Rroxscaffold_3G00265110

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010565
Physical Location & Seq
Reverse (-)
58549226 .. 58549941
716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265110.1

Sequence Viewer

Length: 519 bp
ATGCTTGATTGCGTCACTGTTTTACAACAGCTTATAAATCAGTTGGACTTGGGAAACCCAATTTTATACATTGAGGTCAGGAAAGGTAGACAATACTCCACACAATTCAGAACAACCCTGGCTTGTCATGAACTTTTGGGGGGTAACTACGAGTCCATCATCGTCAAGGGTTGTGGCATACAACCTGGGGATAGATTCATATTCTTCCACTCAGACGCCGGAAGTGCACCGACTCGTGTTGACGATGCTCGTCACAGTTTGGAAGCATTGGATGCTAATCAAGAGGTGTTTGGAGGCTTGATCTTCTCCAGCTACCACCGCGACAGGTCCTTTTTCGGAGCCTCTCATGTGGATATAACTCCCTTTACTGACAAGCTCAGTGGAGTCCCCGTGGCTGGCATCTCCTGCACAAGAGAAATTGGGCGTGGGGCGTTACTTGGGCCAGGACTAGGGTATTGCCTCCATGCACATAGCTGTGTGTACCTAGCTACGTCTTATGTTCCTCCTATGTCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FIST FIST_C

Protein Analysis

172

Amino Acids

18.8

Weight (kDa)

6.13

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AccI GTMKAC 1 cut(s) 88
AccII CGCG 1 cut(s) 321
AciI CCGC 1 cut(s) 319
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 2 cut(s) 395, 449
AjnI CCWGG 3 cut(s) 117, 184, 442
AluBI AGCT 5 cut(s) 31, 312, 376, 474, 488
AluI AGCT 5 cut(s) 31, 312, 376, 474, 488
Alw21I GWGCWC 1 cut(s) 229
Alw44I GTGCAC 1 cut(s) 225
AoxI GGCC 1 cut(s) 440
ApaLI GTGCAC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 327, 440
AvaII GGWCC 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 229
BauI CACGAG 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 229
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 3 cut(s) 119, 186, 444
BfaI CTAG 2 cut(s) 449, 485
Bme1390I CCNGG 3 cut(s) 119, 186, 444
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 327, 440
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 3 cut(s) 119, 186, 444
BmsI GCATC 3 cut(s) 235, 262, 408
BpmI CTGGAG 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 117, 185, 390
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 449
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 3 cut(s) 119, 186, 444
BseDI CCNNGG 3 cut(s) 117, 185, 390
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 395, 449
BseMII CTCAG 2 cut(s) 225, 391
BseSI GKGCMC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 395, 449
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 1 cut(s) 319
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 2 cut(s) 224, 390
BspFNI CGCG 1 cut(s) 321
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 117, 185, 390
BssMI GATC 1 cut(s) 300
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 3 cut(s) 119, 186, 444
Bst4CI ACNGT 2 cut(s) 19, 257
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 2 cut(s) 272, 405
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 211, 377
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 1 cut(s) 303
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 4 cut(s) 224, 272, 318, 405
BstNI CCWGG 3 cut(s) 119, 186, 444
BstSCI CCNGG 3 cut(s) 117, 184, 442
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 15, 385
Cac8I GCNNGC 1 cut(s) 397
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 327, 440
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 481
CspCI CAANNNNNGTGG 4 cut(s) 154, 189, 361, 396
CviAII CATG 3 cut(s) 128, 347, 464
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 2 cut(s) 211, 377
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 3 cut(s) 117, 184, 442
FaeI CATG 3 cut(s) 131, 350, 467
FaqI GGGAC 1 cut(s) 371
FatI CATG 3 cut(s) 127, 346, 463
FblI GTMKAC 1 cut(s) 88
FokI GGATG 1 cut(s) 284
FspBI CTAG 2 cut(s) 449, 485
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 3 cut(s) 131, 350, 467
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 152, 195, 232, 384
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 4 cut(s) 89, 227, 241, 481
Hpy188I TCNGA 3 cut(s) 110, 214, 338
Hpy188III TCNNGA 3 cut(s) 79, 128, 281
Hpy8I GTNNAC 4 cut(s) 89, 227, 241, 481
HpyCH4III ACNGT 2 cut(s) 19, 257
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 3 cut(s) 227, 408, 467
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 272, 318, 405
HpyF3I CTNAG 2 cut(s) 211, 377
HpySE526I ACGT 1 cut(s) 491
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 3 cut(s) 131, 350, 467
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 338
LweI GCATC 3 cut(s) 235, 262, 408
MaeI CTAG 2 cut(s) 449, 485
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 4 cut(s) 13, 143, 251, 432
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 2 cut(s) 196, 295
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 3 cut(s) 60, 104, 417
MlyI GAGTC 3 cut(s) 161, 226, 393
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 6 cut(s) 67, 277, 287, 352, 470, 513
MslI CAYNNNNRTG 1 cut(s) 474
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 3 cut(s) 119, 186, 444
MvaI CCWGG 3 cut(s) 119, 186, 444
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 4 cut(s) 224, 272, 318, 405
NdeII GATC 1 cut(s) 300
NlaIII CATG 3 cut(s) 131, 350, 467
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 13, 251
PagI TCATGA 1 cut(s) 127
PfeI GAWTC 1 cut(s) 195
PleI GAGTC 3 cut(s) 160, 226, 392
PpsI GAGTC 3 cut(s) 160, 226, 392
PpuMI RGGWCCY 1 cut(s) 327
PsiI TTATAA 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 3 cut(s) 117, 184, 442
PspGI CCWGG 3 cut(s) 117, 184, 442
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 2 cut(s) 327, 440
PspPPI RGGWCCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 474
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 2 cut(s) 327, 440
SchI GAGTC 3 cut(s) 161, 226, 393
ScrFI CCNGG 3 cut(s) 119, 186, 444
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 3 cut(s) 235, 262, 408
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 3 cut(s) 60, 104, 417
SsiI CCGC 1 cut(s) 319
SspMI CTAG 2 cut(s) 449, 485
StyD4I CCNGG 3 cut(s) 117, 184, 442
TaaI ACNGT 2 cut(s) 19, 257
TaiI ACGT 1 cut(s) 494
TasI AATT 3 cut(s) 60, 104, 417
TfiI GAWTC 1 cut(s) 195
TscAI CASTG 2 cut(s) 22, 385
TseFI GTSAC 2 cut(s) 13, 251
Tsp45I GTSAC 2 cut(s) 13, 251
TspDTI ATGAA 2 cut(s) 144, 187
TspRI CASTG 2 cut(s) 22, 385
VneI GTGCAC 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 2 cut(s) 449, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.