Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003243

Physical Location & Seq

Genomic Coordinates Forward (+)

6299780 .. 6301397

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGAGTAGCTTCTCTTCTCCCCGAAACGATACTTTTCCGGCTGGCCTCCGGGTCGTCGTCGTCGACGACGATCGATCATCCTCATCCTCCTCCACTTGGCTTAAGATCTTAGAAAAGATGCTCAAGAGGTGCTCCTACGAAGTGACTACATGTGGTTTGGCAAGAGATGCCTTGCACTTGCTTCGCCAAAAGAAGGATGGATATGACATTGTTATCAGTGATGTGAACATGCCTGACATGGATGGTTTTAGACTTCTCGAGCATGTAGGACTTGAGATGGATCTTCCAGTTATTATGATGTCTGTTGATGGAGAAACGAGTAGGGTTATGAGAGGAGTTCAACATGGAGCATGTGATTATCTTCTTAAGCCGATAAGAATGAAAGAACTGAGTAATATATGGCAGCATGTCTTTAGAAAGAAGATACATGAGATAAGAGACATTGAGAGTCATGAAAGCTTGGAGGGTATTCAGCTTATAAGAAGTGGATCAGATCAGTATGATGAGGGCTACTTTCCCAGCGTAGATGTTGGTTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

182

Amino Acids

20.62

Weight (kDa)

5.51

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67710 AT1G67710 AT1G67710
fragaria_vesca	FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870
malus_domestica	MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1
prunus_persica	Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1
pyrus_communis	pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680
rosa_chinensis	RchiOBHm_Chr4g0431941
rosa_laevigata	RLG00000006873
rosa_multiflora	Rmu_sc0004965.1_g000010
rosa_roxburghii	Rroxscaffold_5G00373380
rosa_rugosa	Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400
rosa_samantha	Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600
rosa_wichuraiana	Rw4G027020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	66
AclWI	GGATC	2 cut(s)	291, 499
AfiI	CCNNNNNNNGG	2 cut(s)	99, 196
AflII	CTTAAG	2 cut(s)	104, 368
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	3 cut(s)	12, 462, 478
AluI	AGCT	3 cut(s)	12, 462, 478
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	291, 499
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	260
BarI	GAAGNNNNNNTAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	4 cut(s)	194, 239, 274, 305
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	435
BfrI	CTTAAG	2 cut(s)	104, 368
BglII	AGATCT	1 cut(s)	108
BisI	GCNGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	111, 160
BpuEI	CTTGAG	2 cut(s)	110, 296
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 196
Bse1I	ACTGG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	76
BseGI	GGATG	4 cut(s)	80, 86, 205, 250
BseLI	CCNNNNNNNGG	2 cut(s)	99, 196
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	82, 351
BseXI	GCAGC	1 cut(s)	418
BseYI	CCCAGC	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	41, 52
BslI	CCNNNNNNNGG	2 cut(s)	99, 196
BsmAI	GTCTC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	6 cut(s)	73, 77, 108, 283, 491, 496
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	384
BspDI	ATCGAT	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	454
BspPI	GGATC	2 cut(s)	291, 499
BspTI	CTTAAG	2 cut(s)	104, 368
BsrI	ACTGG	1 cut(s)	290
BssMI	GATC	6 cut(s)	73, 77, 108, 283, 491, 496
Bst6I	CTCTTC	1 cut(s)	22
BstAFI	CTTAAG	2 cut(s)	104, 368
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	112, 392
BstF5I	GGATG	4 cut(s)	80, 86, 205, 250
BstKTI	GATC	6 cut(s)	76, 80, 111, 286, 494, 499
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	6 cut(s)	73, 77, 108, 283, 491, 496
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNSI	RCATGY	5 cut(s)	156, 235, 269, 357, 413
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	2 cut(s)	108, 283
BstYI	RGATCY	2 cut(s)	108, 283
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	80, 86, 205, 250
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	454
ClaI	ATCGAT	1 cut(s)	76
CviAII	CATG	9 cut(s)	153, 232, 241, 266, 347, 354, 410, 431, 455
CviJI	RGCY	8 cut(s)	12, 44, 48, 103, 373, 462, 478, 513
CviKI_1	RGCY	8 cut(s)	12, 44, 48, 103, 373, 462, 478, 513
DdeI	CTNAG	2 cut(s)	112, 392
DpnI	GATC	6 cut(s)	75, 79, 110, 285, 493, 498
DpnII	GATC	6 cut(s)	73, 77, 108, 283, 491, 496
DraI	TTTAAA	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	260
FaeI	CATG	9 cut(s)	156, 235, 244, 269, 350, 357, 413, 434, 458
FatI	CATG	9 cut(s)	152, 231, 240, 265, 346, 353, 409, 430, 454
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	407
FokI	GGATG	4 cut(s)	67, 73, 212, 257
Fsp4HI	GCNGC	1 cut(s)	407
GluI	GCNGC	1 cut(s)	407
GsaI	CCCAGC	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	41, 52
Hin1II	CATG	9 cut(s)	156, 235, 244, 269, 350, 357, 413, 434, 458
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	2 cut(s)	41, 52
Hpy166II	GTNNAC	2 cut(s)	67, 229
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	3 cut(s)	127, 260, 455
Hpy8I	GTNNAC	2 cut(s)	67, 229
Hpy99I	CGWCG	5 cut(s)	62, 65, 68, 71, 74
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	112, 392
Hsp92II	CATG	9 cut(s)	156, 235, 244, 269, 350, 357, 413, 434, 458
Kzo9I	GATC	6 cut(s)	73, 77, 108, 283, 491, 496
LmnI	GCTCC	2 cut(s)	140, 350
LpnPI	CCDG	6 cut(s)	30, 54, 65, 249, 303, 535
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	2 cut(s)	111, 160
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	6 cut(s)	75, 79, 110, 285, 493, 498
MboI	GATC	6 cut(s)	73, 77, 108, 283, 491, 496
MboII	GAAGA	4 cut(s)	9, 278, 356, 436
MflI	RGATCY	2 cut(s)	108, 283
MhlI	GDGCHC	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	460
MnlI	CCTC	8 cut(s)	59, 94, 100, 103, 123, 329, 460, 502
MseI	TTAA	3 cut(s)	105, 369, 539
MspCI	CTTAAG	2 cut(s)	104, 368
MspI	CCGG	2 cut(s)	41, 52
MspR9I	CCNGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	6 cut(s)	73, 77, 108, 283, 491, 496
NlaIII	CATG	9 cut(s)	156, 235, 244, 269, 350, 357, 413, 434, 458
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	5 cut(s)	156, 235, 269, 357, 413
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	454
PciI	ACATGT	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 66, 69
PkrI	GCNGC	1 cut(s)	408
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
PscI	ACATGT	1 cut(s)	152
PsiI	TTATAA	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	108, 283
PvuI	CGATCG	1 cut(s)	76
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	105, 369, 539
SatI	GCNGC	1 cut(s)	407
Sau3AI	GATC	6 cut(s)	73, 77, 108, 283, 491, 496
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	4 cut(s)	14, 134, 464, 480
SfaNI	GCATC	2 cut(s)	111, 160
Sfr274I	CTCGAG	1 cut(s)	260
SgrDI	CGTCGACG	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	5 cut(s)	104, 125, 260, 275, 368
SmoI	CTYRAG	5 cut(s)	104, 125, 260, 275, 368
StyD4I	CCNGG	1 cut(s)	51
TaqI	TCGA	3 cut(s)	66, 76, 261
Tru1I	TTAA	3 cut(s)	105, 369, 539
Tru9I	TTAA	3 cut(s)	105, 369, 539
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	406
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	398, 471
TspRI	CASTG	1 cut(s)	226
Vha464I	CTTAAG	2 cut(s)	104, 368
XceI	RCATGY	5 cut(s)	156, 235, 269, 357, 413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.