Rh4CG333000
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
59397760 .. 59402294
4535 bp
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UTR
Exon/CDS
Intron
Rh4CG333000.1

Sequence Viewer

Length: 1704 bp
ATGGTCACTATGACTACATGTGGTTTGGCAAGAGATGCTTTATACTTGCTTCGAGAAAAGAAAGATGGATATGACATTGTAATCAGTGATGTGAACATGCCTGACATGGATGGTTTTAAACTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGAGAAACAAGTAGAGTTATGAAAGGAGTTCAACATGGAGCATGTGATTATCTTCTTAAGCCTATAAGAATGAAAGAACTGAAAAACATATGGCAGCATGTCTTCAGAAAAAAGATACATGAGATAAGAGACATAGAGGGTCATGAAAGCATCGACGGTATTCAGCTGACGAGAAATGGATCAGATCTCTATGATGATGGATACTTCCTTGGTGCCGACGACCTCACTTCATCGAGAAAAAGAAAGGACATCGAAAACAAATATGATGACAAAGACTTTGGTGATTCTTCATCTACGAAAAAAGCTAGGGTAGTCTGGTCTGTTGATCTTCATCAGAAATTTGTAAAAGCGGTGCATCAGATTGGATTTGACAAAGTTGGTCCAAAGAAAATACTTGACCTGATGAACGTGCCCTGGTTGACCAGAGAAAATGTTGCAAGCCACTTGCAGAAGTATCGGCTCTACTTGAGTAGGCTGCAAAAGGAAAATGACCTTAAATCTTCTTTTGGCGGGATGAATCATTCTGATTATGCCGCAAAAGATCCTCAAGGAATCTTTGGTCTTCAGAACTCGATCAGCATTCCACAAAATGATGTTACAAATGGCAGCTACAGATTTTCTGGCAATAACTTGGTTGCTCCGACTGTGGTGGATCCAAAGAGAGTTGAAGATGATGTAAAGGGAATTATTCCGGAGCCTGTAGCAGAACCCAAGAGAGGTTCGACTCGCAGTATTCCTGATTCTCACAAGACGAACTTAAGTCATTCTTATGCAGAAACCAAGAAAGGCTTGATTGGTAATGTTGCTGATTCTCTGAAGATCAGGAGTTCACAGATGGGAGTCAATCATTCATTTGCATCAGTGGAATCTGAAATAAACTTCACTATACCAACAAAGTATTCTTGGATTGAAGCTCAAATGAAACAAGAGCACAAGCCGGTTGTTCAGTTAGATAATGGCTTCAACAAGCCACAACCGCCTGGTGTACAGCACCACCTCCAAGCTGATCTACTACAGCCAATTCCTTCCATTAGTTCAAGACAGCCAATTCCTTCCATTAGTTCAAGACCATCCATCTTAGATGAAGAAACAAATCGTCCCATTAAGAATAAGCCTTCACAAGCTGCGTACAGAAACAGTCACATTAGCCATGTAAGTCCAACAATAACTGCAGCAGACTCCTTTTCAGAACAGACCAAGAGCTGTGTGGTGGACCAAGGTTTTGACCCCAGTTCCAGCTGTTTATCAAACATGAAAAACCAGGGCTTCAATCTGAGTTGCCTTACTAATTTCGAACCTGTCCAAAAGAACCTATTCTTTGGAAGTGGGTCATCTTTTGCTTCTTTGGAGGACGAGTTGCAAATTTGTTTGTATCCAGCTGATTATTTTGGTATGAACCTTGGGGTTTCGGAGTATAATGATCCTGAAGTTCCTGCTCACTTGTATGAGGCAATGAGATTTGGCTGTGAGTATCCATGTGAGTCATCGGAATATCCTCTGGCAGATCAGAGTCTTTTCATAGCATAA

Protein Analysis

567

Amino Acids

63.52

Weight (kDa)

5.93

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 8 - 88 4.6e-16 Response regulator receiver domain
Myb_DNA-binding PF00249 162 - 212 8.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 868
AciI CCGC 4 cut(s) 527, 687, 711, 1154
AclWI GGATC 6 cut(s) 156, 364, 713, 824, 837, 1592
AcsI RAATTY 2 cut(s) 515, 1539
AcuI CTGAAG 4 cut(s) 265, 725, 1013, 1623
AfaI GTAC 2 cut(s) 1164, 1307
AfiI CCNNNNNNNGG 1 cut(s) 893
AflII CTTAAG 2 cut(s) 233, 934
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 7 cut(s) 209, 845, 1088, 1141, 1215, 1242, 1447
AjnI CCWGG 3 cut(s) 590, 1156, 1437
AjuI GAANNNNNNNTTGG 2 cut(s) 1060, 1092
AluBI AGCT 9 cut(s) 343, 482, 786, 1091, 1181, 1301, 1380, 1416, 1556
AluI AGCT 9 cut(s) 343, 482, 786, 1091, 1181, 1301, 1380, 1416, 1556
Alw21I GWGCWC 1 cut(s) 1110
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 6 cut(s) 156, 364, 713, 824, 837, 1592
Ama87I CYCGRG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 868
ApeKI GCWGC 5 cut(s) 271, 652, 783, 1301, 1349
ApoI RAATTY 2 cut(s) 515, 1539
ArsI GACNNNNNNTTYG 4 cut(s) 437, 469, 1382, 1414
Asp700I GAANNNNTTC 1 cut(s) 1490
AspS9I GGNCC 2 cut(s) 557, 1390
AsuHPI GGTGA 1 cut(s) 470
AsuII TTCGAA 1 cut(s) 1470
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 557, 1390
BaeGI GKGCMC 1 cut(s) 591
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 271, 731
Bbv12I GWGCWC 1 cut(s) 1110
BbvI GCAGC 5 cut(s) 283, 639, 795, 1288, 1361
BccI CCATC 8 cut(s) 59, 104, 139, 170, 368, 1006, 1255, 1259
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 3 cut(s) 592, 1158, 1439
BciVI GTATCC 3 cut(s) 371, 1560, 1659
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 4 cut(s) 787, 876, 1190, 1347
BfrI CTTAAG 2 cut(s) 233, 934
BfuI GTATCC 3 cut(s) 371, 1560, 1659
BglII AGATCT 1 cut(s) 361
BisI GCNGC 6 cut(s) 272, 653, 711, 784, 1302, 1350
BlsI GCNGC 6 cut(s) 273, 654, 712, 785, 1303, 1351
Bme1390I CCNGG 3 cut(s) 592, 1158, 1439
Bme18I GGWCC 2 cut(s) 557, 1390
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 557, 1390
BmiI GGNNCC 3 cut(s) 391, 831, 873
BmrFI CCNGG 3 cut(s) 592, 1158, 1439
BmrI ACTGGG 1 cut(s) 1401
BmsI GCATC 4 cut(s) 25, 336, 541, 1043
BmuI ACTGGG 1 cut(s) 1401
BpiI GAAGAC 2 cut(s) 271, 731
Bpu14I TTCGAA 1 cut(s) 1470
BpuEI CTTGAG 3 cut(s) 161, 664, 708
BsaBI GATNNNNATC 1 cut(s) 507
BsaJI CCNNGG 5 cut(s) 385, 590, 1393, 1438, 1576
BsaWI WCCGGW 1 cut(s) 868
BsaXI ACNNNNNCTCC 2 cut(s) 1517, 1547
Bsc4I CCNNNNNNNGG 1 cut(s) 893
Bse118I RCCGGY 1 cut(s) 1114
Bse1I ACTGG 1 cut(s) 1407
Bse3DI GCAATG 1 cut(s) 1635
Bse8I GATNNNNATC 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 868
BseBI CCWGG 3 cut(s) 592, 1158, 1439
BseDI CCNNGG 5 cut(s) 385, 590, 1393, 1438, 1576
BseGI GGATG 3 cut(s) 115, 696, 1247
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 1 cut(s) 893
BseMI GCAATG 1 cut(s) 1635
BseMII CTCAG 1 cut(s) 1442
BseNI ACTGG 1 cut(s) 1407
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 5 cut(s) 283, 639, 795, 1288, 1361
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 1110
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 2 cut(s) 869, 1115
BslFI GGGAC 1 cut(s) 1260
BslI CCNNNNNNNGG 1 cut(s) 893
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 1260
BsmI GAATGC 1 cut(s) 756
BsoBI CYCGRG 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 1470
Bsp1286I GDGCHC 2 cut(s) 591, 1110
Bsp13I TCCGGA 1 cut(s) 868
Bsp1407I TGTACA 1 cut(s) 1162
BspACI CCGC 4 cut(s) 527, 687, 711, 1154
BspCNI CTCAG 1 cut(s) 1443
BspEI TCCGGA 1 cut(s) 868
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 391, 831, 873
BspMAI CTGCAG 1 cut(s) 1351
BspPI GGATC 6 cut(s) 156, 364, 713, 824, 837, 1592
BspT104I TTCGAA 1 cut(s) 1470
BspT107I GGYRCC 1 cut(s) 389
BspTI CTTAAG 2 cut(s) 233, 934
BsrDI GCAATG 1 cut(s) 1635
BsrFI RCCGGY 1 cut(s) 1114
BsrGI TGTACA 1 cut(s) 1162
BsrI ACTGG 1 cut(s) 1407
BssAI RCCGGY 1 cut(s) 1114
BssECI CCNNGG 5 cut(s) 385, 590, 1393, 1438, 1576
BssT1I CCWWGG 3 cut(s) 385, 1393, 1576
Bst2UI CCWGG 3 cut(s) 592, 1158, 1439
Bst4CI ACNGT 3 cut(s) 335, 823, 1316
BstAFI CTTAAG 2 cut(s) 233, 934
BstAPI GCANNNNNTGC 1 cut(s) 35
BstAUI TGTACA 1 cut(s) 1162
BstBI TTCGAA 1 cut(s) 1470
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 2 cut(s) 1255, 1451
BstF5I GGATG 3 cut(s) 115, 696, 1247
BstMAI GTCTC 1 cut(s) 300
BstMWI GCNNNNNNNGC 2 cut(s) 35, 1153
BstNI CCWGG 3 cut(s) 592, 1158, 1439
BstNSI RCATGY 5 cut(s) 21, 100, 134, 222, 278
BstSCI CCNGG 3 cut(s) 590, 1156, 1437
BstSFI CTRYAG 4 cut(s) 787, 876, 1190, 1347
BstSLI GKGCMC 1 cut(s) 591
BstV1I GCAGC 5 cut(s) 283, 639, 795, 1288, 1361
BstV2I GAAGAC 2 cut(s) 271, 731
BstX2I RGATCY 4 cut(s) 148, 361, 718, 829
BstYI RGATCY 4 cut(s) 148, 361, 718, 829
BsuI GTATCC 3 cut(s) 371, 1560, 1659
BtsCI GGATG 3 cut(s) 115, 696, 1247
BtsIMutI CAGTG 2 cut(s) 91, 1044
Cac8I GCNNGC 1 cut(s) 616
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 1114
Cfr13I GGNCC 2 cut(s) 557, 1390
Csp6I GTAC 2 cut(s) 1163, 1306
CviQI GTAC 2 cut(s) 1163, 1306
DdeI CTNAG 2 cut(s) 1255, 1451
DraI TTTAAA 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 385, 1393, 1576
Eco47I GGWCC 2 cut(s) 557, 1390
Eco57I CTGAAG 4 cut(s) 265, 725, 1013, 1623
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 590, 1156, 1437
EcoT14I CCWWGG 3 cut(s) 385, 1393, 1576
ErhI CCWWGG 3 cut(s) 385, 1393, 1576
FalI AAGNNNNNCTT 8 cut(s) 22, 54, 917, 949, 928, 960, 950, 982
FaqI GGGAC 1 cut(s) 1260
FauI CCCGC 1 cut(s) 680
FauNDI CATATG 1 cut(s) 266
Fnu4HI GCNGC 6 cut(s) 272, 653, 711, 784, 1302, 1350
FokI GGATG 3 cut(s) 122, 703, 1234
Fsp4HI GCNGC 6 cut(s) 272, 653, 711, 784, 1302, 1350
FspBI CTAG 1 cut(s) 483
GluI GCNGC 6 cut(s) 272, 653, 711, 784, 1302, 1350
HapII CCGG 2 cut(s) 869, 1115
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HpaII CCGG 2 cut(s) 869, 1115
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 5 cut(s) 94, 597, 1007, 1163, 1390
Hpy8I GTNNAC 5 cut(s) 94, 597, 1007, 1163, 1390
Hpy99I CGWCG 2 cut(s) 335, 398
HpyAV CCTTC 3 cut(s) 1212, 1239, 1302
HpyCH4III ACNGT 3 cut(s) 335, 823, 1316
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 8 cut(s) 532, 614, 625, 655, 950, 1034, 1349, 1537
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 1153
HpyF3I CTNAG 2 cut(s) 1255, 1451
HpySE526I ACGT 1 cut(s) 585
Kpn2I TCCGGA 1 cut(s) 868
LmnI GCTCC 3 cut(s) 215, 820, 871
Lsp1109I GCAGC 5 cut(s) 283, 639, 795, 1288, 1361
LweI GCATC 4 cut(s) 25, 336, 541, 1043
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 3 cut(s) 4, 772, 1316
MflI RGATCY 4 cut(s) 148, 361, 718, 829
MhlI GDGCHC 2 cut(s) 591, 1110
MluCI AATT 6 cut(s) 515, 861, 1197, 1224, 1465, 1539
MlyI GAGTC 5 cut(s) 895, 1026, 1349, 1667, 1696
MmeI TCCRAC 3 cut(s) 115, 842, 1361
MnlI CCTC 8 cut(s) 307, 410, 732, 887, 1184, 1519, 1618, 1683
MroI TCCGGA 1 cut(s) 868
MroXI GAANNNNTTC 1 cut(s) 1490
MseI TTAA 5 cut(s) 117, 234, 672, 935, 1281
MslI CAYNNNNRTG 2 cut(s) 945, 1620
MspA1I CMGCKG 3 cut(s) 343, 1416, 1556
MspCI CTTAAG 2 cut(s) 233, 934
MspI CCGG 2 cut(s) 869, 1115
MspR9I CCNGG 3 cut(s) 592, 1158, 1439
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 3 cut(s) 592, 1158, 1439
MwoI GCNNNNNNNGC 2 cut(s) 35, 1153
NdeI CATATG 1 cut(s) 266
NlaIV GGNNCC 3 cut(s) 391, 831, 873
NmuCI GTSAC 2 cut(s) 4, 1316
NspI RCATGY 5 cut(s) 21, 100, 134, 222, 278
NspV TTCGAA 1 cut(s) 1470
PaeR7I CTCGAG 1 cut(s) 125
PagI TCATGA 1 cut(s) 319
PciI ACATGT 1 cut(s) 17
PctI GAATGC 1 cut(s) 756
PdmI GAANNNNTTC 1 cut(s) 1490
PfeI GAWTC 6 cut(s) 461, 694, 729, 917, 986, 1043
PkrI GCNGC 6 cut(s) 273, 654, 712, 785, 1303, 1351
PleI GAGTC 5 cut(s) 895, 1025, 1349, 1666, 1695
PpsI GAGTC 5 cut(s) 895, 1025, 1349, 1666, 1695
PscI ACATGT 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 590, 1156, 1437
PspGI CCWGG 3 cut(s) 590, 1156, 1437
PspN4I GGNNCC 3 cut(s) 391, 831, 873
PspPI GGNCC 2 cut(s) 557, 1390
PstI CTGCAG 1 cut(s) 1351
PsuI RGATCY 4 cut(s) 148, 361, 718, 829
PvuII CAGCTG 3 cut(s) 343, 1416, 1556
RsaI GTAC 2 cut(s) 1164, 1307
RsaNI GTAC 2 cut(s) 1163, 1306
RseI CAYNNNNRTG 2 cut(s) 945, 1620
SaqAI TTAA 5 cut(s) 117, 234, 672, 935, 1281
SatI GCNGC 6 cut(s) 272, 653, 711, 784, 1302, 1350
Sau96I GGNCC 2 cut(s) 557, 1390
SchI GAGTC 5 cut(s) 895, 1026, 1349, 1667, 1696
ScrFI CCNGG 3 cut(s) 592, 1158, 1439
SduI GDGCHC 2 cut(s) 591, 1110
SfaNI GCATC 4 cut(s) 25, 336, 541, 1043
SfcI CTRYAG 4 cut(s) 787, 876, 1190, 1347
Sfr274I CTCGAG 1 cut(s) 125
SfuI TTCGAA 1 cut(s) 1470
SinI GGWCC 2 cut(s) 557, 1390
SlaI CTCGAG 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 945, 1620
SmlI CTYRAG 6 cut(s) 125, 140, 233, 643, 723, 934
SmoI CTYRAG 6 cut(s) 125, 140, 233, 643, 723, 934
Sse9I AATT 6 cut(s) 515, 861, 1197, 1224, 1465, 1539
SsiI CCGC 4 cut(s) 527, 687, 711, 1154
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 3 cut(s) 590, 1156, 1437
StyI CCWWGG 3 cut(s) 385, 1393, 1576
TaaI ACNGT 3 cut(s) 335, 823, 1316
TaiI ACGT 1 cut(s) 588
TaqI TCGA 8 cut(s) 52, 126, 330, 410, 429, 749, 899, 1470
TasI AATT 6 cut(s) 515, 861, 1197, 1224, 1465, 1539
TatI WGTACW 1 cut(s) 1162
TauI GCSGC 1 cut(s) 713
TfiI GAWTC 6 cut(s) 461, 694, 729, 917, 986, 1043
Tru1I TTAA 5 cut(s) 117, 234, 672, 935, 1281
Tru9I TTAA 5 cut(s) 117, 234, 672, 935, 1281
TscAI CASTG 2 cut(s) 91, 1044
TseFI GTSAC 2 cut(s) 4, 1316
TseI GCWGC 5 cut(s) 271, 652, 783, 1301, 1349
Tsp45I GTSAC 2 cut(s) 4, 1316
TspRI CASTG 2 cut(s) 91, 1044
Vha464I CTTAAG 2 cut(s) 233, 934
VpaK11BI GGWCC 2 cut(s) 557, 1390
XapI RAATTY 2 cut(s) 515, 1539
XceI RCATGY 5 cut(s) 21, 100, 134, 222, 278
XcmI CCANNNNNNNNNTGG 1 cut(s) 1381
XhoI CTCGAG 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 1490
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.