two-component response regulator
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67710 AT1G67710 AT1G67710 |
| fragaria_vesca | FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 FvH4_4g24870 |
| malus_domestica | MD00G1165700.v1.1 MD13G1108300.v1.1 MD16G1108400.v1.1 |
| prunus_persica | Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 Prupe.1G238200_v2.0.a1 |
| pyrus_communis | pycom13g09350 pycom13g09360 pycom13g09390 pycom16g09230 pycom16g09240 pycom16g09250 pycom16g13680 |
| rosa_chinensis | RchiOBHm_Chr4g0431941 |
| rosa_laevigata | RLG00000006873 |
| rosa_multiflora | Rmu_sc0004965.1_g000010 |
| rosa_roxburghii | Rroxscaffold_5G00373380 |
| rosa_rugosa | Rorug04G0253300 Rorug04G0253300 Rorug04G0253300 Rorug04G0253400 |
| rosa_samantha | Rh4AG310600 Rh4BG317700 Rh4CG333000 Rh4DG312600 |
| rosa_wichuraiana | Rw4G027020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 293 |
| AccIII | TCCGGA | 1 cut(s) | 655 |
| AciI | CCGC | 3 cut(s) | 431, 956, 1163 |
| AclWI | GGATC | 5 cut(s) | 60, 268, 611, 624, 1367 |
| AcoI | YGGCCR | 1 cut(s) | 1252 |
| AcsI | RAATTY | 2 cut(s) | 419, 1314 |
| AcuI | CTGAAG | 3 cut(s) | 169, 815, 1398 |
| AfaI | GTAC | 2 cut(s) | 966, 1082 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 680 |
| AflII | CTTAAG | 2 cut(s) | 137, 736 |
| AgsI | TTSAA | 6 cut(s) | 113, 632, 890, 943, 1017, 1222 |
| AjnI | CCWGG | 5 cut(s) | 494, 503, 958, 1212, 1249 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 862, 894 |
| AluBI | AGCT | 7 cut(s) | 247, 386, 573, 893, 983, 1155, 1331 |
| AluI | AGCT | 7 cut(s) | 247, 386, 573, 893, 983, 1155, 1331 |
| Alw21I | GWGCWC | 1 cut(s) | 912 |
| AlwI | GGATC | 5 cut(s) | 60, 268, 611, 624, 1367 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| Aor13HI | TCCGGA | 1 cut(s) | 655 |
| AoxI | GGCC | 1 cut(s) | 1252 |
| ApeKI | GCWGC | 3 cut(s) | 175, 570, 1124 |
| ApoI | RAATTY | 2 cut(s) | 419, 1314 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 341, 373, 1157, 1189 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1265, 1279 |
| AspS9I | GGNCC | 2 cut(s) | 461, 1165 |
| AsuHPI | GGTGA | 1 cut(s) | 374 |
| AsuII | TTCGAA | 1 cut(s) | 1245 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| AvaII | GGWCC | 2 cut(s) | 461, 1165 |
| BaeGI | GKGCMC | 1 cut(s) | 495 |
| BalI | TGGCCA | 1 cut(s) | 1254 |
| BamHI | GGATCC | 1 cut(s) | 616 |
| BanI | GGYRCC | 1 cut(s) | 293 |
| BbsI | GAAGAC | 1 cut(s) | 175 |
| Bbv12I | GWGCWC | 1 cut(s) | 912 |
| BbvI | GCAGC | 3 cut(s) | 187, 582, 1136 |
| BccI | CCATC | 8 cut(s) | 8, 43, 74, 272, 607, 808, 1030, 1034 |
| BciT130I | CCWGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| BciVI | GTATCC | 3 cut(s) | 275, 1335, 1434 |
| BfaI | CTAG | 1 cut(s) | 387 |
| BfmI | CTRYAG | 4 cut(s) | 574, 663, 992, 1122 |
| BfrI | CTTAAG | 2 cut(s) | 137, 736 |
| BfuI | GTATCC | 3 cut(s) | 275, 1335, 1434 |
| BglII | AGATCT | 1 cut(s) | 265 |
| BisI | GCNGC | 3 cut(s) | 176, 571, 1125 |
| BlsI | GCNGC | 3 cut(s) | 177, 572, 1126 |
| Bme1390I | CCNGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| Bme18I | GGWCC | 2 cut(s) | 461, 1165 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 1165 |
| BmiI | GGNNCC | 3 cut(s) | 295, 618, 660 |
| BmrFI | CCNGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| BmrI | ACTGGG | 1 cut(s) | 1176 |
| BmsI | GCATC | 3 cut(s) | 240, 445, 845 |
| BmuI | ACTGGG | 1 cut(s) | 1176 |
| BoxI | GACNNNNGTC | 1 cut(s) | 738 |
| BpiI | GAAGAC | 1 cut(s) | 175 |
| Bpu14I | TTCGAA | 1 cut(s) | 1245 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| BsaBI | GATNNNNATC | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 6 cut(s) | 289, 494, 504, 1168, 1213, 1351 |
| BsaWI | WCCGGW | 1 cut(s) | 655 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 680 |
| Bse118I | RCCGGY | 1 cut(s) | 916 |
| Bse1I | ACTGG | 1 cut(s) | 1182 |
| Bse3DI | GCAATG | 1 cut(s) | 1410 |
| Bse8I | GATNNNNATC | 1 cut(s) | 411 |
| BseAI | TCCGGA | 1 cut(s) | 655 |
| BseBI | CCWGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| BseDI | CCNNGG | 6 cut(s) | 289, 494, 504, 1168, 1213, 1351 |
| BseGI | GGATG | 2 cut(s) | 19, 1022 |
| BseJI | GATNNNNATC | 1 cut(s) | 411 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BseMI | GCAATG | 1 cut(s) | 1410 |
| BseMII | CTCAG | 2 cut(s) | 152, 1217 |
| BseNI | ACTGG | 1 cut(s) | 1182 |
| BseSI | GKGCMC | 1 cut(s) | 495 |
| BseXI | GCAGC | 3 cut(s) | 187, 582, 1136 |
| BshFI | GGCC | 1 cut(s) | 1254 |
| BshNI | GGYRCC | 1 cut(s) | 293 |
| BsiHKAI | GWGCWC | 1 cut(s) | 912 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BsiSI | CCGG | 2 cut(s) | 656, 917 |
| BslFI | GGGAC | 1 cut(s) | 1035 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BsmFI | GGGAC | 1 cut(s) | 1035 |
| BsmI | GAATGC | 1 cut(s) | 543 |
| BsnI | GGCC | 1 cut(s) | 1254 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp119I | TTCGAA | 1 cut(s) | 1245 |
| Bsp1286I | GDGCHC | 2 cut(s) | 495, 912 |
| Bsp13I | TCCGGA | 1 cut(s) | 655 |
| Bsp1407I | TGTACA | 1 cut(s) | 964 |
| BspACI | CCGC | 3 cut(s) | 431, 956, 1163 |
| BspANI | GGCC | 1 cut(s) | 1254 |
| BspCNI | CTCAG | 2 cut(s) | 153, 1218 |
| BspEI | TCCGGA | 1 cut(s) | 655 |
| BspHI | TCATGA | 1 cut(s) | 223 |
| BspLI | GGNNCC | 3 cut(s) | 295, 618, 660 |
| BspMAI | CTGCAG | 1 cut(s) | 1126 |
| BspPI | GGATC | 5 cut(s) | 60, 268, 611, 624, 1367 |
| BspT104I | TTCGAA | 1 cut(s) | 1245 |
| BspT107I | GGYRCC | 1 cut(s) | 293 |
| BspTI | CTTAAG | 2 cut(s) | 137, 736 |
| BsrDI | GCAATG | 1 cut(s) | 1410 |
| BsrFI | RCCGGY | 1 cut(s) | 916 |
| BsrGI | TGTACA | 1 cut(s) | 964 |
| BsrI | ACTGG | 1 cut(s) | 1182 |
| BssAI | RCCGGY | 1 cut(s) | 916 |
| BssECI | CCNNGG | 6 cut(s) | 289, 494, 504, 1168, 1213, 1351 |
| BssT1I | CCWWGG | 3 cut(s) | 289, 1168, 1351 |
| Bst2UI | CCWGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| Bst4CI | ACNGT | 3 cut(s) | 239, 610, 1091 |
| BstAFI | CTTAAG | 2 cut(s) | 137, 736 |
| BstAUI | TGTACA | 1 cut(s) | 964 |
| BstBI | TTCGAA | 1 cut(s) | 1245 |
| BstC8I | GCNNGC | 1 cut(s) | 520 |
| BstDEI | CTNAG | 3 cut(s) | 161, 1030, 1226 |
| BstF5I | GGATG | 2 cut(s) | 19, 1022 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 383, 955 |
| BstNI | CCWGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| BstNSI | RCATGY | 3 cut(s) | 38, 126, 182 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 738 |
| BstSCI | CCNGG | 5 cut(s) | 494, 503, 958, 1212, 1249 |
| BstSFI | CTRYAG | 4 cut(s) | 574, 663, 992, 1122 |
| BstSLI | GKGCMC | 1 cut(s) | 495 |
| BstV1I | GCAGC | 3 cut(s) | 187, 582, 1136 |
| BstV2I | GAAGAC | 1 cut(s) | 175 |
| BstX2I | RGATCY | 3 cut(s) | 52, 265, 616 |
| BstYI | RGATCY | 3 cut(s) | 52, 265, 616 |
| BsuI | GTATCC | 3 cut(s) | 275, 1335, 1434 |
| BsuRI | GGCC | 1 cut(s) | 1254 |
| BtsCI | GGATG | 2 cut(s) | 19, 1022 |
| BtsIMutI | CAGTG | 1 cut(s) | 846 |
| Cac8I | GCNNGC | 1 cut(s) | 520 |
| CciI | TCATGA | 1 cut(s) | 223 |
| Cfr10I | RCCGGY | 1 cut(s) | 916 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 1165 |
| Csp6I | GTAC | 2 cut(s) | 965, 1081 |
| CviAII | CATG | 9 cut(s) | 35, 116, 123, 179, 200, 224, 1103, 1204, 1428 |
| CviQI | GTAC | 2 cut(s) | 965, 1081 |
| DdeI | CTNAG | 3 cut(s) | 161, 1030, 1226 |
| DraI | TTTAAA | 1 cut(s) | 22 |
| EaeI | YGGCCR | 1 cut(s) | 1252 |
| EciI | GGCGGA | 1 cut(s) | 1178 |
| Eco130I | CCWWGG | 3 cut(s) | 289, 1168, 1351 |
| Eco47I | GGWCC | 2 cut(s) | 461, 1165 |
| Eco57I | CTGAAG | 3 cut(s) | 169, 815, 1398 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| EcoRII | CCWGG | 5 cut(s) | 494, 503, 958, 1212, 1249 |
| EcoT14I | CCWWGG | 3 cut(s) | 289, 1168, 1351 |
| ErhI | CCWWGG | 3 cut(s) | 289, 1168, 1351 |
| FaeI | CATG | 9 cut(s) | 38, 119, 126, 182, 203, 227, 1106, 1207, 1431 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 730, 762, 752, 784 |
| FaqI | GGGAC | 1 cut(s) | 1035 |
| FatI | CATG | 9 cut(s) | 34, 115, 122, 178, 199, 223, 1102, 1203, 1427 |
| FauNDI | CATATG | 1 cut(s) | 170 |
| Fnu4HI | GCNGC | 3 cut(s) | 176, 571, 1125 |
| FokI | GGATG | 2 cut(s) | 26, 1009 |
| Fsp4HI | GCNGC | 3 cut(s) | 176, 571, 1125 |
| FspBI | CTAG | 1 cut(s) | 387 |
| GluI | GCNGC | 3 cut(s) | 176, 571, 1125 |
| HaeIII | GGCC | 1 cut(s) | 1254 |
| HapII | CCGG | 2 cut(s) | 656, 917 |
| Hin1II | CATG | 9 cut(s) | 38, 119, 126, 182, 203, 227, 1106, 1207, 1431 |
| HincII | GTYRAC | 1 cut(s) | 501 |
| HindII | GTYRAC | 1 cut(s) | 501 |
| HinfI | GANTC | 9 cut(s) | 365, 688, 704, 788, 819, 845, 1130, 1433, 1462 |
| HpaII | CCGG | 2 cut(s) | 656, 917 |
| HphI | GGTGA | 1 cut(s) | 374 |
| Hpy166II | GTNNAC | 5 cut(s) | 501, 725, 733, 809, 965 |
| Hpy188III | TCNNGA | 9 cut(s) | 29, 224, 315, 656, 701, 802, 1017, 1150, 1376 |
| Hpy8I | GTNNAC | 5 cut(s) | 501, 725, 733, 809, 965 |
| Hpy99I | CGWCG | 3 cut(s) | 239, 302, 1307 |
| HpyAV | CCTTC | 2 cut(s) | 1014, 1077 |
| HpyCH4III | ACNGT | 3 cut(s) | 239, 610, 1091 |
| HpyCH4IV | ACGT | 1 cut(s) | 489 |
| HpyCH4V | TGCA | 8 cut(s) | 377, 436, 518, 529, 752, 836, 1124, 1312 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 383, 955 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 1030, 1226 |
| HpySE526I | ACGT | 1 cut(s) | 489 |
| Hsp92II | CATG | 9 cut(s) | 38, 119, 126, 182, 203, 227, 1106, 1207, 1431 |
| Kpn2I | TCCGGA | 1 cut(s) | 655 |
| LmnI | GCTCC | 3 cut(s) | 119, 607, 658 |
| Lsp1109I | GCAGC | 3 cut(s) | 187, 582, 1136 |
| LweI | GCATC | 3 cut(s) | 240, 445, 845 |
| MaeI | CTAG | 1 cut(s) | 387 |
| MaeII | ACGT | 1 cut(s) | 489 |
| MaeIII | GTNAC | 2 cut(s) | 559, 1091 |
| MboII | GAAGA | 8 cut(s) | 47, 125, 175, 360, 401, 644, 808, 1049 |
| MflI | RGATCY | 3 cut(s) | 52, 265, 616 |
| MhlI | GDGCHC | 2 cut(s) | 495, 912 |
| MlsI | TGGCCA | 1 cut(s) | 1254 |
| MluCI | AATT | 5 cut(s) | 419, 648, 999, 1240, 1314 |
| MluNI | TGGCCA | 1 cut(s) | 1254 |
| MlyI | GAGTC | 5 cut(s) | 682, 828, 1124, 1442, 1471 |
| MmeI | TCCRAC | 3 cut(s) | 19, 629, 1136 |
| MnlI | CCTC | 5 cut(s) | 211, 314, 674, 986, 1393 |
| Mox20I | TGGCCA | 1 cut(s) | 1254 |
| MroI | TCCGGA | 1 cut(s) | 655 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1265, 1279 |
| MscI | TGGCCA | 1 cut(s) | 1254 |
| MseI | TTAA | 4 cut(s) | 21, 138, 737, 1056 |
| MslI | CAYNNNNRTG | 2 cut(s) | 747, 1395 |
| Msp20I | TGGCCA | 1 cut(s) | 1254 |
| MspA1I | CMGCKG | 2 cut(s) | 247, 1331 |
| MspCI | CTTAAG | 2 cut(s) | 137, 736 |
| MspI | CCGG | 2 cut(s) | 656, 917 |
| MspR9I | CCNGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| Mva1269I | GAATGC | 1 cut(s) | 543 |
| MvaI | CCWGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 383, 955 |
| NdeI | CATATG | 1 cut(s) | 170 |
| NlaIII | CATG | 9 cut(s) | 38, 119, 126, 182, 203, 227, 1106, 1207, 1431 |
| NlaIV | GGNNCC | 3 cut(s) | 295, 618, 660 |
| NmuCI | GTSAC | 1 cut(s) | 1091 |
| NspI | RCATGY | 3 cut(s) | 38, 126, 182 |
| NspV | TTCGAA | 1 cut(s) | 1245 |
| PaeR7I | CTCGAG | 1 cut(s) | 29 |
| PagI | TCATGA | 1 cut(s) | 223 |
| PctI | GAATGC | 1 cut(s) | 543 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1265, 1279 |
| PfeI | GAWTC | 4 cut(s) | 365, 704, 788, 845 |
| PkrI | GCNGC | 3 cut(s) | 177, 572, 1126 |
| PleI | GAGTC | 5 cut(s) | 682, 827, 1124, 1441, 1470 |
| PpsI | GAGTC | 5 cut(s) | 682, 827, 1124, 1441, 1470 |
| PshAI | GACNNNNGTC | 1 cut(s) | 738 |
| Psp6I | CCWGG | 5 cut(s) | 494, 503, 958, 1212, 1249 |
| PspGI | CCWGG | 5 cut(s) | 494, 503, 958, 1212, 1249 |
| PspN4I | GGNNCC | 3 cut(s) | 295, 618, 660 |
| PspPI | GGNCC | 2 cut(s) | 461, 1165 |
| PstI | CTGCAG | 1 cut(s) | 1126 |
| PsuI | RGATCY | 3 cut(s) | 52, 265, 616 |
| PvuII | CAGCTG | 2 cut(s) | 247, 1331 |
| RsaI | GTAC | 2 cut(s) | 966, 1082 |
| RsaNI | GTAC | 2 cut(s) | 965, 1081 |
| RseI | CAYNNNNRTG | 2 cut(s) | 747, 1395 |
| SaqAI | TTAA | 4 cut(s) | 21, 138, 737, 1056 |
| SatI | GCNGC | 3 cut(s) | 176, 571, 1125 |
| Sau96I | GGNCC | 2 cut(s) | 461, 1165 |
| SchI | GAGTC | 5 cut(s) | 682, 828, 1124, 1442, 1471 |
| ScrFI | CCNGG | 5 cut(s) | 496, 505, 960, 1214, 1251 |
| SduI | GDGCHC | 2 cut(s) | 495, 912 |
| SfaNI | GCATC | 3 cut(s) | 240, 445, 845 |
| SfcI | CTRYAG | 4 cut(s) | 574, 663, 992, 1122 |
| Sfr274I | CTCGAG | 1 cut(s) | 29 |
| SfuI | TTCGAA | 1 cut(s) | 1245 |
| SinI | GGWCC | 2 cut(s) | 461, 1165 |
| SlaI | CTCGAG | 1 cut(s) | 29 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 747, 1395 |
| SmlI | CTYRAG | 4 cut(s) | 29, 44, 137, 736 |
| SmoI | CTYRAG | 4 cut(s) | 29, 44, 137, 736 |
| Sse9I | AATT | 5 cut(s) | 419, 648, 999, 1240, 1314 |
| SsiI | CCGC | 3 cut(s) | 431, 956, 1163 |
| SspI | AATATT | 1 cut(s) | 1445 |
| SspMI | CTAG | 1 cut(s) | 387 |
| StyD4I | CCNGG | 5 cut(s) | 494, 503, 958, 1212, 1249 |
| StyI | CCWWGG | 3 cut(s) | 289, 1168, 1351 |
| TaaI | ACNGT | 3 cut(s) | 239, 610, 1091 |
| TaiI | ACGT | 1 cut(s) | 492 |
| TaqI | TCGA | 5 cut(s) | 30, 234, 536, 686, 1245 |
| TasI | AATT | 5 cut(s) | 419, 648, 999, 1240, 1314 |
| TatI | WGTACW | 1 cut(s) | 964 |
| TfiI | GAWTC | 4 cut(s) | 365, 704, 788, 845 |
| Tru1I | TTAA | 4 cut(s) | 21, 138, 737, 1056 |
| Tru9I | TTAA | 4 cut(s) | 21, 138, 737, 1056 |
| TscAI | CASTG | 1 cut(s) | 846 |
| TseFI | GTSAC | 1 cut(s) | 1091 |
| TseI | GCWGC | 3 cut(s) | 175, 570, 1124 |
| Tsp45I | GTSAC | 1 cut(s) | 1091 |
| TspRI | CASTG | 1 cut(s) | 846 |
| Vha464I | CTTAAG | 2 cut(s) | 137, 736 |
| VpaK11BI | GGWCC | 2 cut(s) | 461, 1165 |
| XapI | RAATTY | 2 cut(s) | 419, 1314 |
| XceI | RCATGY | 3 cut(s) | 38, 126, 182 |
| XhoI | CTCGAG | 1 cut(s) | 29 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1265, 1279 |
| XspI | CTAG | 1 cut(s) | 387 |