MD00G1199400.v1.1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0010565
Physical Location & Seq
Forward (+)
47077326 .. 47080958
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1199400.v1.1.491

Sequence Viewer

Length: 285 bp
ATGTTCCCCAAGGTTGCGTTGAAGGAGGTTATCGAGAAGGTTCTCGCTGAGCCGATACGGCTTCAGTTCGTTGTGGCTAATATTGGAACTGGGTTTTCATCGAATCTCTTGCACAGATCAAACACAAGCATACACATCAAACCATGCATTCACAGAGCAGGCGCCAAAGAGACCATCATTGAGTTTGGACTCCTATCGCAGCATCATCATTTGCTCTTGCAGCTGCTTTTGATGCAAAGGTTCTCAGCCATGACATTTGAATCAAAATTCTGGTATGCCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FIST FIST_C

Protein Analysis

95

Amino Acids

10.74

Weight (kDa)

9.65

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 162
AgsI TTSAA 2 cut(s) 22, 260
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 164
ApeKI GCWGC 3 cut(s) 199, 220, 223
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 210, 211, 232
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BcoDI GTCTC 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 3 cut(s) 200, 221, 224
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 3 cut(s) 201, 222, 225
BmiI GGNNCC 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 211, 222
BmuI ACTGGG 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 9
BseMII CTCAG 2 cut(s) 39, 258
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 210, 211, 232
BshNI GGYRCC 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 116
Bsp1720I GCTNAGC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 40, 257
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 48, 244
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 3 cut(s) 58, 220, 232
BstV1I GCAGC 3 cut(s) 210, 211, 232
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 164
CviAII CATG 2 cut(s) 144, 250
CviJI RGCY 5 cut(s) 52, 61, 77, 223, 248
CviKI_1 RGCY 5 cut(s) 52, 61, 77, 223, 248
DdeI CTNAG 2 cut(s) 48, 244
DinI GGCGCC 1 cut(s) 163
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 149
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 147, 253
FaiI YATR 4 cut(s) 131, 145, 251, 276
FatI CATG 2 cut(s) 143, 249
Fnu4HI GCNGC 3 cut(s) 200, 221, 224
Fsp4HI GCNGC 3 cut(s) 200, 221, 224
GlaI GCGC 1 cut(s) 163
GluI GCNGC 3 cut(s) 200, 221, 224
HaeII RGCGCY 1 cut(s) 165
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 147, 253
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 3 cut(s) 103, 189, 260
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 16, 31
HpyCH4V TGCA 4 cut(s) 112, 147, 220, 235
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 220, 232
HpyF3I CTNAG 2 cut(s) 48, 244
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 147, 253
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 3 cut(s) 75, 144, 256
Lsp1109I GCAGC 3 cut(s) 210, 211, 232
LweI GCATC 2 cut(s) 211, 222
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MluCI AATT 1 cut(s) 266
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 1 cut(s) 19
Mph1103I ATGCAT 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 58, 220, 232
NarI GGCGCC 1 cut(s) 162
NdeII GATC 1 cut(s) 116
NlaIII CATG 2 cut(s) 147, 253
NlaIV GGNNCC 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 149
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 103, 260
PkrI GCNGC 3 cut(s) 201, 222, 225
PleI GAGTC 1 cut(s) 183
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 223
SatI GCNGC 3 cut(s) 200, 221, 224
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 1 cut(s) 183
SetI ASST 6 cut(s) 15, 30, 42, 225, 242, 284
SfaNI GCATC 2 cut(s) 211, 222
SfoI GGCGCC 1 cut(s) 163
Sse9I AATT 1 cut(s) 266
SspDI GGCGCC 1 cut(s) 161
SspI AATATT 1 cut(s) 82
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 2 cut(s) 33, 101
TasI AATT 1 cut(s) 266
TfiI GAWTC 2 cut(s) 103, 260
TseI GCWGC 3 cut(s) 199, 220, 223
TspDTI ATGAA 1 cut(s) 87
XapI RAATTY 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.