Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010565

Physical Location & Seq

Genomic Coordinates Forward (+)

28379855 .. 28380328

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1139000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCCCCTTTGATTTACACACACACCCCATCTATGTTTGTGTTTGAAATTTGTAACAGGGGATATGGGCACTTCATTCTTGTTGATGGTGTGGGAATCCAACCCGACGACGTCTTCTTCTTCTACCATTCAGATGCTGCAACTGCATTGAACACCATTGATTATGCATCTGATAACCTTCAAACTTTTGTCCATAATGATTCCGAAATCCAGCCAGAGGTGTTCGGAGGGTTTATCTTCTCCAGCAAGAAACGCGGCGCGTTGATGTTCGATAGACCTAATGTTGATTGTAAGCCGTTTGCTGACAACTTCCCAGGAGTTCCGGTAGCCAGAATGTTTGGCAATAAGGAGATCGCGTGTGGTGAAGAAGAAGATAATGAACTCGATCATCCTCGTTCTGTCCATGCTTGTAGCTCTATGTACTTGGCCATGAATTATGTTCCTCCCCAAGCTCCATATTACTTGAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST FIST_C

Protein Analysis

158

Amino Acids

17.72

Weight (kDa)

4.77

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010565)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08570
malus_domestica	MD00G1199400.v1.1 MD05G1336900.v1.1 MD06G1139000.v1.1 MD06G1139500.v1.1 MD14G1155100.v1.1
prunus_persica	Prupe.5G149100_v2.0.a1
pyrus_communis	pycom14g12890
rosa_laevigata	RLG00000004584
rosa_roxburghii	Rroxscaffold_3G00265110 Rroxscaffold_3G00265120
rosa_rugosa	Rorug06G0500100 Rorug06G0500200 Rorug06G0500200 Rorug06G0500300
rosa_samantha	Rh7AG105400 Rh7BG108200 Rh7CG110200 Rh7DG108400 Rh7DG108500
rosa_wichuraiana	Rw7G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccII	CGCG	3 cut(s)	255, 260, 356
AciI	CCGC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	47, 151, 182, 466
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	2 cut(s)	414, 452
AluI	AGCT	2 cut(s)	414, 452
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	37, 80
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	138, 256
BlsI	GCNGC	2 cut(s)	139, 257
Bme1390I	CCNGG	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	124, 176
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	313
BsaWI	WCCGGW	1 cut(s)	322
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	3 cut(s)	255, 260, 356
BshFI	GGCC	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	351, 385
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	428
BspFNI	CGCG	3 cut(s)	255, 260, 356
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	351, 385
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	3 cut(s)	255, 260, 356
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	354, 388
BstMBI	GATC	2 cut(s)	351, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 252
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	3 cut(s)	255, 260, 356
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	404, 430
CviJI	RGCY	6 cut(s)	214, 295, 329, 414, 428, 452
CviKI_1	RGCY	6 cut(s)	214, 295, 329, 414, 428, 452
CviQI	GTAC	1 cut(s)	421
DpnI	GATC	2 cut(s)	353, 387
DpnII	GATC	2 cut(s)	351, 385
EaeI	YGGCCR	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	169
FaeI	CATG	2 cut(s)	407, 433
FaiI	YATR	9 cut(s)	35, 66, 165, 195, 405, 419, 431, 438, 457
FatI	CATG	2 cut(s)	403, 429
Fnu4HI	GCNGC	2 cut(s)	138, 256
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	2 cut(s)	138, 256
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	138, 256
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	1 cut(s)	323
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	407, 433
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	96, 200
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	1 cut(s)	374
Hpy188I	TCNGA	4 cut(s)	133, 172, 205, 227
Hpy99I	CGWCG	2 cut(s)	110, 113
HpyAV	CCTTC	2 cut(s)	188, 460
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	140, 146, 167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 252
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	407, 433
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	351, 385
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	8 cut(s)	43, 224, 228, 256, 300, 327, 336, 343
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	2 cut(s)	124, 176
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	353, 387
MboI	GATC	2 cut(s)	351, 385
MboII	GAAGA	7 cut(s)	106, 109, 112, 229, 377, 380, 383
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	2 cut(s)	48, 433
MluNI	TGGCCA	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	211, 221, 402, 453
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	3 cut(s)	255, 260, 356
MwoI	GCNNNNNNNGC	2 cut(s)	143, 252
NdeII	GATC	2 cut(s)	351, 385
NlaIII	CATG	2 cut(s)	407, 433
NsiI	ATGCAT	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	96, 200
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	139, 257
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	132
SatI	GCNGC	2 cut(s)	138, 256
Sau3AI	GATC	2 cut(s)	351, 385
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	6 cut(s)	114, 180, 222, 280, 416, 454
SfaNI	GCATC	2 cut(s)	124, 176
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	48, 433
SsiI	CCGC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	313
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	270, 384
TasI	AATT	2 cut(s)	48, 433
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	96, 200
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	64, 393, 446
Tth111I	GACNNNGTC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	48
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.