Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Forward (+)

6278115 .. 6279138

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGCCTGACTACATGTGGTTTGGCAAGAGATGCTTTGCACTTGCTTCGCCAAAAGAAAGATGGATATGACATTGTTATCAGTGATGTGAACATGCCTGACATGGATGGTTTTAGACTTCTCGAGCATGTAGGACTTGAGATGGATCTTCCAGTTATTATGATGTCTGTTGATGGAGAAACGAGTAGGGTTATGAGAGGAGTTCAACATGGAGCATGTGATTATCTTCTTAAGCCGATAAGAATGAAAGAACTGAGTAATATATGGCAGCATGTCTTTAGAAAGAAGATACATGAGATAAGAGACATTGAGAGTCATGAAAGCTTGGAGGGTATTCAGCTTATAAGAAGTGGATCAGATCAGTATGATGAGGGCTACTTTCTCAGCGCAGATGACCTCACTTCATCGAGAAAAAGAAAGGATGTCGATAACAAATACGATGACAAAGACTTTGCTGATTTTTCATCTACAAAAAAGGCTAGAGTTGTTTGGTCCGTAGATCTTCATCAGAAATTTGTAAAAGCAGTACACCATATTGGATTTGACAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

185

Amino Acids

21.27

Weight (kDa)

6.3

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	6 - 87	3.2e-17	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AclWI	GGATC	2 cut(s)	153, 361
AcsI	RAATTY	1 cut(s)	512
AfaI	GTAC	1 cut(s)	528
AflII	CTTAAG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	206
AluBI	AGCT	2 cut(s)	324, 340
AluI	AGCT	2 cut(s)	324, 340
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	153, 361
Ama87I	CYCGRG	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	512
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspLEI	GCGC	2 cut(s)	6, 389
AspS9I	GGNCC	1 cut(s)	492
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	4 cut(s)	56, 101, 136, 167
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	230
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	492
BmsI	GCATC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	504
Bse1I	ACTGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	504
BseGI	GGATG	2 cut(s)	112, 427
BseJI	GATNNNNATC	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	245, 397
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	122
Bsp143I	GATC	4 cut(s)	145, 353, 358, 499
BspCNI	CTCAG	2 cut(s)	246, 396
BspHI	TCATGA	1 cut(s)	316
BspPI	GGATC	2 cut(s)	153, 361
BspTI	CTTAAG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	4 cut(s)	145, 353, 358, 499
Bst4CI	ACNGT	1 cut(s)	548
BstAFI	CTTAAG	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	254, 383
BstF5I	GGATG	2 cut(s)	112, 427
BstHHI	GCGC	2 cut(s)	6, 389
BstKTI	GATC	4 cut(s)	148, 356, 361, 502
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	145, 353, 358, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	5 cut(s)	18, 97, 131, 219, 275
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	2 cut(s)	145, 499
BstYI	RGATCY	2 cut(s)	145, 499
BtsCI	GGATG	2 cut(s)	112, 427
BtsIMutI	CAGTG	1 cut(s)	88
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	2 cut(s)	6, 389
Cfr13I	GGNCC	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	9 cut(s)	15, 94, 103, 128, 209, 216, 272, 293, 317
CviJI	RGCY	5 cut(s)	235, 324, 340, 375, 479
CviKI_1	RGCY	5 cut(s)	235, 324, 340, 375, 479
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	2 cut(s)	254, 383
DpnI	GATC	4 cut(s)	147, 355, 360, 501
DpnII	GATC	4 cut(s)	145, 353, 358, 499
Eco47I	GGWCC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	122
FaeI	CATG	9 cut(s)	18, 97, 106, 131, 212, 219, 275, 296, 320
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FatI	CATG	9 cut(s)	14, 93, 102, 127, 208, 215, 271, 292, 316
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	119, 434
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	2 cut(s)	5, 388
GluI	GCNGC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	6, 389
Hin1II	CATG	9 cut(s)	18, 97, 106, 131, 212, 219, 275, 296, 320
Hin6I	GCGC	2 cut(s)	4, 387
HinP1I	GCGC	2 cut(s)	4, 387
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	91, 529
Hpy188I	TCNGA	2 cut(s)	358, 510
Hpy188III	TCNNGA	3 cut(s)	122, 317, 408
Hpy8I	GTNNAC	2 cut(s)	91, 529
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	254, 383
Hsp92II	CATG	9 cut(s)	18, 97, 106, 131, 212, 219, 275, 296, 320
HspAI	GCGC	2 cut(s)	4, 387
Kzo9I	GATC	4 cut(s)	145, 353, 358, 499
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	3 cut(s)	20, 111, 165
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	480
MalI	GATC	4 cut(s)	147, 355, 360, 501
MboI	GATC	4 cut(s)	145, 353, 358, 499
MboII	GAAGA	4 cut(s)	140, 218, 298, 494
MflI	RGATCY	2 cut(s)	145, 499
MluCI	AATT	1 cut(s)	512
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	4 cut(s)	191, 322, 364, 407
MseI	TTAA	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	4 cut(s)	145, 353, 358, 499
NlaIII	CATG	9 cut(s)	18, 97, 106, 131, 212, 219, 275, 296, 320
NspI	RCATGY	5 cut(s)	18, 97, 131, 219, 275
PaeR7I	CTCGAG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	316
PciI	ACATGT	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PscI	ACATGT	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	492
PsuI	RGATCY	2 cut(s)	145, 499
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	4 cut(s)	145, 353, 358, 499
Sau96I	GGNCC	1 cut(s)	492
SchI	GAGTC	1 cut(s)	322
SetI	ASST	3 cut(s)	326, 342, 399
SfaNI	GCATC	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	492
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	3 cut(s)	122, 137, 230
SmoI	CTYRAG	3 cut(s)	122, 137, 230
Sse9I	AATT	1 cut(s)	512
SspMI	CTAG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	3 cut(s)	123, 407, 426
TasI	AATT	1 cut(s)	512
TatI	WGTACW	1 cut(s)	526
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	5 cut(s)	260, 333, 393, 453, 494
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	512
XceI	RCATGY	5 cut(s)	18, 97, 131, 219, 275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	122
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.