Rroxscaffold_5G00373380
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
54622825 .. 54626875
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373380.1

Sequence Viewer

Length: 1479 bp
ATGCCTGATATGGATGGTTTTAAACTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGAGAAACAAGTAGAGTTATGAAAGGAGTTCAACATGGAGCATGTGATTATCTTCTTAAGCCTATAAGAATGAAAGAACTGAGAAACATATGGCAGCATGTCTTCAGAAAAAAGATACATGAGATAAGAGATATAGAGGGTCATGAAAGCATCGACGGTATTCAGCTGACGAGAAATGGATCAGATCTCTATGATGATGGATACTTCCTTGGTGCCGACGACCTCATTTCATCAAGAAAAAGAAAGGACATAGAAAACAAATATGATGACAAAGACTTTGGTGATTCTTCATCTGCAAAAAAAGCTAGGGTAGTCTGGTCTGTTGATCTTCATCAGAAATTTGTAAAAGCGGTGCATCAGATTGGATTTGACAAAGTTGGTCCAAAGAAAATACTTGACCTGATGAACGTGCCCTGGTTGACCAGGGAAAATGTTGCAAGCCACTTGCAGAACTCGATTAGCATTCCACAAAATGATGTTACAAATGGCAGCTACAGATTTTCTGGCAATAACTTGGTTGCTCCGACTGTGATGGATCCAAAGAGAGTTGAAGATGATGTAAAGGGAATTATTCCGGAGCCTGTAGCAGAACCCAAGAGAGGTTCGACTCGCAGTATTCCTGATTCTCACAAGACCAGAAGTTCACAAGTGGACTTAAGTCATTCTTATGCAGAAACCAAGAAAGGCTTGATTGGTAATGTTGCTGATTCTCTGAAGATCAGGAGTTCACAGATGGGAGTCAATCATTCATTTGCATCAGTGGAATCTGAAATAAACTTCACTATACCAACAAAGTATTCTTGGATTGAAGCTCAAAGGAAACAAGAGCACAAGCCGGTTGTTCAGTTAGATAATGGCTTCAACAAGCCACAACCGCCTGGTGTACAGCACCACCTCCAAGCTGATCTACTACAGCCAATTCCTTCCATTAGTTCAAGACCATCCATCTTAGATGAAGAAACAAATCGTCCCATTAAGAATAAGCCTTCACAAGTTGCGTACAGAAACAGTCACATTAGCCATGTAAGTCCAACAATAACTGCAGCAGACTCCTTTTCAGAACAGATCAAGAGCTGTGTGGCGGACCAAGGTTTTGACCCCAGTTCCAGCAGTTTATCAAACATGAAAAACCAGGGCTTCAATCTGAGTTGCCTTACTAATTTCGAACCTGGCCAAAAGAACCTATTCTTTGGAAGTGGTTCATCTTTTGCTTCTTTGGACGACGAGTTGCAAATTTGTTTGTATCCAGCTGATTATTTTGGTATGAACCTTGGGGTTTCGGAGTATAATGATCCTGAAGTTCCTGCTCACTTGTATGAGGCAATGATATTTGGCTGTGAGTATCCATGTGAGTCATCGGAATATTCTCTGGCAGATCAGAGTCTTTTCATAGCATAA

Protein Analysis

492

Amino Acids

55.02

Weight (kDa)

5.73

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 1 - 57 4.6e-09 Response regulator receiver domain
Myb_DNA-binding PF00249 130 - 178 6.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 3 cut(s) 431, 956, 1163
AclWI GGATC 5 cut(s) 60, 268, 611, 624, 1367
AcoI YGGCCR 1 cut(s) 1252
AcsI RAATTY 2 cut(s) 419, 1314
AcuI CTGAAG 3 cut(s) 169, 815, 1398
AfaI GTAC 2 cut(s) 966, 1082
AfiI CCNNNNNNNGG 1 cut(s) 680
AflII CTTAAG 2 cut(s) 137, 736
AgsI TTSAA 6 cut(s) 113, 632, 890, 943, 1017, 1222
AjnI CCWGG 5 cut(s) 494, 503, 958, 1212, 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 862, 894
AluBI AGCT 7 cut(s) 247, 386, 573, 893, 983, 1155, 1331
AluI AGCT 7 cut(s) 247, 386, 573, 893, 983, 1155, 1331
Alw21I GWGCWC 1 cut(s) 912
AlwI GGATC 5 cut(s) 60, 268, 611, 624, 1367
Ama87I CYCGRG 1 cut(s) 29
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 1 cut(s) 1252
ApeKI GCWGC 3 cut(s) 175, 570, 1124
ApoI RAATTY 2 cut(s) 419, 1314
ArsI GACNNNNNNTTYG 4 cut(s) 341, 373, 1157, 1189
Asp700I GAANNNNTTC 2 cut(s) 1265, 1279
AspS9I GGNCC 2 cut(s) 461, 1165
AsuHPI GGTGA 1 cut(s) 374
AsuII TTCGAA 1 cut(s) 1245
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 2 cut(s) 461, 1165
BaeGI GKGCMC 1 cut(s) 495
BalI TGGCCA 1 cut(s) 1254
BamHI GGATCC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 912
BbvI GCAGC 3 cut(s) 187, 582, 1136
BccI CCATC 8 cut(s) 8, 43, 74, 272, 607, 808, 1030, 1034
BciT130I CCWGG 5 cut(s) 496, 505, 960, 1214, 1251
BciVI GTATCC 3 cut(s) 275, 1335, 1434
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 4 cut(s) 574, 663, 992, 1122
BfrI CTTAAG 2 cut(s) 137, 736
BfuI GTATCC 3 cut(s) 275, 1335, 1434
BglII AGATCT 1 cut(s) 265
BisI GCNGC 3 cut(s) 176, 571, 1125
BlsI GCNGC 3 cut(s) 177, 572, 1126
Bme1390I CCNGG 5 cut(s) 496, 505, 960, 1214, 1251
Bme18I GGWCC 2 cut(s) 461, 1165
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 461, 1165
BmiI GGNNCC 3 cut(s) 295, 618, 660
BmrFI CCNGG 5 cut(s) 496, 505, 960, 1214, 1251
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 3 cut(s) 240, 445, 845
BmuI ACTGGG 1 cut(s) 1176
BoxI GACNNNNGTC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 175
Bpu14I TTCGAA 1 cut(s) 1245
BpuEI CTTGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 6 cut(s) 289, 494, 504, 1168, 1213, 1351
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse118I RCCGGY 1 cut(s) 916
Bse1I ACTGG 1 cut(s) 1182
Bse3DI GCAATG 1 cut(s) 1410
Bse8I GATNNNNATC 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 5 cut(s) 496, 505, 960, 1214, 1251
BseDI CCNNGG 6 cut(s) 289, 494, 504, 1168, 1213, 1351
BseGI GGATG 2 cut(s) 19, 1022
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMI GCAATG 1 cut(s) 1410
BseMII CTCAG 2 cut(s) 152, 1217
BseNI ACTGG 1 cut(s) 1182
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 3 cut(s) 187, 582, 1136
BshFI GGCC 1 cut(s) 1254
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 912
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 2 cut(s) 656, 917
BslFI GGGAC 1 cut(s) 1035
BslI CCNNNNNNNGG 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 1035
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 1 cut(s) 1254
BsoBI CYCGRG 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 1245
Bsp1286I GDGCHC 2 cut(s) 495, 912
Bsp13I TCCGGA 1 cut(s) 655
Bsp1407I TGTACA 1 cut(s) 964
BspACI CCGC 3 cut(s) 431, 956, 1163
BspANI GGCC 1 cut(s) 1254
BspCNI CTCAG 2 cut(s) 153, 1218
BspEI TCCGGA 1 cut(s) 655
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 295, 618, 660
BspMAI CTGCAG 1 cut(s) 1126
BspPI GGATC 5 cut(s) 60, 268, 611, 624, 1367
BspT104I TTCGAA 1 cut(s) 1245
BspT107I GGYRCC 1 cut(s) 293
BspTI CTTAAG 2 cut(s) 137, 736
BsrDI GCAATG 1 cut(s) 1410
BsrFI RCCGGY 1 cut(s) 916
BsrGI TGTACA 1 cut(s) 964
BsrI ACTGG 1 cut(s) 1182
BssAI RCCGGY 1 cut(s) 916
BssECI CCNNGG 6 cut(s) 289, 494, 504, 1168, 1213, 1351
BssT1I CCWWGG 3 cut(s) 289, 1168, 1351
Bst2UI CCWGG 5 cut(s) 496, 505, 960, 1214, 1251
Bst4CI ACNGT 3 cut(s) 239, 610, 1091
BstAFI CTTAAG 2 cut(s) 137, 736
BstAUI TGTACA 1 cut(s) 964
BstBI TTCGAA 1 cut(s) 1245
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 161, 1030, 1226
BstF5I GGATG 2 cut(s) 19, 1022
BstMWI GCNNNNNNNGC 2 cut(s) 383, 955
BstNI CCWGG 5 cut(s) 496, 505, 960, 1214, 1251
BstNSI RCATGY 3 cut(s) 38, 126, 182
BstPAI GACNNNNGTC 1 cut(s) 738
BstSCI CCNGG 5 cut(s) 494, 503, 958, 1212, 1249
BstSFI CTRYAG 4 cut(s) 574, 663, 992, 1122
BstSLI GKGCMC 1 cut(s) 495
BstV1I GCAGC 3 cut(s) 187, 582, 1136
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 3 cut(s) 52, 265, 616
BstYI RGATCY 3 cut(s) 52, 265, 616
BsuI GTATCC 3 cut(s) 275, 1335, 1434
BsuRI GGCC 1 cut(s) 1254
BtsCI GGATG 2 cut(s) 19, 1022
BtsIMutI CAGTG 1 cut(s) 846
Cac8I GCNNGC 1 cut(s) 520
CciI TCATGA 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 916
Cfr13I GGNCC 2 cut(s) 461, 1165
Csp6I GTAC 2 cut(s) 965, 1081
CviAII CATG 9 cut(s) 35, 116, 123, 179, 200, 224, 1103, 1204, 1428
CviQI GTAC 2 cut(s) 965, 1081
DdeI CTNAG 3 cut(s) 161, 1030, 1226
DraI TTTAAA 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 1252
EciI GGCGGA 1 cut(s) 1178
Eco130I CCWWGG 3 cut(s) 289, 1168, 1351
Eco47I GGWCC 2 cut(s) 461, 1165
Eco57I CTGAAG 3 cut(s) 169, 815, 1398
Eco88I CYCGRG 1 cut(s) 29
EcoRII CCWGG 5 cut(s) 494, 503, 958, 1212, 1249
EcoT14I CCWWGG 3 cut(s) 289, 1168, 1351
ErhI CCWWGG 3 cut(s) 289, 1168, 1351
FaeI CATG 9 cut(s) 38, 119, 126, 182, 203, 227, 1106, 1207, 1431
FalI AAGNNNNNCTT 4 cut(s) 730, 762, 752, 784
FaqI GGGAC 1 cut(s) 1035
FatI CATG 9 cut(s) 34, 115, 122, 178, 199, 223, 1102, 1203, 1427
FauNDI CATATG 1 cut(s) 170
Fnu4HI GCNGC 3 cut(s) 176, 571, 1125
FokI GGATG 2 cut(s) 26, 1009
Fsp4HI GCNGC 3 cut(s) 176, 571, 1125
FspBI CTAG 1 cut(s) 387
GluI GCNGC 3 cut(s) 176, 571, 1125
HaeIII GGCC 1 cut(s) 1254
HapII CCGG 2 cut(s) 656, 917
Hin1II CATG 9 cut(s) 38, 119, 126, 182, 203, 227, 1106, 1207, 1431
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HinfI GANTC 9 cut(s) 365, 688, 704, 788, 819, 845, 1130, 1433, 1462
HpaII CCGG 2 cut(s) 656, 917
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 5 cut(s) 501, 725, 733, 809, 965
Hpy188III TCNNGA 9 cut(s) 29, 224, 315, 656, 701, 802, 1017, 1150, 1376
Hpy8I GTNNAC 5 cut(s) 501, 725, 733, 809, 965
Hpy99I CGWCG 3 cut(s) 239, 302, 1307
HpyAV CCTTC 2 cut(s) 1014, 1077
HpyCH4III ACNGT 3 cut(s) 239, 610, 1091
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 8 cut(s) 377, 436, 518, 529, 752, 836, 1124, 1312
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 955
HpyF3I CTNAG 3 cut(s) 161, 1030, 1226
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 9 cut(s) 38, 119, 126, 182, 203, 227, 1106, 1207, 1431
Kpn2I TCCGGA 1 cut(s) 655
LmnI GCTCC 3 cut(s) 119, 607, 658
Lsp1109I GCAGC 3 cut(s) 187, 582, 1136
LweI GCATC 3 cut(s) 240, 445, 845
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 559, 1091
MboII GAAGA 8 cut(s) 47, 125, 175, 360, 401, 644, 808, 1049
MflI RGATCY 3 cut(s) 52, 265, 616
MhlI GDGCHC 2 cut(s) 495, 912
MlsI TGGCCA 1 cut(s) 1254
MluCI AATT 5 cut(s) 419, 648, 999, 1240, 1314
MluNI TGGCCA 1 cut(s) 1254
MlyI GAGTC 5 cut(s) 682, 828, 1124, 1442, 1471
MmeI TCCRAC 3 cut(s) 19, 629, 1136
MnlI CCTC 5 cut(s) 211, 314, 674, 986, 1393
Mox20I TGGCCA 1 cut(s) 1254
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 2 cut(s) 1265, 1279
MscI TGGCCA 1 cut(s) 1254
MseI TTAA 4 cut(s) 21, 138, 737, 1056
MslI CAYNNNNRTG 2 cut(s) 747, 1395
Msp20I TGGCCA 1 cut(s) 1254
MspA1I CMGCKG 2 cut(s) 247, 1331
MspCI CTTAAG 2 cut(s) 137, 736
MspI CCGG 2 cut(s) 656, 917
MspR9I CCNGG 5 cut(s) 496, 505, 960, 1214, 1251
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 5 cut(s) 496, 505, 960, 1214, 1251
MwoI GCNNNNNNNGC 2 cut(s) 383, 955
NdeI CATATG 1 cut(s) 170
NlaIII CATG 9 cut(s) 38, 119, 126, 182, 203, 227, 1106, 1207, 1431
NlaIV GGNNCC 3 cut(s) 295, 618, 660
NmuCI GTSAC 1 cut(s) 1091
NspI RCATGY 3 cut(s) 38, 126, 182
NspV TTCGAA 1 cut(s) 1245
PaeR7I CTCGAG 1 cut(s) 29
PagI TCATGA 1 cut(s) 223
PctI GAATGC 1 cut(s) 543
PdmI GAANNNNTTC 2 cut(s) 1265, 1279
PfeI GAWTC 4 cut(s) 365, 704, 788, 845
PkrI GCNGC 3 cut(s) 177, 572, 1126
PleI GAGTC 5 cut(s) 682, 827, 1124, 1441, 1470
PpsI GAGTC 5 cut(s) 682, 827, 1124, 1441, 1470
PshAI GACNNNNGTC 1 cut(s) 738
Psp6I CCWGG 5 cut(s) 494, 503, 958, 1212, 1249
PspGI CCWGG 5 cut(s) 494, 503, 958, 1212, 1249
PspN4I GGNNCC 3 cut(s) 295, 618, 660
PspPI GGNCC 2 cut(s) 461, 1165
PstI CTGCAG 1 cut(s) 1126
PsuI RGATCY 3 cut(s) 52, 265, 616
PvuII CAGCTG 2 cut(s) 247, 1331
RsaI GTAC 2 cut(s) 966, 1082
RsaNI GTAC 2 cut(s) 965, 1081
RseI CAYNNNNRTG 2 cut(s) 747, 1395
SaqAI TTAA 4 cut(s) 21, 138, 737, 1056
SatI GCNGC 3 cut(s) 176, 571, 1125
Sau96I GGNCC 2 cut(s) 461, 1165
SchI GAGTC 5 cut(s) 682, 828, 1124, 1442, 1471
ScrFI CCNGG 5 cut(s) 496, 505, 960, 1214, 1251
SduI GDGCHC 2 cut(s) 495, 912
SfaNI GCATC 3 cut(s) 240, 445, 845
SfcI CTRYAG 4 cut(s) 574, 663, 992, 1122
Sfr274I CTCGAG 1 cut(s) 29
SfuI TTCGAA 1 cut(s) 1245
SinI GGWCC 2 cut(s) 461, 1165
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 747, 1395
SmlI CTYRAG 4 cut(s) 29, 44, 137, 736
SmoI CTYRAG 4 cut(s) 29, 44, 137, 736
Sse9I AATT 5 cut(s) 419, 648, 999, 1240, 1314
SsiI CCGC 3 cut(s) 431, 956, 1163
SspI AATATT 1 cut(s) 1445
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 5 cut(s) 494, 503, 958, 1212, 1249
StyI CCWWGG 3 cut(s) 289, 1168, 1351
TaaI ACNGT 3 cut(s) 239, 610, 1091
TaiI ACGT 1 cut(s) 492
TaqI TCGA 5 cut(s) 30, 234, 536, 686, 1245
TasI AATT 5 cut(s) 419, 648, 999, 1240, 1314
TatI WGTACW 1 cut(s) 964
TfiI GAWTC 4 cut(s) 365, 704, 788, 845
Tru1I TTAA 4 cut(s) 21, 138, 737, 1056
Tru9I TTAA 4 cut(s) 21, 138, 737, 1056
TscAI CASTG 1 cut(s) 846
TseFI GTSAC 1 cut(s) 1091
TseI GCWGC 3 cut(s) 175, 570, 1124
Tsp45I GTSAC 1 cut(s) 1091
TspRI CASTG 1 cut(s) 846
Vha464I CTTAAG 2 cut(s) 137, 736
VpaK11BI GGWCC 2 cut(s) 461, 1165
XapI RAATTY 2 cut(s) 419, 1314
XceI RCATGY 3 cut(s) 38, 126, 182
XhoI CTCGAG 1 cut(s) 29
XmnI GAANNNNTTC 2 cut(s) 1265, 1279
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.