Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010565

Physical Location & Seq

Genomic Coordinates Forward (+)

24940670 .. 24943348

Gene Structure 2679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1155100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTTCTGTTCACATAAACGAAGCCGAGGTGGTGAGGGTAGATCAATGGCGGCTGCACAGCTGAAAACTGATCGTGAACAAGGAGTGTTTTCTCAAGTAGACGACGACATTTTGCAGAACATTCTGGGGAGACTACCGGGGGTTGCTTTCGCGTCAGCCGCCTGCGTCAACACAACTTGGAACAAGAACTGCAGCCACATGCTCTCTCATCCCAAATTTGCTTCTGCCCTTTCTCTTAACTCCGACCTGCACAATGCGATTGATGAAGTTCTTGCCGAGATTTTCTCTAAGCCAATTCGACCGGACTTTGTTGTCGCATATATTGGAACAAATTTCAGCTTGGAAGAAACTCACCAACTTATTACTGAGAAGATAGGCTCTAGAATTCCGATCATTACAAACAGAGCCATGGGACTAATCAGCACAGATGTCGAAACTCGTAATCTCCGCGAGGCATGCACCGCACTTGCTTATGATGGAGCATTTTGTGGGGGACATTCTGAGCTATTCGGGTCCTCTTCCGCCTTCATGCATGATGATGTTCGGGATGCTATTATGCCTGACAAGACTGCCATCGTCGGTGATGCAAGTGCCTCTTTTATGTACACTCGGAGAAATGAAACCGGAAATTACAGTAGCGATTTGTTCTACATTGCCGGTGCAGCACTCGTTTTTGTAAAGGATCAACACAAACCTGATTACATGGGGGAAATTGAGTTCCATGTCACATTGTCGCCGAGTTTGATGCCATTCGGTCCTCAAATCAAGACAATATCATCTTATGAGACGCCTACTCATAGTTCATGGATTTCCGCTGTAATGTCAGAGTTCGAAGGTGTCTTCATTGATTCCCACACCATTCTAAGGGAGCTTCGAAGCCAGTTGGGCATGTCGGACATTTACGCTGGGGTCACCAAAAGAAGACAATACCACAACGGAGCAGGACCACCAGTCTCCATGACAACCTTGAATTTTCATGAAGTTAGAGGGGGATATGGGGACTACATTCTTGTTGATGGTGTGGGAATCCAACCCGATGACGTCTTCTTCTTCTACCATTCAGATGCTGCAACTGCAATGAACACCGTTGATTATGCATCTGATAACCTTCAAACTTTGGTTCACAATGATTCCGATATCCAGCGAAAGGTGTTCGGAGGGTTTATCTTCTCCAGCAACAAACGCGGCATATCGTTGTTCAATAGACGTAATGTTGACTGTAAGCCATTTGCTGACAACTTCCCAGGAGTTCCGGTAGCTGGAATGTTTGGAAATGGGGAGATCGCGTGTGGTGCTTTGCTTGGTGAAGAAGAAAACCAAGAACTCGGTCATCCTCGTTGCTGCGTCCATGCTTGTAGTTCTGTGTACTTGGCCATGACTTATGTTCCTCCGCAAGCTCCATATTACTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST FIST_C

Protein Analysis

472

Amino Acids

51.79

Weight (kDa)

5.42

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010565)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08570
malus_domestica	MD00G1199400.v1.1 MD05G1336900.v1.1 MD06G1139000.v1.1 MD06G1139500.v1.1 MD14G1155100.v1.1
prunus_persica	Prupe.5G149100_v2.0.a1
pyrus_communis	pycom14g12890
rosa_laevigata	RLG00000004584
rosa_roxburghii	Rroxscaffold_3G00265110 Rroxscaffold_3G00265120
rosa_rugosa	Rorug06G0500100 Rorug06G0500200 Rorug06G0500200 Rorug06G0500300
rosa_samantha	Rh7AG105400 Rh7BG108200 Rh7CG110200 Rh7DG108400 Rh7DG108500
rosa_wichuraiana	Rw7G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AatII	GACGTC	1 cut(s)	1044
Acc36I	ACCTGC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	4 cut(s)	152, 450, 1185, 1286
AciI	CCGC	8 cut(s)	50, 159, 448, 462, 522, 813, 1185, 1391
AclWI	GGATC	1 cut(s)	690
AcoI	YGGCCR	1 cut(s)	1371
AcsI	RAATTY	4 cut(s)	215, 331, 384, 970
AcyI	GRCGYC	2 cut(s)	788, 1041
AfaI	GTAC	2 cut(s)	605, 1367
AfiI	CCNNNNNNNGG	3 cut(s)	864, 1147, 1259
AgsI	TTSAA	3 cut(s)	970, 1112, 1201
AhdI	GACNNNNNGTC	1 cut(s)	950
AjnI	CCWGG	1 cut(s)	1243
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	6 cut(s)	61, 339, 505, 871, 1259, 1397
AluI	AGCT	6 cut(s)	61, 339, 505, 871, 1259, 1397
Alw26I	GTCTC	3 cut(s)	124, 779, 958
AlwI	GGATC	1 cut(s)	690
AlwNI	CAGNNNCTG	1 cut(s)	1067
AoxI	GGCC	1 cut(s)	1371
ApeKI	GCWGC	5 cut(s)	53, 192, 662, 1067, 1341
ApoI	RAATTY	4 cut(s)	215, 331, 384, 970
AspS9I	GGNCC	3 cut(s)	513, 755, 944
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	5 cut(s)	44, 344, 593, 904, 1316
AsuII	TTCGAA	2 cut(s)	831, 874
AvaII	GGWCC	3 cut(s)	513, 755, 944
BalI	TGGCCA	1 cut(s)	1373
BbsI	GAAGAC	3 cut(s)	832, 928, 1036
BbvI	GCAGC	5 cut(s)	40, 204, 674, 1054, 1328
BccI	CCATC	3 cut(s)	470, 581, 1010
BcgI	CGANNNNNNTGC	4 cut(s)	412, 446, 727, 761
BciT130I	CCWGG	1 cut(s)	1245
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	3 cut(s)	124, 779, 958
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	885
BisI	GCNGC	8 cut(s)	51, 54, 159, 193, 663, 1068, 1186, 1342
BlsI	GCNGC	8 cut(s)	52, 55, 160, 194, 664, 1069, 1187, 1343
Bme1390I	CCNGG	2 cut(s)	138, 1245
Bme18I	GGWCC	3 cut(s)	513, 755, 944
BmeRI	GACNNNNNGTC	1 cut(s)	950
BmgT120I	GGNCC	3 cut(s)	513, 755, 944
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	138, 1245
BmsI	GCATC	5 cut(s)	538, 574, 735, 1054, 1106
BpiI	GAAGAC	3 cut(s)	832, 928, 1036
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpmI	CTGGAG	1 cut(s)	1156
Bpu14I	TTCGAA	2 cut(s)	831, 874
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	788, 1041
BsaJI	CCNNGG	4 cut(s)	25, 137, 408, 1243
BsaWI	WCCGGW	3 cut(s)	301, 623, 1252
BsaXI	ACNNNNNCTCC	4 cut(s)	1239, 1269, 1271, 1301
Bsc4I	CCNNNNNNNGG	3 cut(s)	864, 1147, 1259
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	2 cut(s)	880, 950
Bse3DI	GCAATG	2 cut(s)	651, 1083
BseBI	CCWGG	1 cut(s)	1245
BseDI	CCNNGG	4 cut(s)	25, 137, 408, 1243
BseGI	GGATG	3 cut(s)	208, 553, 1330
BseLI	CCNNNNNNNGG	3 cut(s)	864, 1147, 1259
BseMI	GCAATG	2 cut(s)	651, 1083
BseMII	CTCAG	2 cut(s)	357, 492
BseNI	ACTGG	2 cut(s)	880, 950
BseXI	GCAGC	5 cut(s)	40, 204, 674, 1054, 1328
BseYI	CCCAGC	1 cut(s)	905
BsgI	GTGCAG	3 cut(s)	39, 233, 681
Bsh1236I	CGCG	4 cut(s)	152, 450, 1185, 1286
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	1 cut(s)	1373
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	5 cut(s)	137, 302, 624, 657, 1253
BslFI	GGGAC	3 cut(s)	426, 507, 1013
BslI	CCNNNNNNNGG	3 cut(s)	864, 1147, 1259
BsmAI	GTCTC	3 cut(s)	124, 779, 958
BsmBI	CGTCTC	1 cut(s)	779
BsmFI	GGGAC	3 cut(s)	426, 507, 1013
BsnI	GGCC	1 cut(s)	1373
Bsp119I	TTCGAA	2 cut(s)	831, 874
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	41, 70, 390, 682, 1281
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	8 cut(s)	50, 159, 448, 462, 522, 813, 1185, 1391
BspANI	GGCC	1 cut(s)	1373
BspCNI	CTCAG	2 cut(s)	358, 493
BspFNI	CGCG	4 cut(s)	152, 450, 1185, 1286
BspHI	TCATGA	1 cut(s)	976
BspLI	GGNNCC	1 cut(s)	514
BspMAI	CTGCAG	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	690
BspT104I	TTCGAA	2 cut(s)	831, 874
BsrDI	GCAATG	2 cut(s)	651, 1083
BsrFI	RCCGGY	1 cut(s)	656
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	880, 950
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	4 cut(s)	25, 137, 408, 1243
BssMI	GATC	5 cut(s)	41, 70, 390, 682, 1281
BssNI	GRCGYC	2 cut(s)	788, 1041
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	1245
Bst4CI	ACNGT	3 cut(s)	635, 1087, 1220
Bst6I	CTCTTC	1 cut(s)	523
BstACI	GRCGYC	2 cut(s)	788, 1041
BstAUI	TGTACA	1 cut(s)	603
BstBI	TTCGAA	2 cut(s)	831, 874
BstC8I	GCNNGC	3 cut(s)	163, 457, 1395
BstDEI	CTNAG	4 cut(s)	288, 366, 501, 863
BstDSI	CCRYGG	1 cut(s)	408
BstEII	GGTNACC	1 cut(s)	910
BstF5I	GGATG	3 cut(s)	208, 553, 1330
BstFNI	CGCG	4 cut(s)	152, 450, 1185, 1286
BstKTI	GATC	5 cut(s)	44, 73, 393, 685, 1284
BstMAI	GTCTC	3 cut(s)	124, 779, 958
BstMBI	GATC	5 cut(s)	41, 70, 390, 682, 1281
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	8 cut(s)	158, 456, 461, 662, 885, 1073, 1182, 1292
BstNI	CCWGG	1 cut(s)	1245
BstNSI	RCATGY	3 cut(s)	202, 459, 892
BstPI	GGTNACC	1 cut(s)	910
BstSCI	CCNGG	2 cut(s)	136, 1243
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	4 cut(s)	152, 450, 1185, 1286
BstV1I	GCAGC	5 cut(s)	40, 204, 674, 1054, 1328
BstV2I	GAAGAC	3 cut(s)	832, 928, 1036
BsuRI	GGCC	1 cut(s)	1373
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	208, 553, 1330
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	163, 457, 1395
CaiI	CAGNNNCTG	1 cut(s)	1067
CciI	TCATGA	1 cut(s)	976
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	3 cut(s)	513, 755, 944
CseI	GACGC	4 cut(s)	141, 154, 796, 1333
Csp6I	GTAC	2 cut(s)	604, 1366
CviQI	GTAC	2 cut(s)	604, 1366
DdeI	CTNAG	4 cut(s)	288, 366, 501, 863
DpnI	GATC	5 cut(s)	43, 72, 392, 684, 1283
DpnII	GATC	5 cut(s)	41, 70, 390, 682, 1281
DrdI	GACNNNNNNGTC	1 cut(s)	311
DriI	GACNNNNNGTC	1 cut(s)	950
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	1371
Eam1104I	CTCTTC	1 cut(s)	523
Eam1105I	GACNNNNNGTC	1 cut(s)	950
EarI	CTCTTC	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	1138
Eco47I	GGWCC	3 cut(s)	513, 755, 944
Eco91I	GGTNACC	1 cut(s)	910
EcoO109I	RGGNCCY	1 cut(s)	513
EcoO65I	GGTNACC	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	1243
EcoRV	GATATC	1 cut(s)	1138
EcoT14I	CCWWGG	1 cut(s)	408
EcoT22I	ATGCAT	2 cut(s)	534, 1099
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	779
FalI	AAGNNNNNCTT	2 cut(s)	580, 612
FaqI	GGGAC	3 cut(s)	426, 507, 1013
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	8 cut(s)	51, 54, 159, 193, 663, 1068, 1186, 1342
FokI	GGATG	3 cut(s)	195, 560, 1317
Fsp4HI	GCNGC	8 cut(s)	51, 54, 159, 193, 663, 1068, 1186, 1342
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	8 cut(s)	51, 54, 159, 193, 663, 1068, 1186, 1342
GsaI	CCCAGC	1 cut(s)	909
GsuI	CTGGAG	1 cut(s)	1156
HaeIII	GGCC	1 cut(s)	1373
HapII	CCGG	5 cut(s)	137, 302, 624, 657, 1253
HgaI	GACGC	4 cut(s)	141, 154, 796, 1333
Hin1I	GRCGYC	2 cut(s)	788, 1041
HincII	GTYRAC	2 cut(s)	169, 1216
HindII	GTYRAC	2 cut(s)	169, 1216
HinfI	GANTC	3 cut(s)	848, 1026, 1130
HpaII	CCGG	5 cut(s)	137, 302, 624, 657, 1253
HphI	GGTGA	5 cut(s)	44, 344, 593, 904, 1316
Hpy166II	GTNNAC	8 cut(s)	11, 77, 100, 169, 606, 1123, 1216, 1366
Hpy188III	TCNNGA	5 cut(s)	74, 381, 545, 766, 977
Hpy8I	GTNNAC	8 cut(s)	11, 77, 100, 169, 606, 1123, 1216, 1366
Hpy99I	CGWCG	2 cut(s)	107, 581
HpyAV	CCTTC	3 cut(s)	535, 827, 1118
HpyCH4III	ACNGT	3 cut(s)	635, 1087, 1220
HpyCH4IV	ACGT	2 cut(s)	1041, 1207
HpyF10VI	GCNNNNNNNGC	8 cut(s)	158, 456, 461, 662, 885, 1073, 1182, 1292
HpyF3I	CTNAG	4 cut(s)	288, 366, 501, 863
HpySE526I	ACGT	2 cut(s)	1041, 1207
Hsp92I	GRCGYC	2 cut(s)	788, 1041
Kzo9I	GATC	5 cut(s)	41, 70, 390, 682, 1281
LmnI	GCTCC	4 cut(s)	479, 868, 938, 1402
Lsp1109I	GCAGC	5 cut(s)	40, 204, 674, 1054, 1328
LweI	GCATC	5 cut(s)	538, 574, 735, 1054, 1106
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	1041, 1207
MaeIII	GTNAC	2 cut(s)	724, 910
MalI	GATC	5 cut(s)	43, 72, 392, 684, 1283
MboI	GATC	5 cut(s)	41, 70, 390, 682, 1281
MlsI	TGGCCA	1 cut(s)	1373
MluCI	AATT	7 cut(s)	215, 294, 331, 384, 628, 711, 970
MluNI	TGGCCA	1 cut(s)	1373
MmeI	TCCRAC	3 cut(s)	267, 873, 1054
Mox20I	TGGCCA	1 cut(s)	1373
Mph1103I	ATGCAT	2 cut(s)	534, 1099
MscI	TGGCCA	1 cut(s)	1373
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	537, 1062
Msp20I	TGGCCA	1 cut(s)	1373
MspA1I	CMGCKG	2 cut(s)	61, 815
MspI	CCGG	5 cut(s)	137, 302, 624, 657, 1253
MspR9I	CCNGG	2 cut(s)	138, 1245
MvaI	CCWGG	1 cut(s)	1245
MvnI	CGCG	4 cut(s)	152, 450, 1185, 1286
MwoI	GCNNNNNNNGC	8 cut(s)	158, 456, 461, 662, 885, 1073, 1182, 1292
NciI	CCSGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	41, 70, 390, 682, 1281
NlaIV	GGNNCC	1 cut(s)	514
NmeAIII	GCCGAG	3 cut(s)	50, 301, 762
NmuCI	GTSAC	2 cut(s)	724, 910
NsiI	ATGCAT	2 cut(s)	534, 1099
NspI	RCATGY	3 cut(s)	202, 459, 892
NspV	TTCGAA	2 cut(s)	831, 874
PaeI	GCATGC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	976
PfeI	GAWTC	3 cut(s)	848, 1026, 1130
PkrI	GCNGC	8 cut(s)	52, 55, 160, 194, 664, 1069, 1187, 1343
PpuMI	RGGWCCY	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	1243
PspEI	GGTNACC	1 cut(s)	910
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	1 cut(s)	1243
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	3 cut(s)	513, 755, 944
PspPPI	RGGWCCY	1 cut(s)	513
PstI	CTGCAG	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	1067
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	2 cut(s)	605, 1367
RsaNI	GTAC	2 cut(s)	604, 1366
RseI	CAYNNNNRTG	2 cut(s)	537, 1062
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	8 cut(s)	51, 54, 159, 193, 663, 1068, 1186, 1342
Sau3AI	GATC	5 cut(s)	41, 70, 390, 682, 1281
Sau96I	GGNCC	3 cut(s)	513, 755, 944
ScrFI	CCNGG	2 cut(s)	138, 1245
SfaNI	GCATC	5 cut(s)	538, 574, 735, 1054, 1106
SfcI	CTRYAG	1 cut(s)	190
SfuI	TTCGAA	2 cut(s)	831, 874
SinI	GGWCC	3 cut(s)	513, 755, 944
SmiMI	CAYNNNNRTG	2 cut(s)	537, 1062
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	7 cut(s)	215, 294, 331, 384, 628, 711, 970
SsiI	CCGC	8 cut(s)	50, 159, 448, 462, 522, 813, 1185, 1391
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	136, 1243
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	635, 1087, 1220
TaiI	ACGT	2 cut(s)	1044, 1210
TaqI	TCGA	4 cut(s)	298, 432, 831, 874
TaqII	GACCGA	2 cut(s)	743, 1316
TasI	AATT	7 cut(s)	215, 294, 331, 384, 628, 711, 970
TatI	WGTACW	2 cut(s)	603, 1365
TauI	GCSGC	3 cut(s)	53, 161, 1188
TfiI	GAWTC	3 cut(s)	848, 1026, 1130
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	724, 910
TseI	GCWGC	5 cut(s)	53, 192, 662, 1067, 1341
Tsp45I	GTSAC	2 cut(s)	724, 910
TspDTI	ATGAA	8 cut(s)	279, 517, 633, 792, 832, 965, 993, 1094
TspGWI	ACGGA	1 cut(s)	951
VpaK11BI	GGWCC	3 cut(s)	513, 755, 944
XapI	RAATTY	4 cut(s)	215, 331, 384, 970
XbaI	TCTAGA	1 cut(s)	380
XceI	RCATGY	3 cut(s)	202, 459, 892
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	1042
Zsp2I	ATGCAT	2 cut(s)	534, 1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.