, 835, 943
BstZ17I GTATAC 1 cut(s) 1734
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 5 cut(s) 232, 547, 584, 873, 1206
BtsIMutI CAGTG 3 cut(s) 208, 1173, 1781
Cac8I GCNNGC 3 cut(s) 46, 733, 1289
CaiI CAGNNNCTG 1 cut(s) 989
CciI TCATGA 1 cut(s) 279
CfoI GCGC 1 cut(s) 1146
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 2 cut(s) 674, 1304
CseI GACGC 1 cut(s) 1135
Csp6I GTAC 6 cut(s) 647, 748, 1423, 1551, 1587, 1629
CviQI GTAC 6 cut(s) 647, 748, 1423, 1551, 1587, 1629
DdeI CTNAG 8 cut(s) 94, 851, 933, 1002, 1035, 1533, 1583, 1784
DraI TTTAAA 2 cut(s) 159, 235
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 707
Eco31I GGTCTC 1 cut(s) 1529
Eco47I GGWCC 2 cut(s) 674, 1304
Eco57I CTGAAG 3 cut(s) 1197, 1267, 1776
Eco88I CYCGRG 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoRI GAATTC 1 cut(s) 846
EcoRII CCWGG 3 cut(s) 1300, 1372, 1492
EcoT14I CCWWGG 1 cut(s) 707
ErhI CCWWGG 1 cut(s) 707
FalI AAGNNNNNCTT 4 cut(s) 139, 171, 834, 866
FaqI GGGAC 1 cut(s) 820
FbaI TGATCA 1 cut(s) 1327
FblI GTMKAC 3 cut(s) 618, 1518, 1733
Fnu4HI GCNGC 2 cut(s) 389, 770
FokI GGATG 5 cut(s) 239, 554, 571, 860, 1193
Fsp4HI GCNGC 2 cut(s) 389, 770
FspBI CTAG 4 cut(s) 600, 732, 1548, 1826
GlaI GCGC 1 cut(s) 1145
GluI GCNGC 2 cut(s) 389, 770
GsaI CCCAGC 1 cut(s) 1214
GsuI CTGGAG 1 cut(s) 1378
HaeIII GGCC 1 cut(s) 48
HapII CCGG 2 cut(s) 41, 751
HgaI GACGC 1 cut(s) 1135
HhaI GCGC 1 cut(s) 1146
Hin6I GCGC 1 cut(s) 1144
HinP1I GCGC 1 cut(s) 1144
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HinfI GANTC 9 cut(s) 32, 433, 1031, 1115, 1172, 1199, 1484, 1598, 1699
HpaII CCGG 2 cut(s) 41, 751
HphI GGTGA 3 cut(s) 1626, 1694, 1760
Hpy99I CGWCG 3 cut(s) 65, 68, 1219
HpyAV CCTTC 6 cut(s) 443, 632, 953, 1356, 1374, 1419
HpyCH4IV ACGT 3 cut(s) 702, 1107, 1217
HpyCH4V TGCA 9 cut(s) 509, 742, 772, 893, 1079, 1163, 1478, 1781, 1847
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 596, 938, 1297
HpyF3I CTNAG 8 cut(s) 94, 851, 933, 1002, 1035, 1533, 1583, 1784
HpySE526I ACGT 3 cut(s) 702, 1107, 1217
HspAI GCGC 1 cut(s) 1144
Ksp22I TGATCA 1 cut(s) 1327
LmnI GCTCC 3 cut(s) 122, 332, 1397
Lsp1109I GCAGC 2 cut(s) 400, 756
LweI GCATC 6 cut(s) 93, 142, 1131, 1172, 1584, 1768
MaeI CTAG 4 cut(s) 600, 732, 1548, 1826
MaeII ACGT 3 cut(s) 702, 1107, 1217
MaeIII GTNAC 5 cut(s) 127, 434, 1384, 1750, 1802
MfeI CAATTG 1 cut(s) 1238
MflI RGATCY 4 cut(s) 90, 265, 835, 943
MhlI GDGCHC 2 cut(s) 119, 1254
MluCI AATT 6 cut(s) 632, 846, 922, 1233, 1238, 1341
MlyI GAGTC 2 cut(s) 442, 1478
MmeI TCCRAC 6 cut(s) 101, 232, 901, 1081, 1478, 1490
MnlI CCTC 5 cut(s) 33, 59, 484, 838, 1302
MroXI GAANNNNTTC 2 cut(s) 31, 453
MseI TTAA 6 cut(s) 87, 158, 234, 351, 789, 1271
MslI CAYNNNNRTG 1 cut(s) 1773
MspA1I CMGCKG 1 cut(s) 460
MspCI CTTAAG 2 cut(s) 86, 350
MspI CCGG 2 cut(s) 41, 751
MspR9I CCNGG 3 cut(s) 1302, 1374, 1494
MunI CAATTG 1 cut(s) 1238
Mva1269I GAATGC 2 cut(s) 814, 943
MvaI CCWGG 3 cut(s) 1302, 1374, 1494
MvnI CGCG 1 cut(s) 1146
MwoI GCNNNNNNNGC 4 cut(s) 152, 596, 938, 1297
NheI GCTAGC 1 cut(s) 731
NlaIV GGNNCC 2 cut(s) 945, 1393
NmuCI GTSAC 3 cut(s) 127, 434, 1802
NspI RCATGY 5 cut(s) 138, 217, 251, 339, 395
PaeR7I CTCGAG 1 cut(s) 242
PagI TCATGA 1 cut(s) 279
PasI CCCWGGG 1 cut(s) 1373
PciI ACATGT 1 cut(s) 134
PctI GAATGC 2 cut(s) 814, 943
PdmI GAANNNNTTC 2 cut(s) 31, 453
PfeI GAWTC 7 cut(s) 32, 1031, 1115, 1172, 1199, 1598, 1699
PkrI GCNGC 2 cut(s) 390, 771
PleI GAGTC 2 cut(s) 441, 1478
PpsI GAGTC 2 cut(s) 441, 1478
PscI ACATGT 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 1107
Psp6I CCWGG 3 cut(s) 1300, 1372, 1492
PspFI CCCAGC 1 cut(s) 1210
PspGI CCWGG 3 cut(s) 1300, 1372, 1492
PspN4I GGNNCC 2 cut(s) 945, 1393
PspPI GGNCC 2 cut(s) 674, 1304
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 4 cut(s) 90, 265, 835, 943
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 6 cut(s) 648, 749, 1424, 1552, 1588, 1630
RsaNI GTAC 6 cut(s) 647, 748, 1423, 1551, 1587, 1629
RseI CAYNNNNRTG 1 cut(s) 1773
SaqAI TTAA 6 cut(s) 87, 158, 234, 351, 789, 1271
SatI GCNGC 2 cut(s) 389, 770
Sau96I GGNCC 2 cut(s) 674, 1304
ScaI AGTACT 1 cut(s) 1588
SchI GAGTC 2 cut(s) 442, 1478
ScrFI CCNGG 3 cut(s) 1302, 1374, 1494
SduI GDGCHC 2 cut(s) 119, 1254
SfaNI GCATC 6 cut(s) 93, 142, 1131, 1172, 1584, 1768
SfcI CTRYAG 3 cut(s) 615, 904, 990
Sfr274I CTCGAG 1 cut(s) 242
SinI GGWCC 2 cut(s) 674, 1304
SlaI CTCGAG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 1773
SmlI CTYRAG 7 cut(s) 86, 107, 242, 257, 350, 760, 1357
SmoI CTYRAG 7 cut(s) 86, 107, 242, 257, 350, 760, 1357
SpeI ACTAGT 1 cut(s) 1547
Sse9I AATT 6 cut(s) 632, 846, 922, 1233, 1238, 1341
SsiI CCGC 2 cut(s) 588, 941
SspI AATATT 2 cut(s) 1024, 1817
SspMI CTAG 4 cut(s) 600, 732, 1548, 1826
StyD4I CCNGG 3 cut(s) 1300, 1372, 1492
StyI CCWWGG 1 cut(s) 707
TaiI ACGT 3 cut(s) 705, 1110, 1220
TaqI TCGA 5 cut(s) 25, 66, 243, 527, 866
TasI AATT 6 cut(s) 632, 846, 922, 1233, 1238, 1341
TatI WGTACW 5 cut(s) 646, 1422, 1550, 1586, 1628
TfiI GAWTC 7 cut(s) 32, 1031, 1115, 1172, 1199, 1598, 1699
Tru1I TTAA 6 cut(s) 87, 158, 234, 351, 789, 1271
Tru9I TTAA 6 cut(s) 87, 158, 234, 351, 789, 1271
TscAI CASTG 3 cut(s) 208, 1173, 1788
TseFI GTSAC 3 cut(s) 127, 434, 1802
TseI GCWGC 2 cut(s) 388, 769
Tsp45I GTSAC 3 cut(s) 127, 434, 1802
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 3 cut(s) 208, 1173, 1788
Vha464I CTTAAG 2 cut(s) 86, 350
VpaK11BI GGWCC 2 cut(s) 674, 1304
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 3 cut(s) 632, 846, 1233
XceI RCATGY 5 cut(s) 138, 217, 251, 339, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 1510
XhoI CTCGAG 1 cut(s) 242
XmiI GTMKAC 3 cut(s) 618, 1518, 1733
XmnI GAANNNNTTC 2 cut(s) 31, 453
XspI CTAG 4 cut(s) 600, 732, 1548, 1826
ZrmI AGTACT 1 cut(s) 1588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.