Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Forward (+)

6192267 .. 6194038

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATAGTAGCTTCTCTTCTCCCCGGAACGATTCGTTTCCGGCTGGGCTCCGGGTCCTCGTCGTCGACGACGATCCCACTTGGCTTAAGATCTTAGAAAAGATGCTCAAGAAGTGCTCATACGAAGTGACTACATGTGGTTTGGCAAGAGAAGCTTTATGCTTGCTTCGTGAAAAGAAAAATGGATATGACATTGTAATCAGTGATGTCAACATGCCCGACATGGATGGTTTTAAACTTCTCGAGCATGTAGGACTTGAGATGGATCTTCCAGTTATTATGATGTCTGTTGATGGAGAAACGAGTAGGGTTATGAAAGGAGTTCAACATGGAGCGTGTGATTATCTTCTGAAGCCGATAAGAATGAAAGAACTACGTAATATATGGCAGCATGTCTTTAGAAAGAAGATACATGAGATAAAAGACATTGAGAGTCATGAAAGCGTCGAAGGTATTCAGCTTATAAGAAGTGGATCGATCAGTATGATGAGGGATACTTTCTTGGCGCAGATGACCTCACTTCATCGAGAAAAAGAAAGGATGTCGATAACAAATACGATGACAAAGACTTTGCTGATTGTTCGTCGGCAAAAAAAGCTAGAGTTGTTTGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

206

Amino Acids

23.62

Weight (kDa)

8.31

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	66
AclWI	GGATC	3 cut(s)	68, 273, 481
AcuI	CTGAAG	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	326
AluBI	AGCT	4 cut(s)	12, 155, 460, 598
AluI	AGCT	4 cut(s)	12, 155, 460, 598
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	3 cut(s)	68, 273, 481
Ama87I	CYCGRG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	2 cut(s)	25, 53
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	3 cut(s)	33, 104, 136
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	3 cut(s)	221, 256, 287
BciVI	GTATCC	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	25, 53
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	614
BfrI	CTTAAG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	487
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	25, 53
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	50, 56
BmrFI	CCNGG	2 cut(s)	25, 53
BmsI	GCATC	1 cut(s)	93
BpuEI	CTTGAG	2 cut(s)	92, 278
BpuMI	CCSGG	2 cut(s)	25, 53
Bsa29I	ATCGAT	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	2 cut(s)	232, 546
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	400
BseYI	CCCAGC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	25, 41, 52
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	51, 119
Bsp143I	GATC	5 cut(s)	73, 90, 265, 473, 477
BspDI	ATCGAT	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	50, 56
BspPI	GGATC	3 cut(s)	68, 273, 481
BspTI	CTTAAG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	5 cut(s)	73, 90, 265, 473, 477
Bst6I	CTCTTC	1 cut(s)	22
BstAFI	CTTAAG	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	232, 546
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	5 cut(s)	76, 93, 268, 476, 480
BstMBI	GATC	5 cut(s)	73, 90, 265, 473, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 595
BstNSI	RCATGY	4 cut(s)	138, 217, 251, 395
BstSCI	CCNGG	2 cut(s)	23, 51
BstSFI	CTRYAG	1 cut(s)	614
BstSNI	TACGTA	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	2 cut(s)	90, 265
BstYI	RGATCY	2 cut(s)	90, 265
Bsu15I	ATCGAT	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	487
BsuTUI	ATCGAT	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	232, 546
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	476
CseI	GACGC	1 cut(s)	433
CviAII	CATG	8 cut(s)	135, 214, 223, 248, 329, 392, 413, 437
CviJI	RGCY	8 cut(s)	12, 44, 49, 85, 155, 355, 460, 598
CviKI_1	RGCY	8 cut(s)	12, 44, 49, 85, 155, 355, 460, 598
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	5 cut(s)	75, 92, 267, 475, 479
DpnII	GATC	5 cut(s)	73, 90, 265, 473, 477
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	8 cut(s)	138, 217, 226, 251, 332, 395, 416, 440
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	8 cut(s)	134, 213, 222, 247, 328, 391, 412, 436
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	2 cut(s)	239, 553
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	389
GsaI	CCCAGC	1 cut(s)	48
HapII	CCGG	3 cut(s)	25, 41, 52
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	8 cut(s)	138, 217, 226, 251, 332, 395, 416, 440
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	2 cut(s)	67, 211
HindII	GTYRAC	2 cut(s)	67, 211
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	2 cut(s)	32, 433
HpaII	CCGG	3 cut(s)	25, 41, 52
Hpy166II	GTNNAC	2 cut(s)	67, 211
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	5 cut(s)	109, 170, 242, 437, 527
Hpy8I	GTNNAC	2 cut(s)	67, 211
Hpy99I	CGWCG	6 cut(s)	65, 68, 71, 74, 449, 588
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 595
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	8 cut(s)	138, 217, 226, 251, 332, 395, 416, 440
HspAI	GCGC	1 cut(s)	506
Kzo9I	GATC	5 cut(s)	73, 90, 265, 473, 477
LmnI	GCTCC	2 cut(s)	54, 332
LpnPI	CCDG	5 cut(s)	30, 38, 54, 65, 285
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	5 cut(s)	75, 92, 267, 475, 479
MboI	GATC	5 cut(s)	73, 90, 265, 473, 477
MboII	GAAGA	4 cut(s)	9, 260, 338, 418
MflI	RGATCY	2 cut(s)	90, 265
MhlI	GDGCHC	2 cut(s)	51, 119
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	3 cut(s)	68, 483, 526
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	87, 234
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	3 cut(s)	25, 41, 52
MspR9I	CCNGG	2 cut(s)	25, 53
MwoI	GCNNNNNNNGC	2 cut(s)	152, 595
NciI	CCSGG	2 cut(s)	25, 53
NdeII	GATC	5 cut(s)	73, 90, 265, 473, 477
NlaIII	CATG	8 cut(s)	138, 217, 226, 251, 332, 395, 416, 440
NlaIV	GGNNCC	2 cut(s)	50, 56
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	4 cut(s)	138, 217, 251, 395
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 69
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	55
PscI	ACATGT	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	50, 56
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	90, 265
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	87, 234
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	5 cut(s)	73, 90, 265, 473, 477
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	25, 53
SduI	GDGCHC	2 cut(s)	51, 119
SetI	ASST	7 cut(s)	14, 157, 379, 454, 462, 518, 600
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	614
Sfr274I	CTCGAG	1 cut(s)	242
SgrDI	CGTCGACG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	4 cut(s)	86, 107, 242, 257
SmoI	CTYRAG	4 cut(s)	86, 107, 242, 257
SnaBI	TACGTA	1 cut(s)	377
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	23, 51
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	6 cut(s)	66, 243, 447, 476, 526, 545
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	87, 234
Tru9I	TTAA	2 cut(s)	87, 234
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	329, 380, 453, 512
TspRI	CASTG	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	4 cut(s)	138, 217, 251, 395
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.